[Jmol-users] jmol movie
Fine on MacOS X 10.5.5/Safari/QT resolution clear but rather fast to actually see anything! While it was downloading, it played a bit then stopped and was pixelated. Fine once it was all downloaded though. All the best Nick -- 3D Organic Animations http://www.chemtube3d.com Tel: +44 (0)151-794-3506 (3500 secretary) On 5 Oct 2008, at 20:22, [EMAIL PROTECTED] wrote: Question: Can you watch this movie on your machine? If so, how's the resolution? http://www.stolaf.edu/people/hansonr/temp/rasraf.avi - This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK & win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100&url=/___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] jmol movie
OK, then I think we have the capability now of creating Jmol video movies.
The addition to Jmol, to be in 11.7, not 11.6, is;
write frames {xxx} "movie.jpg"
{xxx} is some atom expression, such as {*} (all frames) or {1.0} (all models
in the first file) or {1.1,1.3,1.5} (three specific frames). Files will be
created by replacing "" with "0001" "0002" etc. as necessary, creating a
set of image files (JPEG in this case).
What you do with those files is up to you. I loaded them into VideoMach just
to see if it could handle them, which it did, apparently. I purposely set
the frame rate very high. But there are plenty of utilities out there that
can do this. Maybe someone with more experience can fill us in on a few of
the options.
Bob
On Sun, Oct 5, 2008 at 9:38 AM, Rich <[EMAIL PROTECTED]> wrote:
> No problem seeing it here Bob (OSX 10.4.11, Camino 1.6.4 with QT 7.5.5
> with the Xvid codec). I did re-export it as an image sequence (145
> images) and created a new movie at 2 fps (using QT) to make it more
> easily watched. There are some rather odd H atoms wandering
> around/displayed which I'm assuming are the result of some strangeness
> in the MD calculations rather than coming from Jmol
>
> Rich
>
> On 1-10-2008 13:25, Robert Hanson wrote:
> > Question: Can you watch this movie on your machine? If so, how's the
> > resolution?
> >
> > http://www.stolaf.edu/people/hansonr/temp/rasraf.avi
> >
> > It's supposed to be 145 frames of a molecular dynamics calculation. It
> was
> > created using the following Jmol script followed by running a program
> called
> > VideoMach:
>
> -
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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Re: [Jmol-users] jmol movie
No problem seeing it here Bob (OSX 10.4.11, Camino 1.6.4 with QT 7.5.5 with the Xvid codec). I did re-export it as an image sequence (145 images) and created a new movie at 2 fps (using QT) to make it more easily watched. There are some rather odd H atoms wandering around/displayed which I'm assuming are the result of some strangeness in the MD calculations rather than coming from Jmol. Rich On 1-10-2008 13:25, Robert Hanson wrote: > Question: Can you watch this movie on your machine? If so, how's the > resolution? > > http://www.stolaf.edu/people/hansonr/temp/rasraf.avi > > It's supposed to be 145 frames of a molecular dynamics calculation. It was > created using the following Jmol script followed by running a program called > VideoMach: - This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK & win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100&url=/ ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] jmol movie
I had no trouble watching the Jmol movie on my computer, running Windows XP.
-Jennifer
Message: 2
Date: Wed, 1 Oct 2008 12:25:34 -0500
From: "Robert Hanson" <[EMAIL PROTECTED]>
Subject: [Jmol-users] jmol movie
To: jmol-users@lists.sourceforge.net
Message-ID:
<[EMAIL PROTECTED]>
Content-Type: text/plain; charset="iso-8859-1"
Question: Can you watch this movie on your machine? If so, how's the
resolution?
http://www.stolaf.edu/people/hansonr/temp/rasraf.avi
It's supposed to be 145 frames of a molecular dynamics calculation. It was
created using the following Jmol script followed by running a program called
VideoMach:
function createFrame
var fname = "movie_"+_frameID[-2][0] + ".jpg"
write image 500 500 @fname
end function
function createMovie
var nframes = {*}.model.max
for (var i = 1; i <= nframes; i = i + 1)
frame @i
createFrame
end for
end function
createMovie
Bob
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-
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Re: [Jmol-users] jmol movie
I could play it just fine (only tried VLC media player - the swiss army
knife of video players) and the resolution is fine. However, I found the
frame rate to be much too fast to be sensible - atoms were flying around
faster than I could discern! When you encode in VideoMach, can you set a
slower frame rate? But, as far as I could tell, all the Jmol end of things
worked out very nicely!
