Re: [gmx-users] Out of Disk Space

[MUSYOKA THOMMAS]

Hi Pavan,
When you use the grompp command to prepare the md.tpr file for the final
mdrun, do you notice such a statement "This run will generate roughly X
Mb of data". I suspect the resultant trajectory could be exceeding the
available space.


On Tue, Mar 4, 2014 at 4:12 PM, Pavan Kumar wrote:

> Hi everybody,
> I am running mdrun_mpi V 4.6.5 for nsteps=1000; 20 ns
> My simulation is getting stopped at 500ps and I am getting following error
> even though i have enough space on my cluster around 17 GB.
>
> *Cannot fsync 'md1.trr'; maybe you are out of disk space?*
> *Cannot fsync 'md1.log'; maybe you are out of disk space?*
>
>
>  I have executed for two times, each time i get different error.
>
> What is the reason for the above error. I am sharing my mdp file.
> Any help is appreciated.
> --
> Thanks & Regards,
> Pavan Kumar
> Project Engineer
> CDAC -KP
> Ph +91-7676367646
>
> --
> Gromacs Users mailing list
>
> * Please search the archive at
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> posting!
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>
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Re: [gmx-users] Out of Disk Space

[Pavan Kumar]

Hello THOMMAS,

Exactly, it showed 2.2GB of trajectory is going to be created.
But i have 17GB of free space on my cluster on which i am running.
So any other reasons for the error.
Thanks in advance.


On Tue, Mar 4, 2014 at 8:00 PM, MUSYOKA THOMMAS <
mutemibiochemis...@gmail.com> wrote:

> Hi Pavan,
> When you use the grompp command to prepare the md.tpr file for the final
> mdrun, do you notice such a statement "This run will generate roughly X
> Mb of data". I suspect the resultant trajectory could be exceeding the
> available space.
>
>
> On Tue, Mar 4, 2014 at 4:12 PM, Pavan Kumar  >wrote:
>
> > Hi everybody,
> > I am running mdrun_mpi V 4.6.5 for nsteps=1000; 20 ns
> > My simulation is getting stopped at 500ps and I am getting following
> error
> > even though i have enough space on my cluster around 17 GB.
> >
> > *Cannot fsync 'md1.trr'; maybe you are out of disk space?*
> > *Cannot fsync 'md1.log'; maybe you are out of disk space?*
> >
> >
> >  I have executed for two times, each time i get different error.
> >
> > What is the reason for the above error. I am sharing my mdp file.
> > Any help is appreciated.
> > --
> > Thanks & Regards,
> > Pavan Kumar
> > Project Engineer
> > CDAC -KP
> > Ph +91-7676367646
> >
> > --
> > Gromacs Users mailing list
> >
> > * Please search the archive at
> > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> > posting!
> >
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> > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> > send a mail to gmx-users-requ...@gromacs.org.
> >
> >
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Pavan Kumar
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Re: [gmx-users] Out of Disk Space

[Christopher Neale]

It could be a quota issue (there is free space, but your group has used its 
entire allocation). Also, file systems often have limits not only on the total 
amount of space, but also on the total number of files that a group is allowed 
to create. Talk to your system administrator. There is likely a special command 
that you can run to find the relevant information (e.g., quota, diskUsage, 
prquota, etc... these are usually scripts written by your administrators so the 
name could in theory be anything).

Chris.

From: gromacs.org_gmx-users-boun...@maillist.sys.kth.se 
 on behalf of Pavan Kumar 

Sent: 04 March 2014 09:38
To: gmx-users
Subject: Re: [gmx-users] Out of Disk Space

Hello THOMMAS,

Exactly, it showed 2.2GB of trajectory is going to be created.
But i have 17GB of free space on my cluster on which i am running.
So any other reasons for the error.
Thanks in advance.


