Re: [Gmsh] compile with med support
According CMakeLists.txt is MED support activated by default
opt(MED "Enable MED mesh and post file formats" ${DEFAULT})
But at my cmake output it is missing, but cmake does not complain some
library is missing ?!? How do I set the path to libmedc1 for cmake gmsh?
cheers bernd
cmake gmsh
-- Gmsh 2.12.1 has been configured for Linux
--
-- * Build options: Ann Bamg Bfgs Blas(Generic) Blossom Cairo Chaco
DIntegration Dlopen Fltk GMP Gmm Jpeg Kbipack Lapack(Generic)
LinuxJoystick MathEx Mesh Metis Mmg3d Mpeg NativeFileChooser Netgen
ONELAB ONELABMetamodel OpenCascade OpenGL OptHom Parser Plugins Png
Post Salome Solver Taucs TetGen/BR Tetgen1.5 Voro3D Zlib
Zitat von Bernd Hahnebach :
Hi gmsh folks,
just compiled gmsh on debian jessie. It worked like a charm. I have
libmedc1 installed but gmsh compiled without med support. How is
support for med export activated in cmake?
cheers bernd
___
gmsh mailing list
gmsh@onelab.info
http://onelab.info/mailman/listinfo/gmsh
___
gmsh mailing list
gmsh@onelab.info
http://onelab.info/mailman/listinfo/gmsh
Re: [Gmsh] compile with med support
> On 04 Apr 2016, at 17:49, Bernd Hahnebach wrote:
>
> According CMakeLists.txt is MED support activated by default
>
> opt(MED "Enable MED mesh and post file formats" ${DEFAULT})
>
>
> But at my cmake output it is missing, but cmake does not complain some
> library is missing ?!? How do I set the path to libmedc1 for cmake gmsh?
>
Bernd - Gmsh looks for a library named libmed (.a, .so, .dylib, etc.): not sure
why yours is named libmedc1?
You can modify the line
find_library(MED_LIB med)
into
find_library(MED_LIB medc1)
in the CMakeLists.txt file to see if this fixes it.
> cheers bernd
>
>
> cmake gmsh
>
> -- Gmsh 2.12.1 has been configured for Linux
> --
> -- * Build options: Ann Bamg Bfgs Blas(Generic) Blossom Cairo Chaco
> DIntegration Dlopen Fltk GMP Gmm Jpeg Kbipack Lapack(Generic) LinuxJoystick
> MathEx Mesh Metis Mmg3d Mpeg NativeFileChooser Netgen ONELAB ONELABMetamodel
> OpenCascade OpenGL OptHom Parser Plugins Png Post Salome Solver Taucs
> TetGen/BR Tetgen1.5 Voro3D Zlib
>
>
>
>
> Zitat von Bernd Hahnebach :
>
>> Hi gmsh folks,
>>
>> just compiled gmsh on debian jessie. It worked like a charm. I have libmedc1
>> installed but gmsh compiled without med support. How is support for med
>> export activated in cmake?
>>
>> cheers bernd
>>
>>
>>
>> ___
>> gmsh mailing list
>> gmsh@onelab.info
>> http://onelab.info/mailman/listinfo/gmsh
>>
>
>
>
>
>
> ___
> gmsh mailing list
> gmsh@onelab.info
> http://onelab.info/mailman/listinfo/gmsh
--
Prof. Christophe Geuzaine
University of Liege, Electrical Engineering and Computer Science
http://www.montefiore.ulg.ac.be/~geuzaine
Tetrahedron V, July 4-5 2016: http://tetrahedron.montefiore.ulg.ac.be
Free software: http://gmsh.info | http://getdp.info | http://onelab.info
___
gmsh mailing list
gmsh@onelab.info
http://onelab.info/mailman/listinfo/gmsh
Re: [Gmsh] compile with med support
For med support on Debian Jessie package libmedc-dev has to be
installed. Watchout for the c !
