[HCP-Users] sphere surface file for meg
Hello. Quick question regarding MEG data: Where can I find, or how can I construct, a spherical mapping (*.sphere...*) surface vertex file corresponding to the MEG surface files *XX/MEG/anatomy/XX.L.midthickness.4k_fs_LR.surf.gii* As far as I can tell, these seem to be different sizes to all other *.sphere...* files in the *T1w* and *MNINonLinear *folders. ? Ta, john -- Dr. John Griffiths Post-Doctoral Research Fellow Rotman Research Institute, Baycrest Toronto, Canada and Honorary Associate School of Physics University of Sydney ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
Re: [HCP-Users] sphere surface file for meg
Is there not a file being distributed of a name like this: XX/MEG/anatomy/XX.L.sphere.4k_fs_LR.surf.gii Peace, Matt. From: mailto:hcp-users-boun...@humanconnectome.org>> on behalf of John Griffiths mailto:j.davidgriffi...@gmail.com>> Date: Saturday, July 30, 2016 at 11:51 AM To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" mailto:hcp-users@humanconnectome.org>> Subject: [HCP-Users] sphere surface file for meg Hello. Quick question regarding MEG data: Where can I find, or how can I construct, a spherical mapping (.sphere...) surface vertex file corresponding to the MEG surface files XX/MEG/anatomy/XX.L.midthickness.4k_fs_LR.surf.gii As far as I can tell, these seem to be different sizes to all other .sphere... files in the T1w and MNINonLinear folders. ? Ta, john -- Dr. John Griffiths Post-Doctoral Research Fellow Rotman Research Institute, Baycrest Toronto, Canada and Honorary Associate School of Physics University of Sydney ___ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
Re: [HCP-Users] sphere surface file for meg
Not in the s3 bucket; s3cmd ls s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/ DIR s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/figures/ DIR s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/provenance/ 2016-02-08 19:49 96267 s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307.L.inflated.4k_fs_LR.surf.gii 2016-02-08 19:49 96321 s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307.L.midthickness.4k_fs_LR.surf.gii 2016-02-08 19:49 93554 s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307.R.inflated.4k_fs_LR.surf.gii 2016-02-08 19:49 93616 s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307.R.midthickness.4k_fs_LR.surf.gii 2016-02-08 19:49160318 s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307_MEG_anatomy_headmodel.mat 2016-02-08 19:49235674 s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307_MEG_anatomy_sourcemodel_2d.mat 2016-02-08 19:49 1921179 s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307_MEG_anatomy_sourcemodel_3d4mm.mat 2016-02-08 19:49683239 s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307_MEG_anatomy_sourcemodel_3d6mm.mat 2016-02-08 19:49357067 s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307_MEG_anatomy_sourcemodel_3d8mm.mat 2016-02-08 19:49 1524 s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307_MEG_anatomy_transform.txt 2016-02-08 19:49 70573682 s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/T1w_acpc_dc_restore.nii.gz On 30 July 2016 at 15:32, Glasser, Matthew wrote: > Is there not a file being distributed of a name like this: > > *XX/MEG/anatomy/XX.L.sphere.4k_fs_LR.surf.gii* > > Peace, > > Matt. > > From: on behalf of John Griffiths > > Date: Saturday, July 30, 2016 at 11:51 AM > To: "hcp-users@humanconnectome.org" > Subject: [HCP-Users] sphere surface file for meg > > > Hello. > > Quick question regarding MEG data: > > Where can I find, or how can I construct, a spherical mapping ( > *.sphere...*) surface vertex file corresponding to the MEG surface files > > *XX/MEG/anatomy/XX.L.midthickness.4k_fs_LR.surf.gii* > > As far as I can tell, these seem to be different sizes to all other > *.sphere...* files in the *T1w* and *MNINonLinear *folders. > > > ? > > > Ta, > > john > > > > > -- > > Dr. John Griffiths > > Post-Doctoral Research Fellow > > Rotman Research Institute, Baycrest > > Toronto, Canada > > and > > Honorary Associate > > School of Physics > > University of Sydney > > ___ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > -- > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > -- Dr. John Griffiths Post-Doctoral Research Fellow Rotman Research Institute, Baycrest Toronto, Canada and Honorary Associate School of Physics University of Sydney ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
Re: [HCP-Users] sphere surface file for meg
Hi again, I thought you were asking more about the process rather the actual sphere durface files. These files are inside the MEG pipeline code distributed in connectomedb in https://www.humanconnectome.org/documentation/HCP-pipelines/meg-pipeline.html If you download from "Pipeline Files" version v3.0 and unzip you ll find the files in megconnectome-3.0/template/ named "Sphere.4k.L.surf.gii" "Sphere.4k.R.surf.gii" Best G On 7/31/2016 2:12 AM, John Griffiths wrote: Not in the s3 bucket; s3cmd ls s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/ DIR s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/figures/ DIR s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/provenance/ 2016-02-08 19:49 96267 s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307.L.inflated.4k_fs_LR.surf.gii 2016-02-08 19:49 96321 s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307.L.midthickness.4k_fs_LR.surf.gii 2016-02-08 19:49 93554 s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307.R.inflated.4k_fs_LR.surf.gii 2016-02-08 19:49 93616 s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307.R.midthickness.4k_fs_LR.surf.gii 2016-02-08 19:49160318 s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307_MEG_anatomy_headmodel.mat 2016-02-08 19:49235674 s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307_MEG_anatomy_sourcemodel_2d.mat 2016-02-08 19:49 1921179 s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307_MEG_anatomy_sourcemodel_3d4mm.mat 2016-02-08 19:49683239 s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307_MEG_anatomy_sourcemodel_3d6mm.mat 2016-02-08 19:49357067 s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307_MEG_anatomy_sourcemodel_3d8mm.mat 2016-02-08 19:49 1524 s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307_MEG_anatomy_transform.txt 2016-02-08 19:49 70573682 s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/T1w_acpc_dc_restore.nii.gz On 30 July 2016 at 15:32, Glasser, Matthew <mailto:glass...@wustl.edu>> wrote: Is there not a file being distributed of a name like this: /XX/MEG/anatomy/XX.L.sphere.4k_fs_LR.surf.gii/ Peace, Matt. From: mailto:hcp-users-boun...@humanconnectome.org>> on behalf of John Griffiths mailto:j.davidgriffi...@gmail.com>> Date: Saturday, July 30, 2016 at 11:51 AM To: "hcp-users@humanconnectome.org <mailto:hcp-users@humanconnectome.org>" mailto:hcp-users@humanconnectome.org>> Subject: [HCP-Users] sphere surface file for meg Hello. Quick question regarding MEG data: Where can I find, or how can I construct, a spherical mapping (/.sphere.../) surface vertex file corresponding to the MEG surface files /XX/MEG/anatomy/XX.L.midthickness.4k_fs_LR.surf.gii/ As far as I can tell, these seem to be different sizes to all other /.sphere.../ files in the /T1w/ and /MNINonLinear /folders. ? Ta, john -- Dr. John Griffiths Post-Doctoral Research Fellow Rotman Research Institute, Baycrest Toronto, Canada and Honorary Associate School of Physics University of Sydney ___ HCP-Users mailing list HCP-Users@humanconnectome.org <mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. -- Dr. John Griffiths Post-Doctoral Research Fellow Rotman Research Institute, Baycrest Toronto, Canada and Honorary Associate School of Physics University of Sydney ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users