On Tue, Mar 4, 2014 at 8:00 PM, MUSYOKA THOMMAS <
mutemibiochemis...@gmail.com> wrote:

> Hi Pavan,
> When you use the grompp command to prepare the md.tpr file for the final
> mdrun, do you notice such a statement "This run will generate roughly X
> Mb of data". I suspect the resultant trajectory could be exceeding the
> available space.
>
>
> On Tue, Mar 4, 2014 at 4:12 PM, Pavan Kumar  >wrote:
>
> > Hi everybody,
> > I am running mdrun_mpi V 4.6.5 for nsteps=1000; 20 ns
> > My simulation is getting stopped at 500ps and I am getting following
> error
> > even though i have enough space on my cluster around 17 GB.
> >
> > *Cannot fsync 'md1.trr'; maybe you are out of disk space?*
> > *Cannot fsync 'md1.log'; maybe you are out of disk space?*
> >
> >
> >  I have executed for two times, each time i get different error.
> >
> > What is the reason for the above error. I am sharing my mdp file.
> > Any help is appreciated.
> > --
> > Thanks & Regards,
> > Pavan Kumar
> > Project Engineer
> > CDAC -KP
> > Ph +91-7676367646
> >
> > --
> > Gromacs Users mailing list
> >
> > * Please search the archive at
> > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> > posting!
> >
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> > send a mail to gmx-users-requ...@gromacs.org.
> >
> >
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Pavan Kumar
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Re: [gmx-users] Out of Disk Space

[Dr. Vitaly Chaban]

>> >  I have executed for two times, each time i get different error.
>> >

And you got *different* errors... What's the difference?

Did you get the error at exactly the same integration time-step?

Did you try to resproduce the error on another disk partition?


Dr. Vitaly V. Chaban
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Re: [gmx-users] Out of Disk Space

[vansh]

 i had a same type of problem when i was using gromacs 4.6.4 version ..
the problem was with 32 bit system..when i changed to 64 bit operating
system evrything went on fine.
 but in my case i was getting same error (disk space error) after 2.2 gb
file was generated although i had 800 gb free space.
hope it will help .

best

-
thanks in advance :)
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Re: [gmx-users] Out of disk space

[Mark Abraham]

On Tue, Jun 3, 2014 at 10:35 PM, Carlos Familia 
wrote:

> Hello,
>
> I was running the final equilibration step (NTP) and i received an error
> saying that i was running out of disk space, the trajectory file writen has
> 2GB, and every retry will generate a file with the same size. I have looked
> for file size limit, but there is no limitation that i can find on my
> system. I am runing arch linux on a 32bits computer (i686),


That is likely a limitation that is manifest in whatever library stack is
supporting the file writing that GROMACS is using. If (say) the C library
uses a 32-bit integer for the size, bang you're dead.


> the file system
> is ext4, have 2GB of ram, and 64GB of disk available.
>
> The command issued was:
>
> mdrun -v -deffnm npt
>
> The gromacs message was:
>
> Program mdrun, VERSION 4.6.5
> Source code file:
> .../aur-gromacs-mpi/src/gromacs-4.6.5/src/gmxlib/trnio.c, line: 311
>
> File input/output error:
> Cannot write trajectory frame; maybe you are out of disk space?
> For more information and tips for troubleshooting, please check the
> GROMACS
>
> I have also runned the comman ulimit -a, that showed:
>
> core file size  (blocks, -c) 0
> data seg size   (kbytes, -d) unlimited
> scheduling priority (-e) 30
> file size   (blocks, -f) unlimited
> pending signals (-i) 16117
> max locked memory   (kbytes, -l) unlimited
> max memory size (kbytes, -m) unlimited
> open files  (-n) 1024
> pipe size(512 bytes, -p) 8
> POSIX message queues (bytes, -q) 819200
> real-time priority  (-r) 99
> stack size  (kbytes, -s) 8192
> cpu time   (seconds, -t) unlimited
> max user processes  (-u) 16117
> virtual memory  (kbytes, -v) unlimited
> file locks  (-x) unlimited
>
> Additionally i run a program to write 2.5 GB to disk in c++, that generated
> the 2.5GB file without any problem:
>
> #include 
> #include 
> #include 
>
> int main()
> {
> std::vector empty(1024, 0);
> std::ofstream ofs("ouput.img", std::ios::binary | std::ios::out);
>
> for(int i = 0; i < 1024*2560; i++)
> {
> if (!ofs.write(&empty[0], empty.size()))
> {
> std::cerr << "problem writing to file" << std::endl;
> return 255;
> }
> }
> }
>
> Any ideas on how to solve this?
>

Use a 64-bit operating system ;-) This is a problem users of your operating
system have likely encountered before, so if there is (say) a C library
that is compiled in some kind of 64-bit work-around mode, you may be able
to use that. The C++ library seems like it may have such a back end.