But the culprit is somewhere else. Cmake only searches for libmed if
HDF5 was found. OK run cmake ../ again.
YEAH
-- HDF5_LIB-NOTFOUND
-- HDF5 not found
ok I searched for them, and they seam installed. OK
cmake \
-DHDF5_LIB=/usr/lib/x86_64-linux-gnu/libhdf5_cpp.so.8.0.2 \
../
BUT
[ 1%] Building CXX object CMakeFiles/gmsh.dir/Common/CommandLine.cpp.o
In file included from
/home/hugo/Documents/dev/gmsh/gmsh-dev/Common/CommandLine.cpp:41:0:
/usr/include/med.h:22:18: fatal error: hdf5.h: Datei oder Verzeichnis
nicht gefunden
#include
^
compilation terminated.
BUT
$ locate hdf5.h
/usr/include/hdf5/serial/hdf5.h
/usr/include/vtk-6.1/vtk_hdf5.h
Which results in how do I set the include Dir for hdf5 ?
Bernd
Zitat von Christophe Geuzaine :
On 04 Apr 2016, at 17:49, Bernd Hahnebach wrote:
According CMakeLists.txt is MED support activated by default
opt(MED "Enable MED mesh and post file formats" ${DEFAULT})
But at my cmake output it is missing, but cmake does not complain
some library is missing ?!? How do I set the path to libmedc1 for
cmake gmsh?
Bernd - Gmsh looks for a library named libmed (.a, .so, .dylib,
etc.): not sure why yours is named libmedc1?
You can modify the line
find_library(MED_LIB med)
into
find_library(MED_LIB medc1)
in the CMakeLists.txt file to see if this fixes it.
cheers bernd
cmake gmsh
-- Gmsh 2.12.1 has been configured for Linux
--
-- * Build options: Ann Bamg Bfgs Blas(Generic) Blossom Cairo
Chaco DIntegration Dlopen Fltk GMP Gmm Jpeg Kbipack Lapack(Generic)
LinuxJoystick MathEx Mesh Metis Mmg3d Mpeg NativeFileChooser Netgen
ONELAB ONELABMetamodel OpenCascade OpenGL OptHom Parser Plugins Png
Post Salome Solver Taucs TetGen/BR Tetgen1.5 Voro3D Zlib
Zitat von Bernd Hahnebach :
Hi gmsh folks,
just compiled gmsh on debian jessie. It worked like a charm. I
have libmedc1 installed but gmsh compiled without med support. How
is support for med export activated in cmake?
cheers bernd
___
gmsh mailing list
gmsh@onelab.info
http://onelab.info/mailman/listinfo/gmsh
___
gmsh mailing list
gmsh@onelab.info
http://onelab.info/mailman/listinfo/gmsh
--
Prof. Christophe Geuzaine
University of Liege, Electrical Engineering and Computer Science
http://www.montefiore.ulg.ac.be/~geuzaine
Tetrahedron V, July 4-5 2016: http://tetrahedron.montefiore.ulg.ac.be
Free software: http://gmsh.info | http://getdp.info | http://onelab.info
___
gmsh mailing list
gmsh@onelab.info
http://onelab.info/mailman/listinfo/gmsh
Re: [Gmsh] compile with med support
Found it. It seams a known problem on Debian Jessie (I do not know
about other debian). See
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=756472
Makeing this changes to the CMakeLists.txt did the trick. HDF5 where found.
cheers bernd
Zitat von Bernd Hahnebach :
For med support on Debian Jessie package libmedc-dev has to be
installed. Watchout for the c !
But the culprit is somewhere else. Cmake only searches for libmed if
HDF5 was found. OK run cmake ../ again.
