Re: [gmx-users] g_hbond existence matrix

[Kavyashree M]

Thank you for the clarification.

On Fri, Jan 25, 2013 at 12:40 AM, Justin Lemkul  wrote:

>
>
> On 1/24/13 11:03 AM, Kavyashree M wrote:
>
>> Dear users,
>>
>> I have a little confusion -
>> The hbmap.xpm file gives the existence of each hydrogen bond.
>> The file mentions -
>> "   c #FF " /* "None" */,
>> "o  c #FF " /* "Present" */,
>> Meaning -
>> character "" in white colour means Hbond not present
>> character "o" in red colour means Hbond is present.
>>
>> In addition, the file also contains white coloured "o" what is
>> this?
>>
>>
> There are only two characters in the .xpm file, a space and an 'o' as you
> noted above.  The font color that appears in your terminal is whatever you
> have set it to be; there is no significance of different colored letters in
> the .xpm file. There either is a hydrogen bond in a frame (in which case
> you see 'o') or there is not (and thus a blank space).
>
> -Justin
>
> --
> ==**==
>
> Justin A. Lemkul, Ph.D.
> Research Scientist
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.**vt.edu/Pages/Personal/justin
>
> ==**==
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Re: [gmx-users] g_hbond existence matrix

[Justin Lemkul]

On 1/24/13 11:03 AM, Kavyashree M wrote:

Dear users,

I have a little confusion -
The hbmap.xpm file gives the existence of each hydrogen bond.
The file mentions -
"   c #FF " /* "None" */,
"o  c #FF " /* "Present" */,
Meaning -
character "" in white colour means Hbond not present
character "o" in red colour means Hbond is present.

In addition, the file also contains white coloured "o" what is
this?



There are only two characters in the .xpm file, a space and an 'o' as you noted 
above.  The font color that appears in your terminal is whatever you have set it 
to be; there is no significance of different colored letters in the .xpm file. 
There either is a hydrogen bond in a frame (in which case you see 'o') or there 
is not (and thus a blank space).


-Justin

--


Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin


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[gmx-users] g_hbond existence matrix

[Kavyashree M]

Dear users,

I have a little confusion -
The hbmap.xpm file gives the existence of each hydrogen bond.
The file mentions -
"   c #FF " /* "None" */,
"o  c #FF " /* "Present" */,
Meaning -
character "" in white colour means Hbond not present
character "o" in red colour means Hbond is present.

In addition, the file also contains white coloured "o" what is
this?

Thank you
Kavya
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