I know that i can change the parameters in the mdp file in order to
> generate smaller files, but i was looking for a different solution that
> wouldn't require this.
> Is there any option to mdrun that could split the trajectory file for a
> specified size?
>

No.

Mark


>
> Thanks,
>
> Carlos Família
> --
> Carlos Familia, MSc , PharmD
> ISCSEM Pharmacology Assistant Lecturer
> ISCSEM Laboratory of Molecular Pathology Researcher
> Tel. +351 212946700 (Main) / +351 212946769 (Lab)
> e-mail: carlosfami...@gmail.com / carlosfami...@egasmoniz.edu.pt
> --
> Gromacs Users mailing list
>
> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> posting!
>
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>
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Re: [gmx-users] Out of disk space

[Mark Abraham]

Choosing appropriate output-frequency settings, nsteps to cap your file
size, and mdrun -noappend is likely your best approach.

Mark


On Wed, Jun 4, 2014 at 8:54 PM, Mark Abraham 
wrote:

>
>
>
> On Tue, Jun 3, 2014 at 10:35 PM, Carlos Familia 
> wrote:
>
>> Hello,
>>
>> I was running the final equilibration step (NTP) and i received an error
>> saying that i was running out of disk space, the trajectory file writen
>> has
>> 2GB, and every retry will generate a file with the same size. I have
>> looked
>> for file size limit, but there is no limitation that i can find on my
>> system. I am runing arch linux on a 32bits computer (i686),
>
>
> That is likely a limitation that is manifest in whatever library stack is
> supporting the file writing that GROMACS is using. If (say) the C library
> uses a 32-bit integer for the size, bang you're dead.
>
>
>> the file system
>> is ext4, have 2GB of ram, and 64GB of disk available.
>>
>> The command issued was:
>>
>> mdrun -v -deffnm npt
>>
>> The gromacs message was:
>>
>> Program mdrun, VERSION 4.6.5
>> Source code file:
>> .../aur-gromacs-mpi/src/gromacs-4.6.5/src/gmxlib/trnio.c, line: 311
>>
>> File input/output error:
>> Cannot write trajectory frame; maybe you are out of disk space?
>> For more information and tips for troubleshooting, please check the
>> GROMACS
>>
>> I have also runned the comman ulimit -a, that showed:
>>
>> core file size  (blocks, -c) 0
>> data seg size   (kbytes, -d) unlimited
>> scheduling priority (-e) 30
>> file size   (blocks, -f) unlimited
>> pending signals (-i) 16117
>> max locked memory   (kbytes, -l) unlimited
>> max memory size (kbytes, -m) unlimited
>> open files  (-n) 1024
>> pipe size(512 bytes, -p) 8
>> POSIX message queues (bytes, -q) 819200
>> real-time priority  (-r) 99
>> stack size  (kbytes, -s) 8192
>> cpu time   (seconds, -t) unlimited
>> max user processes  (-u) 16117
>> virtual memory  (kbytes, -v) unlimited
>> file locks  (-x) unlimited
>>
>> Additionally i run a program to write 2.5 GB to disk in c++, that
>> generated
>> the 2.5GB file without any problem:
>>
>> #include 
>> #include 
>> #include 
>>
>> int main()
>> {
>> std::vector empty(1024, 0);
>> std::ofstream ofs("ouput.img", std::ios::binary | std::ios::out);
>>
>> for(int i = 0; i < 1024*2560; i++)
>> {
>> if (!ofs.write(&empty[0], empty.size()))
>> {
>> std::cerr << "problem writing to file" << std::endl;
>> return 255;
>> }
>> }
>> }
>>
>> Any ideas on how to solve this?
>>
>
> Use a 64-bit operating system ;-) This is a problem users of your
> operating system have likely encountered before, so if there is (say) a C
> library that is compiled in some kind of 64-bit work-around mode, you may
> be able to use that. The C++ library seems like it may have such a back end.
>
> I know that i can change the parameters in the mdp file in order to
>> generate smaller files, but i was looking for a different solution that
>> wouldn't require this.
>> Is there any option to mdrun that could split the trajectory file for a
>> specified size?
>>
>
> No.
>
> Mark
>
>
>>
>> Thanks,
>>
>> Carlos Família
>> --
>> Carlos Familia, MSc , PharmD
>> ISCSEM Pharmacology Assistant Lecturer
>> ISCSEM Laboratory of Molecular Pathology Researcher
>> Tel. +351 212946700 (Main) / +351 212946769 (Lab)
>> e-mail: carlosfami...@gmail.com / carlosfami...@egasmoniz.edu.pt
>> --
>> Gromacs Users mailing list
>>
>> * Please search the archive at
>> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
>> posting!
>>
>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>>
>> * For (un)subscribe requests visit
>> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
>> send a mail to gmx-users-requ...@gromacs.org.
>>
>
>
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Re: [gmx-users] out of disk space error