YEAH
-- HDF5_LIB-NOTFOUND
-- HDF5 not found
ok I searched for them, and they seam installed. OK
cmake \
-DHDF5_LIB=/usr/lib/x86_64-linux-gnu/libhdf5_cpp.so.8.0.2 \
../
BUT
[ 1%] Building CXX object CMakeFiles/gmsh.dir/Common/CommandLine.cpp.o
In file included from
/home/hugo/Documents/dev/gmsh/gmsh-dev/Common/CommandLine.cpp:41:0:
/usr/include/med.h:22:18: fatal error: hdf5.h: Datei oder
Verzeichnis nicht gefunden
#include
^
compilation terminated.
BUT
$ locate hdf5.h
/usr/include/hdf5/serial/hdf5.h
/usr/include/vtk-6.1/vtk_hdf5.h
Which results in how do I set the include Dir for hdf5 ?
Bernd
Zitat von Christophe Geuzaine :
On 04 Apr 2016, at 17:49, Bernd Hahnebach wrote:
According CMakeLists.txt is MED support activated by default
opt(MED "Enable MED mesh and post file formats" ${DEFAULT})
But at my cmake output it is missing, but cmake does not complain
some library is missing ?!? How do I set the path to libmedc1 for
cmake gmsh?
Bernd - Gmsh looks for a library named libmed (.a, .so, .dylib,
etc.): not sure why yours is named libmedc1?
You can modify the line
find_library(MED_LIB med)
into
find_library(MED_LIB medc1)
in the CMakeLists.txt file to see if this fixes it.
cheers bernd
cmake gmsh
-- Gmsh 2.12.1 has been configured for Linux
--
-- * Build options: Ann Bamg Bfgs Blas(Generic) Blossom Cairo
Chaco DIntegration Dlopen Fltk GMP Gmm Jpeg Kbipack
Lapack(Generic) LinuxJoystick MathEx Mesh Metis Mmg3d Mpeg
NativeFileChooser Netgen ONELAB ONELABMetamodel OpenCascade OpenGL
OptHom Parser Plugins Png Post Salome Solver Taucs TetGen/BR
Tetgen1.5 Voro3D Zlib
Zitat von Bernd Hahnebach :
Hi gmsh folks,
just compiled gmsh on debian jessie. It worked like a charm. I
have libmedc1 installed but gmsh compiled without med support.
How is support for med export activated in cmake?
cheers bernd
___
gmsh mailing list
gmsh@onelab.info
http://onelab.info/mailman/listinfo/gmsh
___
gmsh mailing list
gmsh@onelab.info
http://onelab.info/mailman/listinfo/gmsh
--
Prof. Christophe Geuzaine
University of Liege, Electrical Engineering and Computer Science
http://www.montefiore.ulg.ac.be/~geuzaine
Tetrahedron V, July 4-5 2016: http://tetrahedron.montefiore.ulg.ac.be
Free software: http://gmsh.info | http://getdp.info | http://onelab.info
___
gmsh mailing list
gmsh@onelab.info
http://onelab.info/mailman/listinfo/gmsh
___
gmsh mailing list
gmsh@onelab.info
http://onelab.info/mailman/listinfo/gmsh
Re: [Gmsh] compile with med support
> On 05 Apr 2016, at 19:19, Bernd Hahnebach wrote:
>
> Found it. It seams a known problem on Debian Jessie (I do not know about
> other debian). See https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=756472
>
> Makeing this changes to the CMakeLists.txt did the trick. HDF5 where found.
>
Thanks - I've merge the Debian patch into our CMakeLists.txt.
> cheers bernd
>
>
> Zitat von Bernd Hahnebach :
>
>> For med support on Debian Jessie package libmedc-dev has to be installed.
>> Watchout for the c !
>>
>> But the culprit is somewhere else. Cmake only searches for libmed if HDF5
>> was found. OK run cmake ../ again.
