date:20170504

Re: [gpc-informatics] #444: Pregnancy Status for NEXT-D

2017-05-04 Thread Al'ona Furmanchuk

Then lets wait for Charon to figure out way to make it legal.
I hope counts looks reasonable. At least you do not get more pregnant than
total number in the study sample.

On Thu, May 4, 2017 at 2:54 PM, McNeeley, Todd Alexander <
mcneele...@health.missouri.edu> wrote:

> Since this is a DROC issue, it is sounding like I can’t release any data
> currently.
>
>
>
> *Todd McNeeley*
>
> Programmer, Information Management Team Development
>
> mcneele...@health.missouri.edu  | 573-884-3297 <(573)%20884-3297> direct
> | 573-219-8341 <(573)%20219-8341> mobile
>
> Tiger Institute for Health Innovation | www.tiger-institute.org
>
> P PLEASE CONSIDER THE ENVIRONMENT BEFORE PRINTING THIS EMAIL
>
>
>
> *From:* Michelle Coady PhD [mailto:co...@umn.edu]
> *Sent:* Thursday, May 4, 2017 2:18 PM
> *To:* Al'ona Furmanchuk 
> *Cc:* Mosa, Abu S. ; McNeeley, Todd Alexander <
> mcneele...@health.missouri.edu>;  <
> gpc-dev@listserv.kumc.edu>; Charon Gladfelter  northwestern.edu>; Bernard Black 
>
> *Subject:* Re: [gpc-informatics] #444: Pregnancy Status for NEXT-D
>
>
>
> this is a DROC issue, versus Dev
>
>
>
> On Thu, May 4, 2017 at 1:59 PM, Al'ona Furmanchuk <
> furmanc...@icnanotox.org> wrote:
>
> Hi, All.
>
> I asked Charon (NU coordinator). She will let us know on protocol on
> this case.
>
>
>
> Thank you.
>
> Alona.
>
>
>
> On Thu, May 4, 2017 at 1:48 PM, Al'ona Furmanchuk <
> furmanc...@icnanotox.org> wrote:
>
> Mosa, you are right.
>
> In this case counts are de-identified data.
>
> 1.Those are  just two numbers: total number of people in study sample and
> number of pregnant people.
>
> 2. Longitudinal representation of counts is how many people is present in
> those two categories on monthly basis. Those are also aggregated data type
> since not linkable to single person information. In fact. this part  could
> be presented at meeting as graphs.
>
>
>
> Todd, are you in? If so, tell me what code is comfy for you to use for
> conversion of data elements into graphs. I will modify my Matlab post
> processing code accordingly. Please, give me couple of options.
>
>
>
>
>
> Thank you.
>
> Alona.
>
>
>
>
>
>
>
>
>
> On Thu, May 4, 2017 at 1:28 PM, Mosa, Abu S. 
> wrote:
>
> Hi Mei,
>
>
>
> I think counts are considered as de-identified data. Data request and
> release process is described here: http://gpcnetwork.org/sites/
> default/files/documents/GPC%20Query%20Data%20Process%20Flowchart.pdf
>
>
>
> Regards,
>
> Dr. Abu Saleh Mohammad Mosa, MS, PhD
>
> Director, Research Informatics
>
> University of Missouri School of Medicine
>
> Assistant Research Professor of Health Informatics
>
> Health Management and Informatics
>
> One Hospital Drive, NW505, DC018.00
>
> Columbia, MO 65212
>
> Phone: 573-882-8349 <(573)%20882-8349>
>
> Email: mo...@health.missouri.edu
>
> Web: medicine.missouri.edu | hmi.missouri.edu
>
>
>
> *From:* Mei Liu [mailto:mei...@kumc.edu]
> *Sent:* Thursday, May 04, 2017 12:30 PM
> *To:* Mosa, Abu S. ; Al'ona Furmanchuk <
> furmanc...@icnanotox.org>;  <
> gpc-dev@listserv.kumc.edu>
> *Cc:* McNeeley, Todd Alexander ;
> Satyender Goel ; Lindsey Lynne Cook <
> lindsey.c...@northwestern.edu>; Bernard Black 
>
>
> *Subject:* RE: [gpc-informatics] #444: Pregnancy Status for NEXT-D
>
>
>
> Hi Mosa,
>
>
>
>   Plotting the counts require a GPC DROC?
>
>
>
> Mei
>
>
>
> *From:* Gpc-dev [mailto:gpc-dev-boun...@listserv.kumc.edu
> ] *On Behalf Of *Mosa, Abu S.
> *Sent:* Thursday, May 04, 2017 12:19 PM
> *To:* Al'ona Furmanchuk; 
> *Cc:* McNeeley, Todd Alexander; Satyender Goel; Lindsey Lynne Cook;
> Bernard Black
> *Subject:* RE: [gpc-informatics] #444: Pregnancy Status for NEXT-D
>
>
>
> Hi Alona,
>
>
>
> I think data request needs to go through GPC DROC and release of data
> needs to be done by GPC Honest Broker.
>
>
>
> Regards,
>
> Dr. Abu Saleh Mohammad Mosa, MS, PhD
>
> Director, Research Informatics
>
> University of Missouri School of Medicine
>
> Assistant Research Professor of Health Informatics
>
> Health Management and Informatics
>
> One Hospital Drive, NW505, DC018.00
>
> Columbia, MO 65212
>
> Phone: 573-882-8349 <(573)%20882-8349>
>
> Email: mo...@health.missouri.edu
>
> Web: medicine.missouri.edu | hmi.missouri.edu
>
>
>
> *From:* Gpc-dev [mailto:gpc-dev-boun...@listserv.kumc.edu
> ] *On Behalf Of *Al'ona Furmanchuk
> *Sent:* Thursday, May 04, 2017 11:20 AM
> *To:*  
> *Cc:* McNeeley, Todd Alexander ; Lindsey
> Lynne Cook ; Satyender Goel <
> s-g...@northwestern.edu>; Bernard Black 
> *Subject:* Re: [gpc-informatics] #444: Pregnancy Status for NEXT-D
>
>
>
> Great job, Todd!
>
> 1. Is it OK to share counts?
>
> 2. Would you mind to add few lines to the code (I will provide those) in
> order to plot those counts as longitudinal data? Would be nice to show your
> and our plots in our in-person meeting.
>
>
>
>
>
> Thank you.
>
> Alona.
>
>
>
> On Thu, May 4, 2017 at 11:12 AM, GPC Informatics  wrote:
>
> #444: Pregnancy Status for NEXT-D
> --+---
>  Reporte

RE: [gpc-informatics] #444: Pregnancy Status for NEXT-D

2017-05-04 Thread McNeeley, Todd Alexander

Since this is a DROC issue, it is sounding like I can’t release any data 
currently.

Todd McNeeley
Programmer, Information Management Team Development
mcneele...@health.missouri.edu  | 
573-884-3297 direct | 573-219-8341 mobile
Tiger Institute for Health Innovation | 
www.tiger-institute.org
P PLEASE CONSIDER THE ENVIRONMENT BEFORE PRINTING THIS EMAIL

From: Michelle Coady PhD [mailto:co...@umn.edu]
Sent: Thursday, May 4, 2017 2:18 PM
To: Al'ona Furmanchuk 
Cc: Mosa, Abu S. ; McNeeley, Todd Alexander 
;  
; Charon Gladfelter 
; Bernard Black 
Subject: Re: [gpc-informatics] #444: Pregnancy Status for NEXT-D

this is a DROC issue, versus Dev

On Thu, May 4, 2017 at 1:59 PM, Al'ona Furmanchuk 
mailto:furmanc...@icnanotox.org>> wrote:
Hi, All.
I asked Charon (NU coordinator). She will let us know on protocol on this case.

Thank you.
Alona.

On Thu, May 4, 2017 at 1:48 PM, Al'ona Furmanchuk 
mailto:furmanc...@icnanotox.org>> wrote:
Mosa, you are right.
In this case counts are de-identified data.
1.Those are  just two numbers: total number of people in study sample and 
number of pregnant people.
2. Longitudinal representation of counts is how many people is present in those 
two categories on monthly basis. Those are also aggregated data type since not 
linkable to single person information. In fact. this part  could be presented 
at meeting as graphs.

Todd, are you in? If so, tell me what code is comfy for you to use for 
conversion of data elements into graphs. I will modify my Matlab post 
processing code accordingly. Please, give me couple of options.


Thank you.
Alona.




On Thu, May 4, 2017 at 1:28 PM, Mosa, Abu S. 
mailto:mo...@health.missouri.edu>> wrote:
Hi Mei,

I think counts are considered as de-identified data. Data request and release 
process is described here: 
http://gpcnetwork.org/sites/default/files/documents/GPC%20Query%20Data%20Process%20Flowchart.pdf

Regards,
Dr. Abu Saleh Mohammad Mosa, MS, PhD
Director, Research Informatics
University of Missouri School of Medicine
Assistant Research Professor of Health Informatics
Health Management and Informatics
One Hospital Drive, NW505, DC018.00
Columbia, MO 65212
Phone: 573-882-8349
Email: mo...@health.missouri.edu
Web: medicine.missouri.edu | 
hmi.missouri.edu

From: Mei Liu [mailto:mei...@kumc.edu]
Sent: Thursday, May 04, 2017 12:30 PM
To: Mosa, Abu S. mailto:mo...@health.missouri.edu>>; 
Al'ona Furmanchuk mailto:furmanc...@icnanotox.org>>; 
mailto:gpc-dev@listserv.kumc.edu>> 
mailto:gpc-dev@listserv.kumc.edu>>
Cc: McNeeley, Todd Alexander 
mailto:mcneele...@health.missouri.edu>>; 
Satyender Goel mailto:s-g...@northwestern.edu>>; 
Lindsey Lynne Cook 
mailto:lindsey.c...@northwestern.edu>>; Bernard 
Black mailto:bbl...@northwestern.edu>>

Subject: RE: [gpc-informatics] #444: Pregnancy Status for NEXT-D

Hi Mosa,

  Plotting the counts require a GPC DROC?

Mei

From: Gpc-dev [mailto:gpc-dev-boun...@listserv.kumc.edu] On Behalf Of Mosa, Abu 
S.
Sent: Thursday, May 04, 2017 12:19 PM
To: Al'ona Furmanchuk; 
mailto:gpc-dev@listserv.kumc.edu>>
Cc: McNeeley, Todd Alexander; Satyender Goel; Lindsey Lynne Cook; Bernard Black
Subject: RE: [gpc-informatics] #444: Pregnancy Status for NEXT-D

Hi Alona,

I think data request needs to go through GPC DROC and release of data needs to 
be done by GPC Honest Broker.

Regards,
Dr. Abu Saleh Mohammad Mosa, MS, PhD
Director, Research Informatics
University of Missouri School of Medicine
Assistant Research Professor of Health Informatics
Health Management and Informatics
One Hospital Drive, NW505, DC018.00
Columbia, MO 65212
Phone: 573-882-8349
Email: mo...@health.missouri.edu
Web: medicine.missouri.edu | 
hmi.missouri.edu

From: Gpc-dev [mailto:gpc-dev-boun...@listserv.kumc.edu] On Behalf Of Al'ona 
Furmanchuk
Sent: Thursday, May 04, 2017 11:20 AM
To: mailto:gpc-dev@listserv.kumc.edu>> 
mailto:gpc-dev@listserv.kumc.edu>>
Cc: McNeeley, Todd Alexander 
mailto:mcneele...@health.missouri.edu>>; 
Lindsey Lynne Cook 
mailto:lindsey.c...@northwestern.edu>>; 
Satyender Goel mailto:s-g...@northwestern.edu>>; 
Bernard Black mailto:bbl...@northwestern.edu>>
Subject: Re: [gpc-informatics] #444: Pregnancy Status for NEXT-D

Great job, Todd!
1. Is it OK to share counts?
2. Would you mind to add few lines to the code (I will provide those) in order 
to plot those counts as longitudinal data? Would be nice to show your and our 
plots in our in-person meeting.


Thank you.
Alona.

On Thu, May 4, 2017 at 11:12 AM, GPC Informatics 
mailto:d...@madmode.com>> wrote:
#444: Pregnancy Status for NEXT-D
--+---
 Reporter:  afurmanchuck  |   Owner:  tmcneely
 Type:  design-issue  |  Status:  assigned
 Priority:  m

Re: [gpc-informatics] #444: Pregnancy Status for NEXT-D

2017-05-04 Thread Michelle Coady PhD

this is a DROC issue, versus Dev

On Thu, May 4, 2017 at 1:59 PM, Al'ona Furmanchuk 
wrote:

> Hi, All.
> I asked Charon (NU coordinator). She will let us know on protocol on
> this case.
>
> Thank you.
> Alona.
>
> On Thu, May 4, 2017 at 1:48 PM, Al'ona Furmanchuk <
> furmanc...@icnanotox.org> wrote:
>
>> Mosa, you are right.
>> In this case counts are de-identified data.
>> 1.Those are  just two numbers: total number of people in study sample and
>> number of pregnant people.
>> 2. Longitudinal representation of counts is how many people is present in
>> those two categories on monthly basis. Those are also aggregated data type
>> since not linkable to single person information. In fact. this part  could
>> be presented at meeting as graphs.
>>
>> Todd, are you in? If so, tell me what code is comfy for you to use for
>> conversion of data elements into graphs. I will modify my Matlab post
>> processing code accordingly. Please, give me couple of options.
>>
>>
>> Thank you.
>> Alona.
>>
>>
>>
>>
>> On Thu, May 4, 2017 at 1:28 PM, Mosa, Abu S. 
>> wrote:
>>
>>> Hi Mei,
>>>
>>>
>>>
>>> I think counts are considered as de-identified data. Data request and
>>> release process is described here: http://gpcnetwork.org/sites/de
>>> fault/files/documents/GPC%20Query%20Data%20Process%20Flowchart.pdf
>>>
>>>
>>>
>>> Regards,
>>>
>>> Dr. Abu Saleh Mohammad Mosa, MS, PhD
>>>
>>> Director, Research Informatics
>>>
>>> University of Missouri School of Medicine
>>>
>>> Assistant Research Professor of Health Informatics
>>>
>>> Health Management and Informatics
>>>
>>> One Hospital Drive, NW505, DC018.00
>>>
>>> Columbia, MO 65212
>>>
>>> Phone: 573-882-8349 <(573)%20882-8349>
>>>
>>> Email: mo...@health.missouri.edu
>>>
>>> Web: medicine.missouri.edu | hmi.missouri.edu
>>>
>>>
>>>
>>> *From:* Mei Liu [mailto:mei...@kumc.edu]
>>> *Sent:* Thursday, May 04, 2017 12:30 PM
>>> *To:* Mosa, Abu S. ; Al'ona Furmanchuk <
>>> furmanc...@icnanotox.org>;  <
>>> gpc-dev@listserv.kumc.edu>
>>> *Cc:* McNeeley, Todd Alexander ;
>>> Satyender Goel ; Lindsey Lynne Cook <
>>> lindsey.c...@northwestern.edu>; Bernard Black 
>>>
>>> *Subject:* RE: [gpc-informatics] #444: Pregnancy Status for NEXT-D
>>>
>>>
>>>
>>> Hi Mosa,
>>>
>>>
>>>
>>>   Plotting the counts require a GPC DROC?
>>>
>>>
>>>
>>> Mei
>>>
>>>
>>>
>>> *From:* Gpc-dev [mailto:gpc-dev-boun...@listserv.kumc.edu
>>> ] *On Behalf Of *Mosa, Abu S.
>>> *Sent:* Thursday, May 04, 2017 12:19 PM
>>> *To:* Al'ona Furmanchuk; 
>>> *Cc:* McNeeley, Todd Alexander; Satyender Goel; Lindsey Lynne Cook;
>>> Bernard Black
>>> *Subject:* RE: [gpc-informatics] #444: Pregnancy Status for NEXT-D
>>>
>>>
>>>
>>> Hi Alona,
>>>
>>>
>>>
>>> I think data request needs to go through GPC DROC and release of data
>>> needs to be done by GPC Honest Broker.
>>>
>>>
>>>
>>> Regards,
>>>
>>> Dr. Abu Saleh Mohammad Mosa, MS, PhD
>>>
>>> Director, Research Informatics
>>>
>>> University of Missouri School of Medicine
>>>
>>> Assistant Research Professor of Health Informatics
>>>
>>> Health Management and Informatics
>>>
>>> One Hospital Drive, NW505, DC018.00
>>>
>>> Columbia, MO 65212
>>>
>>> Phone: 573-882-8349 <(573)%20882-8349>
>>>
>>> Email: mo...@health.missouri.edu
>>>
>>> Web: medicine.missouri.edu | hmi.missouri.edu
>>>
>>>
>>>
>>> *From:* Gpc-dev [mailto:gpc-dev-boun...@listserv.kumc.edu
>>> ] *On Behalf Of *Al'ona Furmanchuk
>>> *Sent:* Thursday, May 04, 2017 11:20 AM
>>> *To:*  
>>> *Cc:* McNeeley, Todd Alexander ;
>>> Lindsey Lynne Cook ; Satyender Goel <
>>> s-g...@northwestern.edu>; Bernard Black 
>>> *Subject:* Re: [gpc-informatics] #444: Pregnancy Status for NEXT-D
>>>
>>>
>>>
>>> Great job, Todd!
>>>
>>> 1. Is it OK to share counts?
>>>
>>> 2. Would you mind to add few lines to the code (I will provide those) in
>>> order to plot those counts as longitudinal data? Would be nice to show your
>>> and our plots in our in-person meeting.
>>>
>>>
>>>
>>>
>>>
>>> Thank you.
>>>
>>> Alona.
>>>
>>>
>>>
>>> On Thu, May 4, 2017 at 11:12 AM, GPC Informatics 
>>> wrote:
>>>
>>> #444: Pregnancy Status for NEXT-D
>>> --+---
>>>  Reporter:  afurmanchuck  |   Owner:  tmcneely
>>>  Type:  design-issue  |  Status:  assigned
>>>  Priority:  major |   Milestone:  next-d
>>> Component:  data-stds |  Resolution:
>>>  Keywords:|  Blocked By:
>>>  Blocking:  546   |
>>> --+---
>>>
>>> Comment (by tmcneeley):
>>>
>>>  I modified the queries to reflect my database and schema and table
>>> names.
>>>  After the small modifications, I was able to successfully run the first
>>>  two sections of the file, and return the counts. Is anything else needed
>>>  for this?
>>>
>>> --
>>> Ticket URL: >> omment:17>
>>>
>>> gpc-informatics 
>>> Greater Plains Network - Informatics
>>>
>>>
>>>
>>>
>>> --
>>

Re: [gpc-informatics] #444: Pregnancy Status for NEXT-D

2017-05-04 Thread Al'ona Furmanchuk

Hi, All.
I asked Charon (NU coordinator). She will let us know on protocol on
this case.

Thank you.
Alona.

On Thu, May 4, 2017 at 1:48 PM, Al'ona Furmanchuk 
wrote:

> Mosa, you are right.
> In this case counts are de-identified data.
> 1.Those are  just two numbers: total number of people in study sample and
> number of pregnant people.
> 2. Longitudinal representation of counts is how many people is present in
> those two categories on monthly basis. Those are also aggregated data type
> since not linkable to single person information. In fact. this part  could
> be presented at meeting as graphs.
>
> Todd, are you in? If so, tell me what code is comfy for you to use for
> conversion of data elements into graphs. I will modify my Matlab post
> processing code accordingly. Please, give me couple of options.
>
>
> Thank you.
> Alona.
>
>
>
>
> On Thu, May 4, 2017 at 1:28 PM, Mosa, Abu S. 
> wrote:
>
>> Hi Mei,
>>
>>
>>
>> I think counts are considered as de-identified data. Data request and
>> release process is described here: http://gpcnetwork.org/sites/de
>> fault/files/documents/GPC%20Query%20Data%20Process%20Flowchart.pdf
>>
>>
>>
>> Regards,
>>
>> Dr. Abu Saleh Mohammad Mosa, MS, PhD
>>
>> Director, Research Informatics
>>
>> University of Missouri School of Medicine
>>
>> Assistant Research Professor of Health Informatics
>>
>> Health Management and Informatics
>>
>> One Hospital Drive, NW505, DC018.00
>>
>> Columbia, MO 65212
>>
>> Phone: 573-882-8349 <(573)%20882-8349>
>>
>> Email: mo...@health.missouri.edu
>>
>> Web: medicine.missouri.edu | hmi.missouri.edu
>>
>>
>>
>> *From:* Mei Liu [mailto:mei...@kumc.edu]
>> *Sent:* Thursday, May 04, 2017 12:30 PM
>> *To:* Mosa, Abu S. ; Al'ona Furmanchuk <
>> furmanc...@icnanotox.org>;  <
>> gpc-dev@listserv.kumc.edu>
>> *Cc:* McNeeley, Todd Alexander ;
>> Satyender Goel ; Lindsey Lynne Cook <
>> lindsey.c...@northwestern.edu>; Bernard Black 
>>
>> *Subject:* RE: [gpc-informatics] #444: Pregnancy Status for NEXT-D
>>
>>
>>
>> Hi Mosa,
>>
>>
>>
>>   Plotting the counts require a GPC DROC?
>>
>>
>>
>> Mei
>>
>>
>>
>> *From:* Gpc-dev [mailto:gpc-dev-boun...@listserv.kumc.edu
>> ] *On Behalf Of *Mosa, Abu S.
>> *Sent:* Thursday, May 04, 2017 12:19 PM
>> *To:* Al'ona Furmanchuk; 
>> *Cc:* McNeeley, Todd Alexander; Satyender Goel; Lindsey Lynne Cook;
>> Bernard Black
>> *Subject:* RE: [gpc-informatics] #444: Pregnancy Status for NEXT-D
>>
>>
>>
>> Hi Alona,
>>
>>
>>
>> I think data request needs to go through GPC DROC and release of data
>> needs to be done by GPC Honest Broker.
>>
>>
>>
>> Regards,
>>
>> Dr. Abu Saleh Mohammad Mosa, MS, PhD
>>
>> Director, Research Informatics
>>
>> University of Missouri School of Medicine
>>
>> Assistant Research Professor of Health Informatics
>>
>> Health Management and Informatics
>>
>> One Hospital Drive, NW505, DC018.00
>>
>> Columbia, MO 65212
>>
>> Phone: 573-882-8349 <(573)%20882-8349>
>>
>> Email: mo...@health.missouri.edu
>>
>> Web: medicine.missouri.edu | hmi.missouri.edu
>>
>>
>>
>> *From:* Gpc-dev [mailto:gpc-dev-boun...@listserv.kumc.edu
>> ] *On Behalf Of *Al'ona Furmanchuk
>> *Sent:* Thursday, May 04, 2017 11:20 AM
>> *To:*  
>> *Cc:* McNeeley, Todd Alexander ; Lindsey
>> Lynne Cook ; Satyender Goel <
>> s-g...@northwestern.edu>; Bernard Black 
>> *Subject:* Re: [gpc-informatics] #444: Pregnancy Status for NEXT-D
>>
>>
>>
>> Great job, Todd!
>>
>> 1. Is it OK to share counts?
>>
>> 2. Would you mind to add few lines to the code (I will provide those) in
>> order to plot those counts as longitudinal data? Would be nice to show your
>> and our plots in our in-person meeting.
>>
>>
>>
>>
>>
>> Thank you.
>>
>> Alona.
>>
>>
>>
>> On Thu, May 4, 2017 at 11:12 AM, GPC Informatics 
>> wrote:
>>
>> #444: Pregnancy Status for NEXT-D
>> --+---
>>  Reporter:  afurmanchuck  |   Owner:  tmcneely
>>  Type:  design-issue  |  Status:  assigned
>>  Priority:  major |   Milestone:  next-d
>> Component:  data-stds |  Resolution:
>>  Keywords:|  Blocked By:
>>  Blocking:  546   |
>> --+---
>>
>> Comment (by tmcneeley):
>>
>>  I modified the queries to reflect my database and schema and table names.
>>  After the small modifications, I was able to successfully run the first
>>  two sections of the file, and return the counts. Is anything else needed
>>  for this?
>>
>> --
>> Ticket URL: > comment:17>
>>
>> gpc-informatics 
>> Greater Plains Network - Informatics
>>
>>
>>
>>
>> --
>>
>> Al’ona Furmanchuk, Ph.D.
>> Research Associate
>>
>> Center for Health Information Partnerships,
>> Northwestern University, Feinberg School of Medicine
>>
>> 633 N. Saint Clair Street, 20th floor,
>> Chicago, IL 60611
>>
>> Web: http://furmanchuk.com/
>> E-mail: alona.furmanc...@northwestern.edu 
>>
>> Phone: 312-503-34

Re: [gpc-informatics] #444: Pregnancy Status for NEXT-D

2017-05-04 Thread Al'ona Furmanchuk

Mosa, you are right.
In this case counts are de-identified data.
1.Those are  just two numbers: total number of people in study sample and
number of pregnant people.
2. Longitudinal representation of counts is how many people is present in
those two categories on monthly basis. Those are also aggregated data type
since not linkable to single person information. In fact. this part  could
be presented at meeting as graphs.

