[Jmol-users] can you visualize more than one molecular orbital at a time?
I know you can show a single MO (from a gamess log file), but is there a way to visualize 2 of them simultaneously? For example if I wanted to show the 2 pi bonds in ethyne - for sophomore organic students it is helpful to show them both at the same time Not sure it's possible, but I figured I would ask. -- Master Visual Studio, SharePoint, SQL, ASP.NET, C# 2012, HTML5, CSS, MVC, Windows 8 Apps, JavaScript and much more. Keep your skills current with LearnDevNow - 3,200 step-by-step video tutorials by Microsoft MVPs and experts. ON SALE this month only -- learn more at: http://p.sf.net/sfu/learnnow-d2d___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
[Jmol-users] how do you align center?
I can embed a jsmol, using the script nomenclature, but I can't seem to align the embed to the center. I have tried using allign center and div classes, but nothing. any suggestions? Thanks, Jonathan -- Master Visual Studio, SharePoint, SQL, ASP.NET, C# 2012, HTML5, CSS, MVC, Windows 8 Apps, JavaScript and much more. Keep your skills current with LearnDevNow - 3,200 step-by-step video tutorials by Microsoft MVPs and experts. ON SALE this month only -- learn more at: http://p.sf.net/sfu/learnnow-d2d___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] help - Question about JSmol
At the moment, I am using the St. Olaf packages to trouble shoot the issues. If I can't load a simple page that utilizes your code - then in my mind there is an issue with the server I am using to host the single page, yes? I have edited the test page again, simplified the header (I think) and removed the full path to j2s. Now it's broken again. I know it's not the header, as when I changed that, it still functioned the same. therefore there is some issue with the j2s statement. http://myweb.brooklyn.liu.edu/jgough/ChemResources/example3.htm On Fri, Jan 25, 2013 at 10:28 AM, Jonathan Gough wrote: > Bob, > > I'm still having a hard time figuring this out. > > 1 - I believe that the following page is picking up everything from you > page, and the right click menu isn't working. Would the problem be with > out server or am I still missing something? > http://myweb.brooklyn.liu.edu/jgough/ChemResources/example3.htm > > 2- RE: corrupted files. What I did previously was, download (via chrome) > unzip (via my mac's default application) the jsmol folder was moved to the > website directory (in a dropbox folder elsewhere on my mac) and then > uploaded to the server via the ftp protocol built into dreamweaver 5.5. > That failed so I tried this - used wget to download the file on a linux > box (centOS 5). used bash unzip, scp to the website directory on my mac, > then ftp via dreamweaver. That also failed (and is what is up now). > > In theory I could ftp straight from the linux box, but I can't figure out > exactly how to do that. Can you advise on how I might proceed? > > Thanks, > Jonathan > > > > On Wed, Jan 23, 2013 at 5:09 PM, Jonathan Gough < > jonathan.d.go...@gmail.com> wrote: > >> Thanks for getting back to me Bob, >> >> I am using a mac, but I didn't edit those files. In fact, I >> re-downloaded everything and the problem is the same. I even used wget >> from a linux box to grab the files from your machine and they are >> identical. if you go to >> http://myweb.brooklyn.liu.edu/jgough/jsmol/JSmolCore.js and view page >> source, there isn't any gaps. I used vi, and couldn't see any gaps either. >> >> if for some reason they are there, how would I go about getting rid of >> them? any other ideas? >> >> thanks, >> Jonathan >> >> >> On Wed, Jan 23, 2013 at 1:02 PM, Jonathan Gough < >> jonathan.d.go...