>> YEAH
>> -- HDF5_LIB-NOTFOUND
>> -- HDF5 not found
>>
>> ok I searched for them, and they seam installed. OK
>>
>> cmake \
>> -DHDF5_LIB=/usr/lib/x86_64-linux-gnu/libhdf5_cpp.so.8.0.2 \
>> ../
>>
>> BUT
>>
>> [ 1%] Building CXX object CMakeFiles/gmsh.dir/Common/CommandLine.cpp.o
>> In file included from
>> /home/hugo/Documents/dev/gmsh/gmsh-dev/Common/CommandLine.cpp:41:0:
>> /usr/include/med.h:22:18: fatal error: hdf5.h: Datei oder Verzeichnis nicht
>> gefunden
>> #include
>> ^
>> compilation terminated.
>>
>>
>> BUT
>>
>> $ locate hdf5.h
>> /usr/include/hdf5/serial/hdf5.h
>> /usr/include/vtk-6.1/vtk_hdf5.h
>>
>>
>> Which results in how do I set the include Dir for hdf5 ?
>>
>> Bernd
>>
>>
>> Zitat von Christophe Geuzaine :
>>
>>>
On 04 Apr 2016, at 17:49, Bernd Hahnebach wrote:
According CMakeLists.txt is MED support activated by default
opt(MED "Enable MED mesh and post file formats" ${DEFAULT})
But at my cmake output it is missing, but cmake does not complain some
library is missing ?!? How do I set the path to libmedc1 for cmake gmsh?
>>>
>>> Bernd - Gmsh looks for a library named libmed (.a, .so, .dylib, etc.): not
>>> sure why yours is named libmedc1?
>>>
>>> You can modify the line
>>>
>>> find_library(MED_LIB med)
>>>
>>> into
>>>
>>> find_library(MED_LIB medc1)
>>>
>>> in the CMakeLists.txt file to see if this fixes it.
>>>
cheers bernd
cmake gmsh
-- Gmsh 2.12.1 has been configured for Linux
--
-- * Build options: Ann Bamg Bfgs Blas(Generic) Blossom Cairo Chaco
DIntegration Dlopen Fltk GMP Gmm Jpeg Kbipack Lapack(Generic)
LinuxJoystick MathEx Mesh Metis Mmg3d Mpeg NativeFileChooser Netgen ONELAB
ONELABMetamodel OpenCascade OpenGL OptHom Parser Plugins Png Post Salome
Solver Taucs TetGen/BR Tetgen1.5 Voro3D Zlib
Zitat von Bernd Hahnebach :
> Hi gmsh folks,
>
> just compiled gmsh on debian jessie. It worked like a charm. I have
> libmedc1 installed but gmsh compiled without med support. How is support
> for med export activated in cmake?
>
> cheers bernd
>
>
>
> ___
> gmsh mailing list
> gmsh@onelab.info
> http://onelab.info/mailman/listinfo/gmsh
>
___
gmsh mailing list
gmsh@onelab.info
http://onelab.info/mailman/listinfo/gmsh
>>>
>>> --
>>> Prof. Christophe Geuzaine
>>> University of Liege, Electrical Engineering and Computer Science
>>> http://www.montefiore.ulg.ac.be/~geuzaine
>>>
>>> Tetrahedron V, July 4-5 2016: http://tetrahedron.montefiore.ulg.ac.be
>>> Free software: http://gmsh.info | http://getdp.info | http://onelab.info
>>>
>>>
>>>
>>
>>
>>
>>
>>
>> ___
>> gmsh mailing list
>> gmsh@onelab.info
>> http://onelab.info/mailman/listinfo/gmsh
>>
>
>
>
>
>
> ___
> gmsh mailing list
> gmsh@onelab.info
> http://onelab.info/mailman/listinfo/gmsh
--
Prof. Christophe Geuzaine
University of Liege, Electrical Engineering and Computer Science
http://www.montefiore.ulg.ac.be/~geuzaine
Tetrahedron V, July 4-5 2016: http://tetrahedron.montefiore.ulg.ac.be
Free software: http://gmsh.info | http://getdp.info | http://onelab.info
___
gmsh mailing list
gmsh@onelab.info
http://onelab.info/mailman/listinfo/gmsh
Re: [Gmsh] compile with med support
> On 06 Apr 2016, at 07:54, Bernd Hahnebach wrote:
>
> Zitat von Christophe Geuzaine :
>
>>
>>> On 05 Apr 2016, at 19:19, Bernd Hahnebach wrote:
>>>
>>> Found it. It seams a known problem on Debian Jessie (I do not know about
>>> other debian). See https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=756472
>>>
>>> Makeing this changes to the CMakeLists.txt did the trick. HDF5 where found.
