Re: [gpc-informatics] #31: data elements for ALS cohort characterization
#31: data elements for ALS cohort characterization -+ Reporter: dconnolly| Owner: dconnolly Type: design-issue | Status: assigned Priority: major| Milestone: data-domains2 Component: data-stds| Resolution: Keywords: als-cohort methods-core | Blocked By: 63 Blocking: | -+ Changes (by dconnolly): * cc: campbell, rwaitman (removed) * cc: gpc-dev@…, tshireman (added) Comment: Replying to [comment:12 dconnolly]: ... I'm not entirely sure that it's entirely free of sensitive details, so I'm not sure how to share it more widely. I made a new folder in the PCORNet Central desktop and put my work there: [https://pcornet.centraldesktop.com/c4gpc/folder/4029536/#folder:4029536 Methods Core Cohort Characterization] Wendy, you might want to share your work there too. -- Ticket URL: http://informatics.gpcnetwork.org/trac/Project/ticket/31#comment:13 gpc-informatics http://informatics.gpcnetwork.org/ Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev
Re: [gpc-informatics] #31: data elements for ALS cohort characterization
#31: data elements for ALS cohort characterization -+ Reporter: dconnolly| Owner: tshireman Type: design-issue | Status: assigned Priority: major| Milestone: data-domains2 Component: data-stds| Resolution: Keywords: als-cohort methods-core | Blocked By: 63 Blocking: | -+ Changes (by dconnolly): * owner: dconnolly = tshireman Comment: Dr. Shireman, In the July 14 MethodsCore call we talked about having you attend the next ALS call to discuss things like what **physical exam** from section 6 of the [wiki:WikiStart#GPCProposal GPC proposal] mean (cf. comment:11). For the call in details, see: - [http://www.mail-archive.com/gpc-als@listserv.kumc.edu/msg00047.html ALS call July 25 11am] Kieran, Russ plans to attend, as well as several others from the DevTeams: Phillip Reeder, Jim !McClay, someone from Wisconsin, Glenn Bushee. I wonder how to get this on the agenda. I'll try you by phone. -- Ticket URL: http://informatics.gpcnetwork.org/trac/Project/ticket/31#comment:14 gpc-informatics http://informatics.gpcnetwork.org/ Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev
[gpc-informatics] #146: map CDM-in-i2b2 to existing i2b2 data and/or ontologies
#146: map CDM-in-i2b2 to existing i2b2 data and/or ontologies --+-- Reporter: dconnolly| Owner: dconnolly Type: enhancement | Status: new Priority: major| Milestone: initial-data-domains Component: data-stds| Keywords: Blocked By: | Blocking: --+-- splitting the map CDM-in-i2b2 to existing i2b2 data and/or ontologies part out of #109. See especially ticket:109#comment:14 Strategies may vary from site to site. For example: - UNMC can deploy changes to their EMR quickly enough to embed mappings there, so that their i2b2 concept codes are based on standard terms (e.g. LOINC:xyz); so all they have to do is put those concept codes in the `c_basecode` column of the CDM-in-i2b2 metadata rows. - KUMC doesn't expect to deploy mappings in their EMR until later in the project, so their i2b2 concept codes are those codes native to the ERM (e.g. COMPONENT_ID:nnn). These component IDs can be assigned to children of the CDM-in-i2b2 concept paths. In either case, a query that uses the CDM-in-i2b2 terminology will find the relevant patients and data. -- Ticket URL: http://informatics.gpcnetwork.org/trac/Project/ticket/146 gpc-informatics http://informatics.gpcnetwork.org/ Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev
Re: [gpc-informatics] #109: represent PCORI CDM terminology as i2b2 metadata (was: mapping to PCORI CDM (aka mini-sentinel data model))
#109: represent PCORI CDM terminology as i2b2 metadata --+--- Reporter: rwaitman | Owner: dconnolly Type: enhancement | Status: accepted Priority: major | Milestone: initial-data-domains Component: data-sharing | Resolution: Keywords:| Blocked By: 89 Blocking: 145, 146 | --+--- Changes (by dconnolly): * cc: mhoag, ngraham, campbell, hhickman (removed) * cc: gpc-dev@… (added) * blocking: 145 = 145, 146 Comment: reducing scope of this ticket; see #145, #146 for other parts. approximate a popmednet query by an i2b2 query should probably be its own ticket too, but until we have an example query (#143) it's hardly worth the bother. -- Ticket URL: http://informatics.gpcnetwork.org/trac/Project/ticket/109#comment:16 gpc-informatics http://informatics.gpcnetwork.org/ Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev
Re: [gpc-informatics] #144: ETL Annotated Data Dictionary form required by PCORI
#144: ETL Annotated Data Dictionary form required by PCORI -+- Reporter: campbell | Owner: ngraham Type: task | Status: assigned Priority: major| Milestone: data-stds-plan Component: data-stds| Resolution: Keywords: ETL Data Dictionary | Blocked By: 145 Blocking: | -+- Changes (by dconnolly): * owner: dconnolly = ngraham * status: new = assigned -- Ticket URL: http://informatics.gpcnetwork.org/trac/Project/ticket/144#comment:3 gpc-informatics http://informatics.gpcnetwork.org/ Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev
Re: [gpc-informatics] #144: ETL Annotated Data Dictionary form required by PCORI
#144: ETL Annotated Data Dictionary form required by PCORI -+ Reporter: campbell | Owner: ngraham Type: task | Status: assigned Priority: major| Milestone: popmednet Component: data-stds| Resolution: Keywords: ETL Data Dictionary | Blocked By: 145 Blocking: | -+ Changes (by dconnolly): * milestone: data-stds-plan = popmednet Comment: milestone:data-stds-plan (2.3) was submitted July 7. -- Ticket URL: http://informatics.gpcnetwork.org/trac/Project/ticket/144#comment:4 gpc-informatics http://informatics.gpcnetwork.org/ Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev
Re: [gpc-informatics] #145: transform i2b2 query results to PCORNet CDM
#145: transform i2b2 query results to PCORNet CDM --+- Reporter: dconnolly | Owner: dconnolly Type: enhancement | Status: new Priority: major | Milestone: data-stds-plan Component: data-sharing | Resolution: Keywords:| Blocked By: 109 Blocking: 144 | --+- Comment (by dconnolly): milestone:data-stds-plan (2.3) was submitted July 7. -- Ticket URL: http://informatics.gpcnetwork.org/trac/Project/ticket/145#comment:1 gpc-informatics http://informatics.gpcnetwork.org/ Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev
Re: [gpc-informatics] #145: transform i2b2 query results to PCORNet CDM
#145: transform i2b2 query results to PCORNet CDM --+ Reporter: dconnolly | Owner: dconnolly Type: enhancement | Status: new Priority: major | Milestone: popmednet Component: data-sharing | Resolution: Keywords:| Blocked By: 109 Blocking: 144 | --+ Changes (by dconnolly): * milestone: data-stds-plan = popmednet -- Ticket URL: http://informatics.gpcnetwork.org/trac/Project/ticket/145#comment:2 gpc-informatics http://informatics.gpcnetwork.org/ Greater Plains Network - Informatics ___ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev
