Re: [HCP-Users] sphere surface file for meg

2016-07-30 Thread Glasser, Matthew 
Is there not a file being distributed of a name like this:

XX/MEG/anatomy/XX.L.sphere.4k_fs_LR.surf.gii

Peace,

Matt.

From: 
mailto:hcp-users-boun...@humanconnectome.org>>
 on behalf of John Griffiths 
mailto:j.davidgriffi...@gmail.com>>
Date: Saturday, July 30, 2016 at 11:51 AM
To: "hcp-users@humanconnectome.org" 
mailto:hcp-users@humanconnectome.org>>
Subject: [HCP-Users] sphere surface file for meg


Hello.

Quick question regarding MEG data:

Where can I find, or how can I construct, a spherical mapping (.sphere...) 
surface vertex file corresponding to the MEG surface files

XX/MEG/anatomy/XX.L.midthickness.4k_fs_LR.surf.gii

As far as I can tell, these seem to be different sizes to all other .sphere... 
files in the T1w and MNINonLinear folders.


?


Ta,

john




--

Dr. John Griffiths

Post-Doctoral Research Fellow

Rotman Research Institute, Baycrest

Toronto, Canada

and

Honorary Associate

School of Physics

University of Sydney

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Re: [HCP-Users] sphere surface file for meg

2016-07-30 Thread John Griffiths 
Not in the s3 bucket;

s3cmd ls s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/

   DIR
s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/figures/
   DIR
s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/provenance/
2016-02-08 19:49 96267
s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307.L.inflated.4k_fs_LR.surf.gii
2016-02-08 19:49 96321
s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307.L.midthickness.4k_fs_LR.surf.gii
2016-02-08 19:49 93554
s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307.R.inflated.4k_fs_LR.surf.gii
2016-02-08 19:49 93616
s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307.R.midthickness.4k_fs_LR.surf.gii
2016-02-08 19:49160318
s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307_MEG_anatomy_headmodel.mat
2016-02-08 19:49235674
s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307_MEG_anatomy_sourcemodel_2d.mat
2016-02-08 19:49   1921179
s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307_MEG_anatomy_sourcemodel_3d4mm.mat
2016-02-08 19:49683239
s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307_MEG_anatomy_sourcemodel_3d6mm.mat
2016-02-08 19:49357067
s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307_MEG_anatomy_sourcemodel_3d8mm.mat
2016-02-08 19:49  1524
s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307_MEG_anatomy_transform.txt
2016-02-08 19:49  70573682
s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/T1w_acpc_dc_restore.nii.gz


On 30 July 2016 at 15:32, Glasser, Matthew  wrote:

> Is there not a file being distributed of a name like this:
>
> *XX/MEG/anatomy/XX.L.sphere.4k_fs_LR.surf.gii*
>
> Peace,
>
> Matt.
>
> From:  on behalf of John Griffiths
> 
> Date: Saturday, July 30, 2016 at 11:51 AM
> To: "hcp-users@humanconnectome.org" 
> Subject: [HCP-Users] sphere surface file for meg
>
>
> Hello.
>
> Quick question regarding MEG data:
>
> Where can I find, or how can I construct, a spherical mapping (
> *.sphere...*) surface vertex file corresponding to the MEG surface files
>
> *XX/MEG/anatomy/XX.L.midthickness.4k_fs_LR.surf.gii*
>
> As far as I can tell, these seem to be different sizes to all other
> *.sphere...* files in the *T1w* and *MNINonLinear *folders.
>
>
> ?
>
>
> Ta,
>
> john
>
>
>
>
> --
>
> Dr. John Griffiths
>
> Post-Doctoral Research Fellow
>
> Rotman Research Institute, Baycrest
>
> Toronto, Canada
>
> and
>
> Honorary Associate
>
> School of Physics
>
> University of Sydney
>
> ___
> HCP-Users mailing list
> HCP-Users@humanconnectome.org
> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>
>
> --
>
> The materials in this message are private and may contain Protected
> Healthcare Information or other information of a sensitive nature. If you
> are not the intended recipient, be advised that any unauthorized use,
> disclosure, copying or the taking of any action in reliance on the contents
> of this information is strictly prohibited. If you have received this email
> in error, please immediately notify the sender via telephone or return mail.
>



-- 

Dr. John Griffiths

Post-Doctoral Research Fellow

Rotman Research Institute, Baycrest

Toronto, Canada

and

Honorary Associate

School of Physics

University of Sydney

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HCP-Users mailing list
HCP-Users@humanconnectome.org
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Re: [HCP-Users] sphere surface file for meg

2016-07-31 Thread Georgios Michalareas 

Hi again,

I thought you were asking more about the process rather the actual 
sphere durface files.


These files are inside the MEG pipeline code distributed in connectomedb in

https://www.humanconnectome.org/documentation/HCP-pipelines/meg-pipeline.html 



If you download from  "Pipeline Files" version v3.0 and unzip

you ll find the files in
megconnectome-3.0/template/
named
"Sphere.4k.L.surf.gii"
"Sphere.4k.R.surf.gii"

Best
G

On 7/31/2016 2:12 AM, John Griffiths wrote:


Not in the s3 bucket;

s3cmd ls s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/

   DIR 
s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/figures/
   DIR 
s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/provenance/
2016-02-08 19:49 96267 
s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307.L.inflated.4k_fs_LR.surf.gii
2016-02-08 19:49 96321 
s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307.L.midthickness.4k_fs_LR.surf.gii
2016-02-08 19:49 93554 
s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307.R.inflated.4k_fs_LR.surf.gii
2016-02-08 19:49 93616 
s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307.R.midthickness.4k_fs_LR.surf.gii
2016-02-08 19:49160318 
s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307_MEG_anatomy_headmodel.mat
2016-02-08 19:49235674 
s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307_MEG_anatomy_sourcemodel_2d.mat
2016-02-08 19:49   1921179 
s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307_MEG_anatomy_sourcemodel_3d4mm.mat
2016-02-08 19:49683239 
s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307_MEG_anatomy_sourcemodel_3d6mm.mat
2016-02-08 19:49357067 
s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307_MEG_anatomy_sourcemodel_3d8mm.mat
2016-02-08 19:49  1524 
s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/100307_MEG_anatomy_transform.txt
2016-02-08 19:49  70573682 
s3://hcp-openaccess/HCP_900/100307/MEG/anatomy/T1w_acpc_dc_restore.nii.gz



On 30 July 2016 at 15:32, Glasser, Matthew > wrote:


Is there not a file being distributed of a name like this:

/XX/MEG/anatomy/XX.L.sphere.4k_fs_LR.surf.gii/

Peace,

Matt.

From: mailto:hcp-users-boun...@humanconnectome.org>> on behalf of John
Griffiths mailto:j.davidgriffi...@gmail.com>>
Date: Saturday, July 30, 2016 at 11:51 AM
To: "hcp-users@humanconnectome.org
"
mailto:hcp-users@humanconnectome.org>>
Subject: [HCP-Users] sphere surface file for meg


Hello.

Quick question regarding MEG data:

Where can I find, or how can I construct, a spherical mapping
(/.sphere.../) surface vertex file corresponding to the MEG
surface files

/XX/MEG/anatomy/XX.L.midthickness.4k_fs_LR.surf.gii/

As far as I can tell, these seem to be different sizes to all
other /.sphere.../ files in the /T1w/ and /MNINonLinear /folders.


?


Ta,

john




-- 


Dr. John Griffiths

Post-Doctoral Research Fellow

Rotman Research Institute, Baycrest

Toronto, Canada

and

Honorary Associate

School of Physics

University of Sydney

___
HCP-Users mailing list
HCP-Users@humanconnectome.org 
http://lists.humanconnectome.org/mailman/listinfo/hcp-users



The materials in this message are private and may contain
Protected Healthcare Information or other information of a
sensitive nature. If you are not the intended recipient, be
advised that any unauthorized use, disclosure, copying or the
taking of any action in reliance on the contents of this
information is strictly prohibited. If you have received this
email in error, please immediately notify the sender via telephone
or return mail.




--

Dr. John Griffiths

Post-Doctoral Research Fellow

Rotman Research Institute, Baycrest

Toronto, Canada

and

Honorary Associate

School of Physics

University of Sydney

___
HCP-Users mailing list
HCP-Users@humanconnectome.org
http://lists.humanconnectome.org/mailman/listinfo/hcp-users




___
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