@gmail.com> wrote: >> >>> Firstly I would like to thank everyone for their hard work on JSmol and >>> Jmol; Incredible, I love it! >>> >>> I am working on a website to help students here at LIU who are taking >>> organic chemistry. >>> >>> I believe I have figured out how to implement JSmol. In my testing >>> however, I have only been able to get JSmol.min.js to work. >>> For whatever reason, the other, or full packages (JSmoljQuery.js, >>> JSmolCore.js, JSmolApplet.js, JSmolApi.js, JSmolThree.js, JSmolGLmol.js, >>> j2s/j2sjmol.js, JSmol.js) do not want to work; pointing at your site >>> doesn't help, neither does switching browsers. In my hands the Jsmol.htm >>> page works, but test2.htm does not. >>> >>> the test pages on my site are here >>> >>> this works: >>> http://myweb.brooklyn.liu.edu/jgough/jsmol/jsmol.htm >>> >>> this doesn't: >>> http://myweb.brooklyn.liu.edu/jgough/jsmol/test2.htm >>> >>> simple-example that works: >>> http://myweb.brooklyn.liu.edu/jgough/ChemResources/example1.htm >>> >>> simple-example that doesn't work (missing the JSmol.min.js): >>> http://myweb.brooklyn.liu.edu/jgough/ChemResources/example2.htm >>> >>> >>> I was wondering if anyone could provide some insight. >>> >>> Sincerely, >>> Jonathan >>> >> >> > -- Master Visual Studio, SharePoint, SQL, ASP.NET, C# 2012, HTML5, CSS, MVC, Windows 8 Apps, JavaScript and much more. Keep your skills current with LearnDevNow - 3,200 step-by-step video tutorials by Microsoft MVPs and experts. ON SALE this month only -- learn more at: http://p.sf.net/sfu/learnnow-d2d___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] help - Question about JSmol
Bob, I'm still having a hard time figuring this out. 1 - I believe that the following page is picking up everything from you page, and the right click menu isn't working. Would the problem be with out server or am I still missing something? http://myweb.brooklyn.liu.edu/jgough/ChemResources/example3.htm 2- RE: corrupted files. What I did previously was, download (via chrome) unzip (via my mac's default application) the jsmol folder was moved to the website directory (in a dropbox folder elsewhere on my mac) and then uploaded to the server via the ftp protocol built into dreamweaver 5.5. That failed so I tried this - used wget to download the file on a linux box (centOS 5). used bash unzip, scp to the website directory on my mac, then ftp via dreamweaver. That also failed (and is what is up now). In theory I could ftp straight from the linux box, but I can't figure out exactly how to do that. Can you advise on how I might proceed? Thanks, Jonathan On Wed, Jan 23, 2013 at 5:09 PM, Jonathan Gough wrote: > Thanks for getting back to me Bob, > > I am using a mac, but I didn't edit those files. In fact, I > re-downloaded everything and the problem is the same. I even used wget > from a linux box to grab the files from your machine and they are > identical. if you go to > http://myweb.brooklyn.liu.edu/jgough/jsmol/JSmolCore.js and view page > source, there isn't any gaps. I used vi, and couldn't see any gaps either. > > if for some reason they are there, how would I go about getting rid of > them? any other ideas? > > thanks, > Jonathan > > > On Wed, Jan 23, 2013 at 1:02 PM, Jonathan Gough < > jonathan.d.go...@gmail.com> wrote: > >> Firstly I would like to thank everyone for their hard work on JSmol and >> Jmol; Incredible, I love it! >> >> I am working on a website to help students here at LIU who are taking >> organic chemistry. >> >> I believe I have figured out how to implement JSmol. In my testing >> however, I have only been able to get JSmol.min.js to work. >> For whatever reason, the other, or full packages (JSmoljQuery.js, >> JSmolCore.js, JSmolApplet.js, JSmolApi.js, JSmolThree.js, JSmolGLmol.js, >> j2s/j2sjmol.js, JSmol.js) do not want to work; pointing at your site >> doesn't help, neither does switching browsers. In my hands the Jsmol.htm >> page works, but test2.htm does not. >> >> the test pages on my site are here >> >> this works: >> http://myweb.brooklyn.liu.edu/jgough/jsmol/jsmol.htm >> >> this doesn't: >> http://myweb.brooklyn.liu.edu/jgough/jsmol/test2.htm >> >> simple-example that works: >> http://myweb.brooklyn.liu.edu/jgough/ChemResources/example1.htm >> >> simple-example that doesn't work (missing the JSmol.min.js): >> http://myweb.brooklyn.liu.edu/jgough/ChemResources/example2.htm >> >> >> I was wondering if anyone could provide some insight. >> >> Sincerely, >> Jonathan >> > > -- Master Visual Studio, SharePoint, SQL, ASP.NET, C# 2012, HTML5, CSS, MVC, Windows 8 Apps, JavaScript and much more. Keep your skills current with LearnDevNow - 3,200 step-by-step video tutorials by Microsoft MVPs and experts. ON SALE this month only -- learn more at: http://p.sf.net/sfu/learnnow-d2d___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
[Jmol-users] What do you need so the left click-menu pops up?
I can't seem to figure out what needs to be present in your code such that the menu of options pops up when you right click on a window in jsmol? Thanks jonathan -- Master Visual Studio, SharePoint, SQL, ASP.NET, C# 2012, HTML5, CSS, MVC, Windows 8 Apps, JavaScript and much more. Keep your skills current with LearnDevNow - 3,200 step-by-step video tutorials by Microsoft MVPs and experts. ON SALE this month only -- learn more at: http://p.sf.net/sfu/learnnow-d2d___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] help - Question about JSmol
Thanks for getting back to me Bob, I am using a mac, but I didn't edit those files. In fact, I re-downloaded everything and the problem is the same. I even used wget from a linux box to grab the files from your machine and they are identical. if you go to http://myweb.brooklyn.liu.edu/jgough/jsmol/JSmolCore.js and view page source, there isn't any gaps. I used vi, and couldn't see any gaps either. if for some reason they are there, how would I go about getting rid of them? any other ideas? thanks, Jonathan On Wed, Jan 23, 2013 at 1:02 PM, Jonathan Gough wrote: > Firstly I would like to thank everyone for their hard work on JSmol and > Jmol; Incredible, I love it! > > I am working on a website to help students here at LIU who are taking > organic chemistry. > > I believe I have figured out how to implement JSmol. In my testing > however, I have only been able to get JSmol.min.js to work. > For whatever reason, the other, or full packages (JSmoljQuery.js, > JSmolCore.js, JSmolApplet.js, JSmolApi.js, JSmolThree.js, JSmolGLmol.js, > j2s/j2sjmol.js, JSmol.js) do not want to work; pointing at your site > doesn't help, neither does switching browsers. In my hands the Jsmol.htm > page works, but test2.htm does not. > > the test pages on my site are here > > this works: > http://myweb.brooklyn.liu.edu/jgough/jsmol/jsmol.htm > > this doesn't: > http://myweb.brooklyn.liu.edu/jgough/jsmol/test2.htm > > simple-example that works: > http://myweb.brooklyn.liu.edu/jgough/ChemResources/example1.htm > > simple-example that doesn't work (missing the JSmol.min.js): > http://myweb.brooklyn.liu.edu/jgough/ChemResources/example2.htm > > > I was wondering if anyone could provide some insight. > > Sincerely, > Jonathan > -- Master Visual Studio, SharePoint, SQL, ASP.NET, C# 2012, HTML5, CSS, MVC, Windows 8 Apps, JavaScript and much more. Keep your skills current with LearnDevNow - 3,200 step-by-step video tutorials by Microsoft MVPs and experts. ON SALE this month only -- learn more at: http://p.sf.net/sfu/learnnow-d2d___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
[Jmol-users] help - Question about JSmol
Firstly I would like to thank everyone for their hard work on JSmol and Jmol; Incredible, I love it! I am working on a website to help students here at LIU who are taking organic chemistry. I believe I have figured out how to implement JSmol. In my testing however, I have only been able to get JSmol.min.js to work. For whatever reason, the other, or full packages (JSmoljQuery.js, JSmolCore.js, JSmolApplet.js, JSmolApi.js, JSmolThree.js, JSmolGLmol.js, j2s/j2sjmol.js, JSmol.js) do not want to work; pointing at your site doesn't help, neither does switching browsers. In my hands the Jsmol.htm page works, but test2.htm does not. the test pages on my site are here this works: http://myweb.brooklyn.liu.edu/jgough/jsmol/jsmol.htm this doesn't: http://myweb.brooklyn.liu.edu/jgough/jsmol/test2.htm simple-example that works: http://myweb.brooklyn.liu.edu/jgough/ChemResources/example1.htm simple-example that doesn't work (missing the JSmol.min.js): http://myweb.brooklyn.liu.edu/jgough/ChemResources/example2.htm I was wondering if anyone could provide some insight. Sincerely, Jonathan -- Master Visual Studio, SharePoint, SQL, ASP.NET, C# 2012, HTML5, CSS, MVC, Windows 8 Apps, JavaScript and much more. Keep your skills current with LearnDevNow - 3,200 step-by-step video tutorials by Microsoft MVPs and experts. ON SALE this month only -- learn more at: http://p.sf.net/sfu/learnnow-d2d___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