[Chandan Choudhury]

Dear vaani,

Please check you have sufficient permission on the disk where you are
trying.

Try rerunning mdrun.

Chandan


--
Chandan kumar Choudhury
NCL, Pune
INDIA


On Wed, Dec 4, 2013 at 10:33 AM, vaani  wrote:

> hello all,
> i have been trying to simulate this 414 aa long protein for 10ns,using
> gromacs 4.6.4 version,  but at the time of mdrun i am getting this error :
> file input/output error:
> can not write trajectory frame ; may be you are out of disk space??
> reducing time of equilibration does not give this error ..i already have 1
> TB space and and approx. 870 GB is free ..i tried running as a root also
> but
> of no use ..
> any help ??
>
> regards
>
>
> -
> thanks in advance :)
> --
> View this message in context:
> http://gromacs.5086.x6.nabble.com/out-of-disk-space-error-tp5013021.html
> Sent from the GROMACS Users Forum mailing list archive at Nabble.com.
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Re: [gmx-users] out of disk space error

[vaani]

hi chandan..
output for  ls -1 is as follows:
the directory from where i am running simulatons is in desktop .. and i have
all the permissions for it. i am not that used to ubuntu and your suggestion
will be of great help ..

total 52
drwxrwxrwx 9 vansh vansh 4096 Nov 22 14:40 Desktop
drwxr-xr-x 2 vansh vansh 4096 Nov 26 15:13 Documents
drwxr-xr-x 8 vansh vansh 4096 Dec  3 16:43 Downloads
-rw-r--r-- 1 vansh vansh 8445 Nov 12 10:03 examples.desktop
-rw-rw-r-- 1 vansh vansh 5083 Dec  3 11:20 md.log
drwxr-xr-x 2 vansh vansh 4096 Nov 12 10:08 Music
drwxr-xr-x 2 vansh vansh 4096 Nov 13 22:49 Pictures
drwxr-xr-x 2 vansh vansh 4096 Nov 12 10:08 Public
drwxr-xr-x 2 vansh vansh 4096 Nov 12 10:08 Templates
drwxr-xr-x 2 vansh vansh 4096 Nov 12 10:08 Videos


-
thanks in advance :)
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Re: [gmx-users] out of disk space error

[Chandan Choudhury]

Dear vaani,

Please rerun the gmx executable.

Chandan


--
Chandan kumar Choudhury
NCL, Pune
INDIA


On Wed, Dec 4, 2013 at 11:20 AM, vaani  wrote:

> hi chandan..
> output for  ls -1 is as follows:
> the directory from where i am running simulatons is in desktop .. and i
> have
> all the permissions for it. i am not that used to ubuntu and your
> suggestion
> will be of great help ..
>
> total 52
> drwxrwxrwx 9 vansh vansh 4096 Nov 22 14:40 Desktop
> drwxr-xr-x 2 vansh vansh 4096 Nov 26 15:13 Documents
> drwxr-xr-x 8 vansh vansh 4096 Dec  3 16:43 Downloads
> -rw-r--r-- 1 vansh vansh 8445 Nov 12 10:03 examples.desktop
> -rw-rw-r-- 1 vansh vansh 5083 Dec  3 11:20 md.log
> drwxr-xr-x 2 vansh vansh 4096 Nov 12 10:08 Music
> drwxr-xr-x 2 vansh vansh 4096 Nov 13 22:49 Pictures
> drwxr-xr-x 2 vansh vansh 4096 Nov 12 10:08 Public
> drwxr-xr-x 2 vansh vansh 4096 Nov 12 10:08 Templates
> drwxr-xr-x 2 vansh vansh 4096 Nov 12 10:08 Videos
>
>
> -
> thanks in advance :)
> --
> View this message in context:
> http://gromacs.5086.x6.nabble.com/out-of-disk-space-error-tp5013021p5013023.html
> Sent from the GROMACS Users Forum mailing list archive at Nabble.com.
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Re: [gmx-users] out of disk space error