>>>
>>
>> Thanks - I've merge the Debian patch into our CMakeLists.txt.
>
> Where? https://onelab.info/svn/gmsh/trunk/CMakeLists.txt has not been changed
> !
>
Cf. https://onelab.info/trac/gmsh/timeline: I merged the patch, then reverted
it as it broke our nightly builds... (maybe this requires a too recent version
of cmake)
Doesn't the old version work if you specify the path where the hdf5 stuff is
installed using e.g.
cmake -DCMAKE_PREFIX_PATH=/path/to/hdf5/stuff ..
> Bernd
>
>
>
>>
>>
>>> cheers bernd
>>>
>>>
>>> Zitat von Bernd Hahnebach :
>>>
For med support on Debian Jessie package libmedc-dev has to be installed.
Watchout for the c !
But the culprit is somewhere else. Cmake only searches for libmed if HDF5
was found. OK run cmake ../ again.
YEAH
-- HDF5_LIB-NOTFOUND
-- HDF5 not found
ok I searched for them, and they seam installed. OK
cmake \
-DHDF5_LIB=/usr/lib/x86_64-linux-gnu/libhdf5_cpp.so.8.0.2 \
../
BUT
[ 1%] Building CXX object CMakeFiles/gmsh.dir/Common/CommandLine.cpp.o
In file included from
/home/hugo/Documents/dev/gmsh/gmsh-dev/Common/CommandLine.cpp:41:0:
/usr/include/med.h:22:18: fatal error: hdf5.h: Datei oder Verzeichnis
nicht gefunden
#include
^
compilation terminated.
BUT
$ locate hdf5.h
/usr/include/hdf5/serial/hdf5.h
/usr/include/vtk-6.1/vtk_hdf5.h
Which results in how do I set the include Dir for hdf5 ?
Bernd
Zitat von Christophe Geuzaine :
>
>> On 04 Apr 2016, at 17:49, Bernd Hahnebach wrote:
>>
>> According CMakeLists.txt is MED support activated by default
>>
>> opt(MED "Enable MED mesh and post file formats" ${DEFAULT})
>>
>>
>> But at my cmake output it is missing, but cmake does not complain some
>> library is missing ?!? How do I set the path to libmedc1 for cmake gmsh?
>>
>
> Bernd - Gmsh looks for a library named libmed (.a, .so, .dylib, etc.):
> not sure why yours is named libmedc1?
>
> You can modify the line
>
> find_library(MED_LIB med)
>
> into
>
> find_library(MED_LIB medc1)
>
> in the CMakeLists.txt file to see if this fixes it.
>
>> cheers bernd
>>
>>
>> cmake gmsh
>>
>> -- Gmsh 2.12.1 has been configured for Linux
>> --
>> -- * Build options: Ann Bamg Bfgs Blas(Generic) Blossom Cairo Chaco
>> DIntegration Dlopen Fltk GMP Gmm Jpeg Kbipack Lapack(Generic)
>> LinuxJoystick MathEx Mesh Metis Mmg3d Mpeg NativeFileChooser Netgen
>> ONELAB ONELABMetamodel OpenCascade OpenGL OptHom Parser Plugins Png Post
>> Salome Solver Taucs TetGen/BR Tetgen1.5 Voro3D Zlib
>>
>>
>>
>>
>> Zitat von Bernd Hahnebach :
>>
>>> Hi gmsh folks,
>>>
>>> just compiled gmsh on debian jessie. It worked like a charm. I have
>>> libmedc1 installed but gmsh compiled without med support. How is
>>> support for med export activated in cmake?
