[gmx-users] g_hbond existence matrix
Dear users, I have a little confusion - The hbmap.xpm file gives the existence of each hydrogen bond. The file mentions - c #FF /* None */, o c #FF /* Present */, Meaning - character space in white colour means Hbond not present character o in red colour means Hbond is present. In addition, the file also contains white coloured o what is this? Thank you Kavya -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
Re: [gmx-users] g_hbond existence matrix
On 1/24/13 11:03 AM, Kavyashree M wrote: Dear users, I have a little confusion - The hbmap.xpm file gives the existence of each hydrogen bond. The file mentions - c #FF /* None */, o c #FF /* Present */, Meaning - character space in white colour means Hbond not present character o in red colour means Hbond is present. In addition, the file also contains white coloured o what is this? There are only two characters in the .xpm file, a space and an 'o' as you noted above. The font color that appears in your terminal is whatever you have set it to be; there is no significance of different colored letters in the .xpm file. There either is a hydrogen bond in a frame (in which case you see 'o') or there is not (and thus a blank space). -Justin -- Justin A. Lemkul, Ph.D. Research Scientist Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
Re: [gmx-users] g_hbond existence matrix
Thank you for the clarification. On Fri, Jan 25, 2013 at 12:40 AM, Justin Lemkul jalem...@vt.edu wrote: On 1/24/13 11:03 AM, Kavyashree M wrote: Dear users, I have a little confusion - The hbmap.xpm file gives the existence of each hydrogen bond. The file mentions - c #FF /* None */, o c #FF /* Present */, Meaning - character space in white colour means Hbond not present character o in red colour means Hbond is present. In addition, the file also contains white coloured o what is this? There are only two characters in the .xpm file, a space and an 'o' as you noted above. The font color that appears in your terminal is whatever you have set it to be; there is no significance of different colored letters in the .xpm file. There either is a hydrogen bond in a frame (in which case you see 'o') or there is not (and thus a blank space). -Justin -- ==**== Justin A. Lemkul, Ph.D. Research Scientist Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080 http://www.bevanlab.biochem.**vt.edu/Pages/Personal/justinhttp://www.bevanlab.biochem.vt.edu/Pages/Personal/justin ==**== -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/**mailman/listinfo/gmx-usershttp://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/** Support/Mailing_Lists/Searchhttp://www.gromacs.org/Support/Mailing_Lists/Searchbefore posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/**Support/Mailing_Listshttp://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