-Tom
On Wed, Oct 1, 2008 at 10:25 AM, Robert Hanson <[EMAIL PROTECTED]> wrote:
> Question: Can you watch this movie on your machine? If so, how's the
> resolution?
>
> http://www.stolaf.edu/people/hansonr/temp/rasraf.avi
>
> It's supposed to be 145 frames of a molecular dynamics calculation. It was
> created using the following Jmol script followed by running a program called
> VideoMach:
>
> function createFrame
> var fname = "movie_"+_frameID[-2][0] + ".jpg"
> write image 500 500 @fname
> end function
>
> function createMovie
> var nframes = {*}.model.max
> for (var i = 1; i <= nframes; i = i + 1)
>frame @i
>createFrame
> end for
> end function
>
> createMovie
>
>
> Bob
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
> -
> This SF.Net email is sponsored by the Moblin Your Move Developer's
> challenge
> Build the coolest Linux based applications with Moblin SDK & win great
> prizes
> Grand prize is a trip for two to an Open Source event anywhere in the world
> http://moblin-contest.org/redirect.php?banner_id=100&url=/
> ___
> Jmol-users mailing list
> Jmol-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
-
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Re: [Jmol-users] jmol movie
Bob, I downloaded it and played in BSPlayer without trouble (WinXP). Resolution is very good, even when resized. QuickTimePlayer requested an extra codec and took me to Xvid webpage (a 628 kB download, GNU GPL). After installing, QT does not ask for anything but shows only a black movie. Maybe after rebooting, but I'm not going to do that now. RealPlayer 10.5 also plays it well. (The animation is too fast for my taste.) Good job! On 1 Oct 2008 at 12:25, Robert Hanson wrote: > Question: Can you watch this movie on your machine? If so, how's the > resolution? - This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK & win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100&url=/ ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] jmol movie
I can view it (using QuickTime player) on a Mac (OS X 10.5.5). It shows up
as a 500x500 movie - looks pretty good to me and plays very fast (it's done
within less than 5 seconds).
Dean
On Wed, Oct 1, 2008 at 10:25 AM, Robert Hanson <[EMAIL PROTECTED]> wrote:
> Question: Can you watch this movie on your machine? If so, how's the
> resolution?
>
> http://www.stolaf.edu/people/hansonr/temp/rasraf.avi
>
> It's supposed to be 145 frames of a molecular dynamics calculation. It was
> created using the following Jmol script followed by running a program called
> VideoMach:
>
> function createFrame
> var fname = "movie_"+_frameID[-2][0] + ".jpg"
> write image 500 500 @fname
> end function
>
> function createMovie
> var nframes = {*}.model.max
> for (var i = 1; i <= nframes; i = i + 1)
>frame @i
>createFrame
> end for
> end function
>
> createMovie
>
>
> Bob
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
> -
> This SF.Net email is sponsored by the Moblin Your Move Developer's
> challenge
> Build the coolest Linux based applications with Moblin SDK & win great
> prizes
> Grand prize is a trip for two to an Open Source event anywhere in the world
> http://moblin-contest.org/redirect.php?banner_id=100&url=/
> ___
> Jmol-users mailing list
> Jmol-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
-
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Build the coolest Linux based applications with Moblin SDK & win great prizes
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[Jmol-users] jmol movie
Question: Can you watch this movie on your machine? If so, how's the
resolution?
http://www.stolaf.edu/people/hansonr/temp/rasraf.avi
It's supposed to be 145 frames of a molecular dynamics calculation. It was
created using the following Jmol script followed by running a program called
VideoMach:
function createFrame
var fname = "movie_"+_frameID[-2][0] + ".jpg"
write image 500 500 @fname
end function
function createMovie
var nframes = {*}.model.max
for (var i = 1; i <= nframes; i = i + 1)
frame @i
createFrame
end for
end function
createMovie
Bob
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
-
This SF.Net email is sponsored by the Moblin Your Move Developer's challenge
Build the coolest Linux based applications with Moblin SDK & win great prizes
Grand prize is a trip for two to an Open Source event anywhere in the world
http://moblin-contest.org/redirect.php?banner_id=100&url=/___
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