>>>
>>> cheers bernd
>>>
>>>
>>>
>>> ___
>>> gmsh mailing list
>>> gmsh@onelab.info
>>> http://onelab.info/mailman/listinfo/gmsh
>>>
>>
>>
>>
>>
>>
>> ___
>> gmsh mailing list
>> gmsh@onelab.info
>> http://onelab.info/mailman/listinfo/gmsh
>
> --
> Prof. Christophe Geuzaine
> University of Liege, Electrical Engineering and Computer Science
> http://www.montefiore.ulg.ac.be/~geuzaine
>
> Tetrahedron V, July 4-5 2016: http://tetrahedron.montefiore.ulg.ac.be
> Free software: http://gmsh.info | http://getdp.info | http://onelab.info
>
>
>
___
gmsh mailing list
gmsh@onelab.info
http://onelab.info/mailman/listinfo/gmsh
>>>
>>>
>>>
>>>
>>>
>>> ___
>>> gmsh mailing list
>>> gmsh@onelab.info
>>> http://onelab.info/mailman/listinfo/gmsh
>>
>> --
>> Prof. Christophe Geuzaine
>> University of Liege, Electrical Engineering and Computer Science
>> http://www.montefiore.ulg.ac.be/~geuzaine
>>
>> Tetrahedron V, July 4-5 2016: http://tetrahedron.montefiore.ulg.ac.be
>> Free software: http://gmsh.info | http://getdp.info | http://onelab.info
>
Re: [Gmsh] compile with med support
Zitat von Christophe Geuzaine :
On 05 Apr 2016, at 19:19, Bernd Hahnebach wrote:
Found it. It seams a known problem on Debian Jessie (I do not know
about other debian). See
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=756472
Makeing this changes to the CMakeLists.txt did the trick. HDF5 where found.
Thanks - I've merge the Debian patch into our CMakeLists.txt.
Where? https://onelab.info/svn/gmsh/trunk/CMakeLists.txt has not been
changed !
Bernd
cheers bernd
Zitat von Bernd Hahnebach :
For med support on Debian Jessie package libmedc-dev has to be
installed. Watchout for the c !
But the culprit is somewhere else. Cmake only searches for libmed
if HDF5 was found. OK run cmake ../ again.
YEAH
-- HDF5_LIB-NOTFOUND
-- HDF5 not found
ok I searched for them, and they seam installed. OK
cmake \
-DHDF5_LIB=/usr/lib/x86_64-linux-gnu/libhdf5_cpp.so.8.0.2 \
../
BUT
[ 1%] Building CXX object CMakeFiles/gmsh.dir/Common/CommandLine.cpp.o
In file included from
/home/hugo/Documents/dev/gmsh/gmsh-dev/Common/CommandLine.cpp:41:0:
/usr/include/med.h:22:18: fatal error: hdf5.h: Datei oder
Verzeichnis nicht gefunden
#include
^
compilation terminated.
BUT
$ locate hdf5.h
/usr/include/hdf5/serial/hdf5.h
/usr/include/vtk-6.1/vtk_hdf5.h
Which results in how do I set the include Dir for hdf5 ?
Bernd
Zitat von Christophe Geuzaine :
On 04 Apr 2016, at 17:49, Bernd Hahnebach wrote:
According CMakeLists.txt is MED support activated by default
opt(MED "Enable MED mesh and post file formats" ${DEFAULT})
But at my cmake output it is missing, but cmake does not
complain some library is missing ?!? How do I set the path to
libmedc1 for cmake gmsh?
Bernd - Gmsh looks for a library named libmed (.a, .so, .dylib,
etc.): not sure why yours is named libmedc1?
You can modify the line
find_library(MED_LIB med)
into
find_library(MED_LIB medc1)
in the CMakeLists.txt file to see if this fixes it.
cheers bernd
cmake gmsh
-- Gmsh 2.12.1 has been configured for Linux
--
-- * Build options: Ann Bamg Bfgs Blas(Generic) Blossom Cairo
Chaco DIntegration Dlopen Fltk GMP Gmm Jpeg Kbipack
Lapack(Generic) LinuxJoystick MathEx Mesh Metis Mmg3d Mpeg
NativeFileChooser Netgen ONELAB ONELABMetamodel OpenCascade
OpenGL OptHom Parser Plugins Png Post Salome Solver Taucs
TetGen/BR Tetgen1.5 Voro3D Zlib
Zitat von Bernd Hahnebach :
Hi gmsh folks,
just compiled gmsh on debian jessie. It worked like a charm. I
have libmedc1 installed but gmsh compiled without med support.
How is support for med export activated in cmake?
cheers bernd
___
gmsh mailing list
gmsh@onelab.info
http://onelab.info/mailman/listinfo/gmsh
___
gmsh mailing list
gmsh@onelab.info
http://onelab.info/mailman/listinfo/gmsh
--
Prof. Christophe Geuzaine
University of Liege, Electrical Engineering and Computer Science
http://www.montefiore.ulg.ac.be/~geuzaine
Tetrahedron V, July 4-5 2016: http://tetrahedron.montefiore.ulg.ac.be
Free software: http://gmsh.info | http://getdp.info | http://onelab.info
___
gmsh mailing list
gmsh@onelab.info
http://onelab.info/mailman/listinfo/gmsh
___
gmsh mailing list
gmsh@onelab.info
http://onelab.info/mailman/listinfo/gmsh
--
Prof. Christophe Geuzaine
University of Liege, Electrical Engineering and Computer Science
http://www.montefiore.ulg.ac.be/~geuzaine
Tetrahedron V, July 4-5 2016: http://tetrahedron.montefiore.ulg.ac.be
Free software: http://gmsh.info | http://getdp.info | http://onelab.info
___
gmsh mailing list
gmsh@onelab.info
http://onelab.info/mailman/listinfo/gmsh
Re: [Gmsh] compile with med support
Zitat von Christophe Geuzaine :
On 06 Apr 2016, at 07:54, Bernd Hahnebach wrote:
Zitat von Christophe Geuzaine :
On 05 Apr 2016, at 19:19, Bernd Hahnebach wrote:
Found it. It seams a known problem on Debian Jessie (I do not
know about other debian). See
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=756472
Makeing this changes to the CMakeLists.txt did the trick. HDF5
where found.
Thanks - I've merge the Debian patch into our CMakeLists.txt.
Where? https://onelab.info/svn/gmsh/trunk/CMakeLists.txt has not
been changed !
Cf. https://onelab.info/trac/gmsh/timeline: I merged the patch, then
reverted it as it broke our nightly builds... (maybe this requires a
too recent version of cmake)
ahh, thanks for the information
Doesn't the old version work if you specify the path where the hdf5
stuff is installed using e.g.
cmake -DCMAKE_PREFIX_PATH=/path/to/hdf5/stuff ..
Two possibilities to get HDF5 found properly on Debian Jessie for me:
first:
Use the patched CMakeLists.txt (file and diff attached)
second:
Use the following cmake command
cmake \
-DCMAKE_PREFIX_PATH=/usr/include/hdf5/serial \
-DHDF5_LIB=/usr/lib/x86_64-linux-gnu/libhdf5_cpp.so.8.0.2 \
../
Bernd
cheers bernd
Zitat von Bernd Hahnebach :
For med support on Debian Jessie package libmedc-dev has to be
installed. Watchout for the c !
But the culprit is somewhere else. Cmake only searches for
libmed if HDF5 was found. OK run cmake ../ again.