Todd, are you in? If so, tell me what code is comfy for you to use for
conversion of data elements into graphs. I will modify my Matlab post
processing code accordingly. Please, give me couple of options.


Thank you.
Alona.




On Thu, May 4, 2017 at 1:28 PM, Mosa, Abu S. 
wrote:

> Hi Mei,
>
>
>
> I think counts are considered as de-identified data. Data request and
> release process is described here: http://gpcnetwork.org/sites/
> default/files/documents/GPC%20Query%20Data%20Process%20Flowchart.pdf
>
>
>
> Regards,
>
> Dr. Abu Saleh Mohammad Mosa, MS, PhD
>
> Director, Research Informatics
>
> University of Missouri School of Medicine
>
> Assistant Research Professor of Health Informatics
>
> Health Management and Informatics
>
> One Hospital Drive, NW505, DC018.00
>
> Columbia, MO 65212
>
> Phone: 573-882-8349 <(573)%20882-8349>
>
> Email: mo...@health.missouri.edu
>
> Web: medicine.missouri.edu | hmi.missouri.edu
>
>
>
> *From:* Mei Liu [mailto:mei...@kumc.edu]
> *Sent:* Thursday, May 04, 2017 12:30 PM
> *To:* Mosa, Abu S. ; Al'ona Furmanchuk <
> furmanc...@icnanotox.org>;  <
> gpc-dev@listserv.kumc.edu>
> *Cc:* McNeeley, Todd Alexander ;
> Satyender Goel ; Lindsey Lynne Cook <
> lindsey.c...@northwestern.edu>; Bernard Black 
>
> *Subject:* RE: [gpc-informatics] #444: Pregnancy Status for NEXT-D
>
>
>
> Hi Mosa,
>
>
>
>   Plotting the counts require a GPC DROC?
>
>
>
> Mei
>
>
>
> *From:* Gpc-dev [mailto:gpc-dev-boun...@listserv.kumc.edu
> ] *On Behalf Of *Mosa, Abu S.
> *Sent:* Thursday, May 04, 2017 12:19 PM
> *To:* Al'ona Furmanchuk; 
> *Cc:* McNeeley, Todd Alexander; Satyender Goel; Lindsey Lynne Cook;
> Bernard Black
> *Subject:* RE: [gpc-informatics] #444: Pregnancy Status for NEXT-D
>
>
>
> Hi Alona,
>
>
>
> I think data request needs to go through GPC DROC and release of data
> needs to be done by GPC Honest Broker.
>
>
>
> Regards,
>
> Dr. Abu Saleh Mohammad Mosa, MS, PhD
>
> Director, Research Informatics
>
> University of Missouri School of Medicine
>
> Assistant Research Professor of Health Informatics
>
> Health Management and Informatics
>
> One Hospital Drive, NW505, DC018.00
>
> Columbia, MO 65212
>
> Phone: 573-882-8349 <(573)%20882-8349>
>
> Email: mo...@health.missouri.edu
>
> Web: medicine.missouri.edu | hmi.missouri.edu
>
>
>
> *From:* Gpc-dev [mailto:gpc-dev-boun...@listserv.kumc.edu
> ] *On Behalf Of *Al'ona Furmanchuk
> *Sent:* Thursday, May 04, 2017 11:20 AM
> *To:*  
> *Cc:* McNeeley, Todd Alexander ; Lindsey
> Lynne Cook ; Satyender Goel <
> s-g...@northwestern.edu>; Bernard Black 
> *Subject:* Re: [gpc-informatics] #444: Pregnancy Status for NEXT-D
>
>
>
> Great job, Todd!
>
> 1. Is it OK to share counts?
>
> 2. Would you mind to add few lines to the code (I will provide those) in
> order to plot those counts as longitudinal data? Would be nice to show your
> and our plots in our in-person meeting.
>
>
>
>
>
> Thank you.
>
> Alona.
>
>
>
> On Thu, May 4, 2017 at 11:12 AM, GPC Informatics  wrote:
>
> #444: Pregnancy Status for NEXT-D
> --+---
>  Reporter:  afurmanchuck  |   Owner:  tmcneely
>  Type:  design-issue  |  Status:  assigned
>  Priority:  major |   Milestone:  next-d
> Component:  data-stds |  Resolution:
>  Keywords:|  Blocked By:
>  Blocking:  546   |
> --+---
>
> Comment (by tmcneeley):
>
>  I modified the queries to reflect my database and schema and table names.
>  After the small modifications, I was able to successfully run the first
>  two sections of the file, and return the counts. Is anything else needed
>  for this?
>
> --
> Ticket URL:  ticket/444#comment:17>
>
> gpc-informatics 
> Greater Plains Network - Informatics
>
>
>
>
> --
>
> Al’ona Furmanchuk, Ph.D.
> Research Associate
>
> Center for Health Information Partnerships,
> Northwestern University, Feinberg School of Medicine
>
> 633 N. Saint Clair Street, 20th floor,
> Chicago, IL 60611
>
> Web: http://furmanchuk.com/
> E-mail: alona.furmanc...@northwestern.edu 
>
> Phone: 312-503-34281
>



-- 
Al’ona Furmanchuk, Ph.D.
Research Associate

Center for Health Information Partnerships,
Northwestern University, Feinberg School of Medicine
633 N. Saint Clair Street, 20th floor,
Chicago, IL 60611
Web: http://furmanchuk.com/
E-mail: alona.furmanc...@northwestern.edu 
Phone: 312-503-34281
___
Gpc-dev mailing list
Gpc-dev@lis

RE: [gpc-informatics] #444: Pregnancy Status for NEXT-D

2017-05-04 Thread Mosa, Abu S.

Hi Mei,

I think counts are considered as de-identified data. Data request and release 
process is described here: 
http://gpcnetwork.org/sites/default/files/documents/GPC%20Query%20Data%20Process%20Flowchart.pdf

Regards,
Dr. Abu Saleh Mohammad Mosa, MS, PhD
Director, Research Informatics
University of Missouri School of Medicine
Assistant Research Professor of Health Informatics
Health Management and Informatics
One Hospital Drive, NW505, DC018.00
Columbia, MO 65212
Phone: 573-882-8349
Email: mo...@health.missouri.edu
Web: medicine.missouri.edu | hmi.missouri.edu

From: Mei Liu [mailto:mei...@kumc.edu]
Sent: Thursday, May 04, 2017 12:30 PM
To: Mosa, Abu S. ; Al'ona Furmanchuk 
;  

Cc: McNeeley, Todd Alexander ; Satyender Goel 
; Lindsey Lynne Cook ; 
Bernard Black 
Subject: RE: [gpc-informatics] #444: Pregnancy Status for NEXT-D

Hi Mosa,

  Plotting the counts require a GPC DROC?

Mei

From: Gpc-dev [mailto:gpc-dev-boun...@listserv.kumc.edu] On Behalf Of Mosa, Abu 
S.
Sent: Thursday, May 04, 2017 12:19 PM
To: Al'ona Furmanchuk; 
mailto:gpc-dev@listserv.kumc.edu>>
Cc: McNeeley, Todd Alexander; Satyender Goel; Lindsey Lynne Cook; Bernard Black
Subject: RE: [gpc-informatics] #444: Pregnancy Status for NEXT-D

Hi Alona,

I think data request needs to go through GPC DROC and release of data needs to 
be done by GPC Honest Broker.

Regards,
Dr. Abu Saleh Mohammad Mosa, MS, PhD
Director, Research Informatics
University of Missouri School of Medicine
Assistant Research Professor of Health Informatics
Health Management and Informatics
One Hospital Drive, NW505, DC018.00
Columbia, MO 65212
Phone: 573-882-8349
Email: mo...@health.missouri.edu
Web: medicine.missouri.edu | hmi.missouri.edu

From: Gpc-dev [mailto:gpc-dev-boun...@listserv.kumc.edu] On Behalf Of Al'ona 
Furmanchuk
Sent: Thursday, May 04, 2017 11:20 AM
To: mailto:gpc-dev@listserv.kumc.edu>> 
mailto:gpc-dev@listserv.kumc.edu>>
Cc: McNeeley, Todd Alexander 
mailto:mcneele...@health.missouri.edu>>; 
Lindsey Lynne Cook 
mailto:lindsey.c...@northwestern.edu>>; 
Satyender Goel mailto:s-g...@northwestern.edu>>; 
Bernard Black mailto:bbl...@northwestern.edu>>
Subject: Re: [gpc-informatics] #444: Pregnancy Status for NEXT-D

Great job, Todd!
1. Is it OK to share counts?
2. Would you mind to add few lines to the code (I will provide those) in order 
to plot those counts as longitudinal data? Would be nice to show your and our 
plots in our in-person meeting.


Thank you.
Alona.

On Thu, May 4, 2017 at 11:12 AM, GPC Informatics 
mailto:d...@madmode.com>> wrote:
#444: Pregnancy Status for NEXT-D
--+---
 Reporter:  afurmanchuck  |   Owner:  tmcneely
 Type:  design-issue  |  Status:  assigned
 Priority:  major |   Milestone:  next-d
Component:  data-stds |  Resolution:
 Keywords:|  Blocked By:
 Blocking:  546   |
--+---

Comment (by tmcneeley):

 I modified the queries to reflect my database and schema and table names.
 After the small modifications, I was able to successfully run the first
 two sections of the file, and return the counts. Is anything else needed
 for this?

--
Ticket URL: 

gpc-informatics 
Greater Plains Network - Informatics



--
Al’ona Furmanchuk, Ph.D.
Research Associate

Center for Health Information Partnerships,
Northwestern University, Feinberg School of Medicine
633 N. Saint Clair Street, 20th floor,
Chicago, IL 60611
Web: http://furmanchuk.com/
E-mail: alona.furmanc...@northwestern.edu
Phone: 312-503-34281
___
Gpc-dev mailing list
Gpc-dev@listserv.kumc.edu
http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #444: Pregnancy Status for NEXT-D

2017-05-04 Thread Al'ona Furmanchuk

Hi, Mosa.
I appreciate if you could provide more background on this or link to
manual. I am not familiar with the protocol.
Thank you.
Alona.



On Thu, May 4, 2017 at 12:18 PM, Mosa, Abu S. 
wrote:

> Hi Alona,
>
>
>
> I think data request needs to go through GPC DROC and release of data
> needs to be done by GPC Honest Broker.
>
>
>
> Regards,
>
> Dr. Abu Saleh Mohammad Mosa, MS, PhD
>
> Director, Research Informatics
>
> University of Missouri School of Medicine
>
> Assistant Research Professor of Health Informatics
>
> Health Management and Informatics
>
> One Hospital Drive, NW505, DC018.00
>
> Columbia, MO 65212
>
> Phone: 573-882-8349 <(573)%20882-8349>
>
> Email: mo...@health.missouri.edu
>
> Web: medicine.missouri.edu | hmi.missouri.edu
>
>
>
> *From:* Gpc-dev [mailto:gpc-dev-boun...@listserv.kumc.edu] *On Behalf Of 
> *Al'ona
> Furmanchuk
> *Sent:* Thursday, May 04, 2017 11:20 AM
> *To:*  
> *Cc:* McNeeley, Todd Alexander ; Lindsey
> Lynne Cook ; Satyender Goel <
> s-g...@northwestern.edu>; Bernard Black 
> *Subject:* Re: [gpc-informatics] #444: Pregnancy Status for NEXT-D
>
>
>
> Great job, Todd!
>
> 1. Is it OK to share counts?
>
> 2. Would you mind to add few lines to the code (I will provide those) in
> order to plot those counts as longitudinal data? Would be nice to show your
> and our plots in our in-person meeting.
>
>
>
>
>
> Thank you.
>
> Alona.
>
>
>
> On Thu, May 4, 2017 at 11:12 AM, GPC Informatics  wrote:
>
> #444: Pregnancy Status for NEXT-D
> --+---
>  Reporter:  afurmanchuck  |   Owner:  tmcneely
>  Type:  design-issue  |  Status:  assigned
>  Priority:  major |   Milestone:  next-d
> Component:  data-stds |  Resolution:
>  Keywords:|  Blocked By:
>  Blocking:  546   |
> --+---
>
> Comment (by tmcneeley):
>
>  I modified the queries to reflect my database and schema and table names.
>  After the small modifications, I was able to successfully run the first
>  two sections of the file, and return the counts. Is anything else needed
>  for this?
>
> --
> Ticket URL:  ticket/444#comment:17>
>
> gpc-informatics 
> Greater Plains Network - Informatics
>
>
>
>
> --
>
> Al’ona Furmanchuk, Ph.D.
> Research Associate
>
> Center for Health Information Partnerships,
> Northwestern University, Feinberg School of Medicine
>
> 633 N. Saint Clair Street, 20th floor,
> Chicago, IL 60611
>
> Web: http://furmanchuk.com/
> E-mail: alona.furmanc...@northwestern.edu 
>
> Phone: 312-503-34281
>



-- 
Al’ona Furmanchuk, Ph.D.
Research Associate

Center for Health Information Partnerships,
Northwestern University, Feinberg School of Medicine
633 N. Saint Clair Street, 20th floor,
Chicago, IL 60611
Web: http://furmanchuk.com/
E-mail: alona.furmanc...@northwestern.edu 
Phone: 312-503-34281
___
Gpc-dev mailing list
Gpc-dev@listserv.kumc.edu
http://listserv.kumc.edu/mailman/listinfo/gpc-dev

RE: [gpc-informatics] #444: Pregnancy Status for NEXT-D

2017-05-04 Thread Mei Liu

Hi Mosa,

  Plotting the counts require a GPC DROC?

Mei

From: Gpc-dev [mailto:gpc-dev-boun...@listserv.kumc.edu] On Behalf Of Mosa, Abu 
S.
Sent: Thursday, May 04, 2017 12:19 PM
To: Al'ona Furmanchuk; 
Cc: McNeeley, Todd Alexander; Satyender Goel; Lindsey Lynne Cook; Bernard Black
Subject: RE: [gpc-informatics] #444: Pregnancy Status for NEXT-D

Hi Alona,

I think data request needs to go through GPC DROC and release of data needs to 
be done by GPC Honest Broker.

Regards,
Dr. Abu Saleh Mohammad Mosa, MS, PhD
Director, Research Informatics
University of Missouri School of Medicine
Assistant Research Professor of Health Informatics
Health Management and Informatics
One Hospital Drive, NW505, DC018.00
Columbia, MO 65212
Phone: 573-882-8349
Email: mo...@health.missouri.edu
Web: medicine.missouri.edu | hmi.missouri.edu

From: Gpc-dev [mailto:gpc-dev-boun...@listserv.kumc.edu] On Behalf Of Al'ona 
Furmanchuk
Sent: Thursday, May 04, 2017 11:20 AM
To: mailto:gpc-dev@listserv.kumc.edu>> 
mailto:gpc-dev@listserv.kumc.edu>>
Cc: McNeeley, Todd Alexander 
mailto:mcneele...@health.missouri.edu>>; 
Lindsey Lynne Cook 
mailto:lindsey.c...@northwestern.edu>>; 
Satyender Goel mailto:s-g...@northwestern.edu>>; 
Bernard Black mailto:bbl...@northwestern.edu>>
Subject: Re: [gpc-informatics] #444: Pregnancy Status for NEXT-D

Great job, Todd!
1. Is it OK to share counts?
2. Would you mind to add few lines to the code (I will provide those) in order 
to plot those counts as longitudinal data? Would be nice to show your and our 
plots in our in-person meeting.

Thank you.
Alona.

On Thu, May 4, 2017 at 11:12 AM, GPC Informatics 
mailto:d...@madmode.com>> wrote:
#444: Pregnancy Status for NEXT-D
--+---
 Reporter:  afurmanchuck  |   Owner:  tmcneely
 Type:  design-issue  |  Status:  assigned
 Priority:  major |   Milestone:  next-d
Component:  data-stds |  Resolution:
 Keywords:|  Blocked By:
 Blocking:  546   |
--+---

Comment (by tmcneeley):

 I modified the queries to reflect my database and schema and table names.
 After the small modifications, I was able to successfully run the first
 two sections of the file, and return the counts. Is anything else needed
 for this?

--
Ticket URL: 

gpc-informatics 
Greater Plains Network - Informatics

--
Al’ona Furmanchuk, Ph.D.
Research Associate

Center for Health Information Partnerships,
Northwestern University, Feinberg School of Medicine
633 N. Saint Clair Street, 20th floor,
Chicago, IL 60611
Web: http://furmanchuk.com/
E-mail: alona.furmanc...@northwestern.edu
Phone: 312-503-34281
___
Gpc-dev mailing list
Gpc-dev@listserv.kumc.edu
http://listserv.kumc.edu/mailman/listinfo/gpc-dev

RE: [gpc-informatics] #444: Pregnancy Status for NEXT-D

2017-05-04 Thread Mosa, Abu S.

Hi Alona,

I think data request needs to go through GPC DROC and release of data needs to 
be done by GPC Honest Broker.

Regards,
Dr. Abu Saleh Mohammad Mosa, MS, PhD
Director, Research Informatics
University of Missouri School of Medicine
Assistant Research Professor of Health Informatics
Health Management and Informatics
One Hospital Drive, NW505, DC018.00
Columbia, MO 65212
Phone: 573-882-8349
Email: mo...@health.missouri.edu
Web: medicine.missouri.edu | hmi.missouri.edu

From: Gpc-dev [mailto:gpc-dev-boun...@listserv.kumc.edu] On Behalf Of Al'ona 
Furmanchuk
Sent: Thursday, May 04, 2017 11:20 AM
To:  
Cc: McNeeley, Todd Alexander ; Lindsey Lynne 
Cook ; Satyender Goel ; 
Bernard Black 
Subject: Re: [gpc-informatics] #444: Pregnancy Status for NEXT-D

Great job, Todd!
1. Is it OK to share counts?
2. Would you mind to add few lines to the code (I will provide those) in order 
to plot those counts as longitudinal data? Would be nice to show your and our 
plots in our in-person meeting.


Thank you.
Alona.

On Thu, May 4, 2017 at 11:12 AM, GPC Informatics 
mailto:d...@madmode.com>> wrote:
#444: Pregnancy Status for NEXT-D
--+---
 Reporter:  afurmanchuck  |   Owner:  tmcneely
 Type:  design-issue  |  Status:  assigned
 Priority:  major |   Milestone:  next-d
Component:  data-stds |  Resolution:
 Keywords:|  Blocked By:
 Blocking:  546   |
--+---

Comment (by tmcneeley):

 I modified the queries to reflect my database and schema and table names.
 After the small modifications, I was able to successfully run the first
 two sections of the file, and return the counts. Is anything else needed
 for this?

--
Ticket URL: 

gpc-informatics 
Greater Plains Network - Informatics



--
Al’ona Furmanchuk, Ph.D.
Research Associate

Center for Health Information Partnerships,
Northwestern University, Feinberg School of Medicine
633 N. Saint Clair Street, 20th floor,
Chicago, IL 60611
Web: http://furmanchuk.com/
E-mail: alona.furmanc...@northwestern.edu
Phone: 312-503-34281
___
Gpc-dev mailing list
Gpc-dev@listserv.kumc.edu
http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #444: Pregnancy Status for NEXT-D

2017-05-04 Thread Al'ona Furmanchuk

Great job, Todd!
1. Is it OK to share counts?
2. Would you mind to add few lines to the code (I will provide those) in
order to plot those counts as longitudinal data? Would be nice to show your
and our plots in our in-person meeting.

Thank you.
Alona.

On Thu, May 4, 2017 at 11:12 AM, GPC Informatics  wrote:

> #444: Pregnancy Status for NEXT-D
> --+---
>  Reporter:  afurmanchuck  |   Owner:  tmcneely
>  Type:  design-issue  |  Status:  assigned
>  Priority:  major |   Milestone:  next-d
> Component:  data-stds |  Resolution:
>  Keywords:|  Blocked By:
>  Blocking:  546   |
> --+---
>
> Comment (by tmcneeley):
>
>  I modified the queries to reflect my database and schema and table names.
>  After the small modifications, I was able to successfully run the first
>  two sections of the file, and return the counts. Is anything else needed
>  for this?
>
> --
> Ticket URL:  ticket/444#comment:17>
> gpc-informatics 
> Greater Plains Network - Informatics
>

-- 
Al’ona Furmanchuk, Ph.D.
Research Associate

Center for Health Information Partnerships,
Northwestern University, Feinberg School of Medicine
633 N. Saint Clair Street, 20th floor,
Chicago, IL 60611
Web: http://furmanchuk.com/
E-mail: alona.furmanc...@northwestern.edu 
Phone: 312-503-34281
___
Gpc-dev mailing list
Gpc-dev@listserv.kumc.edu
http://listserv.kumc.edu/mailman/listinfo/gpc-dev

Re: [gpc-informatics] #545: Study sample and DM sample definition for next-d

2017-05-04 Thread GPC Informatics

#545: Study sample and DM sample definition for next-d
--+-
 Reporter:  dconnolly |   Owner:  meiliu
 Type:  task  |  Status:  assigned
 Priority:  major |   Milestone:  next-d
Component:  data-sharing  |  Resolution:
 Keywords:|  Blocked By:  546, 551, 557, 571
 Blocking:|
--+-

Comment (by meiliu):

 Yes, I was aware that #544 was not technically in the critical path. We
 put it in July because it coincided with other geocoding work.
 -- Mei

--
Ticket URL: 

gpc-informatics 
Greater Plains Network - Informatics
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Re: [gpc-informatics] #545: Study sample and DM sample definition for next-d

2017-05-04 Thread GPC Informatics

#545: Study sample and DM sample definition for next-d
--+-
 Reporter:  dconnolly |   Owner:  meiliu
 Type:  task  |  Status:  assigned
 Priority:  major |   Milestone:  next-d
Component:  data-sharing  |  Resolution:
 Keywords:|  Blocked By:  546, 551, 557, 571
 Blocking:|
--+-
Changes (by dconnolly):

 * blockedby:  546, 551, 571 => 546, 551, 557, 571


Comment:

 In yesterday's KUMC planning meeting, we estimated this will complete in
 October. The critical path looks like:

   - May: test data transfer protocol (#590)
   - Jun: finish lab LOINC codes, SQL (#551)
   - Jul: integrate updated geocoding data from UMN (#544)
   - Aug: finish all changes to SQL code (#546)
   - Aug, Sep, Oct: all sites prepare, submit study sample and DM sample
 definition

 Mei, the geocoding stuff (#544) isn't technically in [/depgraph/ticket/545
 the critical path for this part of the project]. I don't know if you were
 aware of that when we put this plan together. I wasn't.

--
Ticket URL: 

gpc-informatics 
Greater Plains Network - Informatics
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Re: [gpc-informatics] #444: Pregnancy Status for NEXT-D

RE: [gpc-informatics] #444: Pregnancy Status for NEXT-D

Re: [gpc-informatics] #444: Pregnancy Status for NEXT-D

Re: [gpc-informatics] #444: Pregnancy Status for NEXT-D

Re: [gpc-informatics] #444: Pregnancy Status for NEXT-D

RE: [gpc-informatics] #444: Pregnancy Status for NEXT-D

Re: [gpc-informatics] #444: Pregnancy Status for NEXT-D

RE: [gpc-informatics] #444: Pregnancy Status for NEXT-D

RE: [gpc-informatics] #444: Pregnancy Status for NEXT-D

Re: [gpc-informatics] #444: Pregnancy Status for NEXT-D

Re: [gpc-informatics] #545: Study sample and DM sample definition for next-d

Re: [gpc-informatics] #545: Study sample and DM sample definition for next-d

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