[vaani]

i am sorry ..but i kind of dint get you ..

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Re: [gmx-users] out of disk space error

[Chandan Choudhury]

Dear vaani,

Sorry for the unclear message. Try running the mdrun command once again and
post the out put of the log file.

Chandan

--
Chandan kumar Choudhury
NCL, Pune
INDIA


On Wed, Dec 4, 2013 at 12:34 PM, vaani  wrote:

> i am sorry ..but i kind of dint get you ..
>
> -
> thanks in advance :)
> --
> View this message in context:
> http://gromacs.5086.x6.nabble.com/out-of-disk-space-error-tp5013021p5013027.html
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Re: [gmx-users] out of disk space error

[vaani]

sure ..

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Re: [gmx-users] out of disk space error

[vaani]

nvt.log   






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Re: [gmx-users] out of disk space error

[vaani]

vaani wrote > nvt.log
  

find the attached nvt.log file ..
i have been equilibrating  for 200ps in this example..and getting this error
,
but when equilibrating for 100ps there is no such error ..in later case i am
getting this error at the time of 10 ns dynamic run 

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Re: [gmx-users] out of disk space error

[amin]

 

Hi. You can probably try to increase the values of nstxout, nstvout,
nstcalcenergy, nstenergy etc. to something like 2000 or 5000 and rerun.
100 seems very small. 

Amin. 

On 2013-12-04 12:58, vaani wrote: 

> nvt.log  
> 
> -
> thanks in advance :)
> --
> View this message in context: 
> http://gromacs.5086.x6.nabble.com/out-of-disk-space-error-tp5013021p5013030.html
>  [2]
> Sent from the GROMACS Users Forum mailing list archive at Nabble.com.

 

Links:
--
[1] http://gromacs.5086.x6.nabble.com/file/n5013030/nvt.log
[2]
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Re: [gmx-users] out of disk space error

[vaani]

hi ..
thanks for the reply..
but does  it has to do something with disk space error ??



amin wrote
> Hi. You can probably try to increase the values of nstxout, nstvout,
> nstcalcenergy, nstenergy etc. to something like 2000 or 5000 and rerun.
> 100 seems very small. 
> 
> Amin. 
> 
> On 2013-12-04 12:58, vaani wrote: 
> 
>> nvt.log > [1]> 
>> 
>> -
>> thanks in advance :)
>> --
>> View this message in context:
>> http://gromacs.5086.x6.nabble.com/out-of-disk-space-error-tp5013021p5013030.html
>> [2]
>> Sent from the GROMACS Users Forum mailing list archive at Nabble.com.
> 
>  
> 
> Links:
> --
> [1] http://gromacs.5086.x6.nabble.com/file/n5013030/nvt.log
> [2]
> http://gromacs.5086.x6.nabble.com/out-of-disk-space-error-tp5013021p5013030.html
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> gmx-users-request@

> .



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Re: [gmx-users] out of disk space error

[amin]

 

I think so. You are outputting the information too often i.e every 0.2
ps i.e. 5000 times per ns. See this thread 

http://comments.gmane.org/gmane.science.biology.gromacs.user/32721 

Amin. 

