[HCP-Users] Forbidden to download

[Rosalia Dacosta Aguayo]

Dear HCP users,

I registered to the HCP web. I installed what was needed following the pdf
documentation. I also have firefox as my browser but when I tried to
download the tutprial dataset it says me "forbidden"

Any idea why this is happening and how to solve it?

Yours sincerely,
Rosalia

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Re: [HCP-Users] Detailed cortical areal map published in Nature and shared in BALSA

[Rosalia Dacosta Aguayo]

Dear Matt Glasser, Dr. Vann Essen and HCP users,

Is it possible to use this new parcelation as template for better
parcelating and understanding our brain?

I would be more than grateful if I could downloadidDoes it works with
FSL or we need FreeSurfer to use it?

Thanks in advance and Congratulations to both of you for this great job and
this great advance in the science

Rosalia

2016-07-20 22:09 GMT+02:00 Elam, Jennifer :

> *News from the Human Connectome Project (HCP)*
>
>
> *July 20, 2016 *
>
> *Detailed cortical areal map published in Nature and shared in BALSA*
> Major results by HCP investigators using HCP data and methods were
> published in Nature today.
>
> The study, A multi-modal parcellation of human cerebral cortex
> ,
> led by Matthew Glasser and David Van Essen of Washington University, used
> information derived from structural and functional MRI data collected on
> 210 HCP subjects to create a new 180 region per hemisphere map of the
> cerebral cortex of the human brain, including 97 new areas not previously
> reported using other approaches. The new cortical map is being referred to
> as HCP Multimodal parcellation, version 1 (HCP_MMP1.0), as updated
> versions are expected as more detailed data becomes available in future.
>
> The multimodal surface matching algorithm pioneered by HCP investigators
> at Oxford U was key in precisely aligning the individual brains before
> analysis. The maps were then applied to individuals from an independent set
> of 210 HCP subjects using a machine-learning classifier to recognize the
> multi-modal ‘fingerprint’ of each cortical area.
>
> The parcellation and Connectome Workbench
> 
> scenes for each of the main article and supplemental figures are being
> shared  in the new Brain
> Analysis Library of Spatial maps and Atlases (BALSA) database
>  being developed by the Van Essen lab at
> Washington University.
>
> The parcellation for use as a reference is most easily accessed in the 
> Glasser_et_al_2016_HCP_MMP1.0_5_StudyDataset.scene
> study dataset.
>
> Nature produced a video highlighting the work in the context of previous
> brain mapping efforts:https://youtu.be/UHDfvfYCY0U
> 
> The ultimate brain map 
> youtu.be
> A new map of the human brain could be the most accurate yet, as it
> combines all sorts of different kinds of data. This might finally solve a
> century of disag...
> In addition to the article itself, Nature is distributing a wealth of
> supplemental information, as David Van Essen told the Washington University
> Record:
>
> “We were able to persuade Nature to put online almost 200 extra pages of
> detailed information on each of the 180 regions as well as all of the
> algorithms we used to align the brains and create the map,” Van Essen said.
> “We think it will serve the scientific community best if they can dive down
> and get these maps onto their computer screens and explore as they see fit.”
>
> We encourage you to check out the article and all the resources available
> to explore.
>
> Best,
> The Van Essen lab and WU-Minn-Ox HCP Consortium
>
>
> Jennifer Elam, Ph.D.
> Scientific Outreach, Human Connectome Project
> Washington University School of Medicine
> Department of Neuroscience, Box 8108
> 660 South Euclid Avenue
> St. Louis, MO 63110
> 314-362-9387
> e...@wustl.edu
> www.humanconnectome.org
>
> ___
> HCP-Users mailing list
> HCP-Users@humanconnectome.org
> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>

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[HCP-Users] How to make a folder shared between Windows and VM by Timothty .B Brown

[Rosalia Dacosta Aguayo]

Hi Rosalia,

How to create a folder that is shared between the host and guest (VM) would
depend on what tool you are using to run your VM in the first place.

If you are using VMware (Player or Workstation) I would suggest you have a
look at the document *VMware Workstation 5.0 Using Shared Folders *at
https://www.vmware.com/support/ws5/doc/ws_running_shared_folders.html
This is written for VMware Workstation 5.0, but it seems to be valid for
VMware Player and later versions of VMware Workstation.

If you are using Oracle VirtualBox, I would suggest you have a look at the
document *VirtualBox Shared Folders *at
http://virtuatopia.com/index.php/VirtualBox_Shared_Folders.

If you are using some other program to run your VM, you'll need to check
the documentation or do a web search for documentation that will guide you.

Please reply to the HCP-Users list so that others who have the same
question can also benefit.

Best Regards,

Tim

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[HCP-Users] Having problems with installing aspera, upgrade chromium, download data for doing tutorials with workbench....

[Rosalia Dacosta Aguayo]

Dear Caret and Workbench team,

I have registered to workbench and I I had downloaded workbench for linux
64bitsok...no problem with this...and with the tutorial...the problem
is when trying to download your images in order to do the tutorials.

The problem is with downloading the data it aks me for intaslling aspera
and other pluginwith the other I tell that yes, but it tells me that is
not supported and with aspera tells me something similar. I am working in a
Virtual Maxine, with UBUNTU 14.04 and Neurodebian installedany
suggestion to cope with this problem? I have tried to update chromium in
the neurodebian package but it has been impossible...I have directly gone
to the aspera web page and I have downloaded it...a file.sh...but I try to
execute it and nothing seems to work... (I have aspera in my Destktop...).
I have wrote in my shell: sudo apt-get install (and all the name of aspera:
aspera-connect-3.6.1.110647-linux-64.sh but nothing works wellI have to
install plugins for chromium and I don't find how to do it, although I have
been looking for in internet...it seems that I have to change some options
in my chromium but those options does not appear...


The other question is that  you say that you no longer actively develop
Caret, but I need to do a tutorial with the last version and download the
images necessary for doing thisany suggestion with this would be highly
appreciate? I would lilke to do tutorials with caret as well as
workbench...

Yours sincerely,

Rosalia.

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