YEAH
-- HDF5_LIB-NOTFOUND
-- HDF5 not found
ok I searched for them, and they seam installed. OK
cmake \
-DHDF5_LIB=/usr/lib/x86_64-linux-gnu/libhdf5_cpp.so.8.0.2 \
../
BUT
[ 1%] Building CXX object CMakeFiles/gmsh.dir/Common/CommandLine.cpp.o
In file included from
/home/hugo/Documents/dev/gmsh/gmsh-dev/Common/CommandLine.cpp:41:0:
/usr/include/med.h:22:18: fatal error: hdf5.h: Datei oder
Verzeichnis nicht gefunden
#include
^
compilation terminated.
BUT
$ locate hdf5.h
/usr/include/hdf5/serial/hdf5.h
/usr/include/vtk-6.1/vtk_hdf5.h
Which results in how do I set the include Dir for hdf5 ?
Bernd
Zitat von Christophe Geuzaine :
On 04 Apr 2016, at 17:49, Bernd Hahnebach wrote:
According CMakeLists.txt is MED support activated by default
opt(MED "Enable MED mesh and post file formats" ${DEFAULT})
But at my cmake output it is missing, but cmake does not
complain some library is missing ?!? How do I set the path to
libmedc1 for cmake gmsh?
Bernd - Gmsh looks for a library named libmed (.a, .so, .dylib,
etc.): not sure why yours is named libmedc1?
You can modify the line
find_library(MED_LIB med)
into
find_library(MED_LIB medc1)
in the CMakeLists.txt file to see if this fixes it.
cheers bernd
cmake gmsh
-- Gmsh 2.12.1 has been configured for Linux
--
-- * Build options: Ann Bamg Bfgs Blas(Generic) Blossom Cairo
Chaco DIntegration Dlopen Fltk GMP Gmm Jpeg Kbipack
Lapack(Generic) LinuxJoystick MathEx Mesh Metis Mmg3d Mpeg
NativeFileChooser Netgen ONELAB ONELABMetamodel OpenCascade
OpenGL OptHom Parser Plugins Png Post Salome Solver Taucs
TetGen/BR Tetgen1.5 Voro3D Zlib
Zitat von Bernd Hahnebach :
Hi gmsh folks,
just compiled gmsh on debian jessie. It worked like a charm.
I have libmedc1 installed but gmsh compiled without med
support. How is support for med export activated in cmake?
cheers bernd
___
gmsh mailing list
gmsh@onelab.info
http://onelab.info/mailman/listinfo/gmsh
___
gmsh mailing list
gmsh@onelab.info
http://onelab.info/mailman/listinfo/gmsh
--
Prof. Christophe Geuzaine
University of Liege, Electrical Engineering and Computer Science
http://www.montefiore.ulg.ac.be/~geuzaine
Tetrahedron V, July 4-5 2016: http://tetrahedron.montefiore.ulg.ac.be
Free software: http://gmsh.info | http://getdp.info | http://onelab.info
___
gmsh mailing list
gmsh@onelab.info
http://onelab.info/mailman/listinfo/gmsh
___
gmsh mailing list
gmsh@onelab.info
http://onelab.info/mailman/listinfo/gmsh
--
Prof. Christophe Geuzaine
University of Liege, Electrical Engineering and Computer Science
http://www.montefiore.ulg.ac.be/~geuzaine
Tetrahedron V, July 4-5 2016: http://tetrahedron.montefiore.ulg.ac.be
Free software: http://gmsh.info | http://getdp.info | http://onelab.info
--
Prof. Christophe Geuzaine
University of Liege, Electrical Engineering and Computer Science
http://www.montefiore.ulg.ac.be/~geuzaine
Tetrahedron V, July 4-5 2016: http://tetrahedron.montefiore.ulg.ac.be
Free software: http://gmsh.info | http://getdp.info | http://onelab.info
# Gmsh - Copyright (C) 1997-2016 C. Geuzaine, J.-F. Remacle
#
# See the LICENSE.txt file for license information. Please report all
# bugs and problems to the public mailing list .
cmake_minimum_required(VERSION