On 2013-12-04 15:11, vaani wrote: 

> hi ..
> thanks for the reply..
> but does it has to do something with disk space error ??
> 
> amin wrote
> Hi. You can probably try to increase the values of nstxout, nstvout, 
> nstcalcenergy, nstenergy etc. to something like 2000 or 5000 and rerun. 100 
> seems very small. Amin. On 2013-12-04 12:58, vaani wrote: nvt.log 
>  - 
> thanks in advance :) -- View this message in context: 
> http://gromacs.5086.x6.nabble.com/out-of-disk-space-error-tp5013021p5013030.html
>  [2] [2] Sent from the GROMACS Users Forum mailing list archive at 
> Nabble.com. Links: -- [1] 
> http://gromacs.5086.x6.nabble.com/file/n5013030/nvt.log [1] [2] 
> http://gromacs.5086.x6.nabble.com/out-of-disk-space-error-tp5013021p5013030.html
>  [2] -- Gromacs Users mailing list * Please search the archive at 
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 end a
mail to

> gmx-users-request@

> .

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[6]
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Re: [gmx-users] out of disk space error

[Justin Lemkul]

On 12/4/13 5:24 AM, a...@imtech.res.in wrote:



I think so. You are outputting the information too often i.e every 0.2
ps i.e. 5000 times per ns. See this thread

http://comments.gmane.org/gmane.science.biology.gromacs.user/32721



It is unlikely that a few hundred ps of NVT would fill up someone's disk if it 
has several hundred GB available, but it can't hurt to reduce the output a bit. 
 Frequent writing could be taxing the filesystem unnecessarily.


It is also important to keep in mind that some desktop computers simply cannot 
handle a simulation that would be best run on a cluster with high-performance I/O.


-Justin

--
==

Justin A. Lemkul, Ph.D.
Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalem...@outerbanks.umaryland.edu | (410) 706-7441

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Re: [gmx-users] out of disk space error

[vaani]

On 12/4/13 5:24 AM, amin@.res wrote:
>
>
> I think so. You are outputting the information too often i.e every 0.2
> ps i.e. 5000 times per ns. See this thread
>
> http://comments.gmane.org/gmane.science.biology.gromacs.user/32721
>

It is unlikely that a few hundred ps of NVT would fill up someone's disk if
it 
has several hundred GB available, but it can't hurt to reduce the output a
bit. 
  Frequent writing could be taxing the filesystem unnecessarily.

It is also important to keep in mind that some desktop computers simply
cannot 
handle a simulation that would be best run on a cluster with
high-performance I/O.

-Justin

-- 
==

Justin A. Lemkul, Ph.D.
Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

hi justin,
i have already run simulations on this work station before also without any
such disk space problem. i am facing this problem now only after installing
ubuntu and gromacs freshly, 

best




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Re: [gmx-users] out of disk space error

[bipin singh]

If none of the earlier suggestions worked then, it could be a simple
problem of power port from which you have connected your hard disk. Try
reconnecting the hard disk and and retry running the mdrun.

Posting the exact commands used while writing the output during mdrun, may
help to trace the problem.


On Thu, Dec 5, 2013 at 11:03 AM, vaani  wrote:

>
> On 12/4/13 5:24 AM, amin@.res wrote:
> >
> >
> > I think so. You are outputting the information too often i.e every 0.2
> > ps i.e. 5000 times per ns. See this thread
> >
> > http://comments.gmane.org/gmane.science.biology.gromacs.user/32721
> >
>
> It is unlikely that a few hundred ps of NVT would fill up someone's disk if
> it
> has several hundred GB available, but it can't hurt to reduce the output a
> bit.
>   Frequent writing could be taxing the filesystem unnecessarily.
>
> It is also important to keep in mind that some desktop computers simply
> cannot
> handle a simulation that would be best run on a cluster with
> high-performance I/O.
>
> -Justin
>
> --
> ==
>
> Justin A. Lemkul, Ph.D.
> Postdoctoral Fellow
>
> Department of Pharmaceutical Sciences
> School of Pharmacy
> Health Sciences Facility II, Room 601
> University of Maryland, Baltimore
> 20 Penn St.
> Baltimore, MD 21201
>
> hi justin,
> i have already run simulations on this work station before also without any
> such disk space problem. i am facing this problem now only after installing
> ubuntu and gromacs freshly,
>
> best
>
>
>
>
> -
> thanks in advance :)
> --
> View this message in context:
> http://gromacs.5086.x6.nabble.com/out-of-disk-space-error-tp5013021p5013086.html
> Sent from the GROMACS Users Forum mailing list archive at Nabble.com.
> --
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>



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