Re: [Jmol-users] feedback appreciated

2009-11-19 Thread Angel Herráez
Bob wrote:
> 
> maybe the bottom 2%?

The bottom holds the frank, that could produce some inferference. 
That's why I proposed the top.


Egon wrote:

> And I assume the area would 'highlight' a bit when I am in the 
right
> spot, as visual feedback? A bit less black than black, a bit less
> white than white, or so? Or always a bit more yellowish? Just to 
get a
> good feeling for that 2%?

We must account for diverse background colors. If feasible, maybe 
something similar to the old translucency, i.e. a mask with white 
dots (or black, depending on the color, as it is done eg for lables 
and frank).



Tom wrote:

> This is great -- really lovely! (When is Jmol coming to the 
> iPhone?!) :)

Is Java VM on the iPhone already? That's the key I guess.




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Re: [Jmol-users] feedback appreciated

2009-11-18 Thread Robert Hanson
yeah, I'll say! Go figure.

On Wed, Nov 18, 2009 at 6:44 PM, Thomas Stout wrote:

>
> This is great -- really lovely!  (When is Jmol coming to the iPhone?!)   :)
>
> One oddity that I noticed: when I induce a rotation via a swipe, it
> continues (as expected) until my screensaver comes on --- when the display
> is re-awakened, the display is static.  Not an issue, as far as I am
> concerned, but I thought it fell into the realm of "unexpected".
>
> -Tom
>
> PS -- Firefox 3.0.14 under RHEL5 (32bit on a 64bit machine)
>
>
> On Wed, Nov 18, 2009 at 11:17 AM, Robert Hanson wrote:
>
>> OK, please take another look at
>> http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm
>> I think I fixed the right-side zoom business, and because I thought was
>> working so well, I opted to leave it in as default Jmol, not a special
>> action. The cursor changes to a vertical zoom cursor when you move the mouse
>> into the area. If you then press the left button and drag, you get a zoom,
>> without regard to where you are in the window.
>>
>> The wheel business should be fixed as well. (Please check that I do not
>> have that backwards.)
>>
>>
>> --
>> Robert M. Hanson
>> Professor of Chemistry
>> St. Olaf College
>> 1520 St. Olaf Ave.
>> Northfield, MN 55057
>> http://www.stolaf.edu/people/hansonr
>> phone: 507-786-3107
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>
>>
>> --
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>> 30-Day
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>>
>>
>
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Re: [Jmol-users] feedback appreciated

2009-11-18 Thread Thomas Stout
This is great -- really lovely!  (When is Jmol coming to the iPhone?!)   :)

One oddity that I noticed: when I induce a rotation via a swipe, it
continues (as expected) until my screensaver comes on --- when the display
is re-awakened, the display is static.  Not an issue, as far as I am
concerned, but I thought it fell into the realm of "unexpected".

-Tom

PS -- Firefox 3.0.14 under RHEL5 (32bit on a 64bit machine)


On Wed, Nov 18, 2009 at 11:17 AM, Robert Hanson  wrote:

> OK, please take another look at
> http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm
> I think I fixed the right-side zoom business, and because I thought was
> working so well, I opted to leave it in as default Jmol, not a special
> action. The cursor changes to a vertical zoom cursor when you move the mouse
> into the area. If you then press the left button and drag, you get a zoom,
> without regard to where you are in the window.
>
> The wheel business should be fixed as well. (Please check that I do not
> have that backwards.)
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
> --
> Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day
> trial. Simplify your report design, integration and deployment - and focus
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Re: [Jmol-users] feedback appreciated

2009-11-18 Thread Egon Willighagen
Nice!

On Thu, Nov 19, 2009 at 12:43 AM, Robert Hanson  wrote:
> function testit {
>  
> print _atomPicked
> 
> }
>
> set pickCallback "jmolscript:testit";

Egon

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Re: [Jmol-users] feedback appreciated

2009-11-18 Thread Robert Hanson
function testit {
 
print _atomPicked

}

set pickCallback "jmolscript:testit";


On Wed, Nov 18, 2009 at 5:29 PM, Egon Willighagen <
egon.willigha...@gmail.com> wrote:

> On Thu, Nov 19, 2009 at 12:27 AM, Robert Hanson 
> wrote:
> > Hmm, I was thinking more along the lines of within a certain area of the
> > window. You can always trap a pickCallback for atoms.
>
> True. I did not think of it that this could be done on a purely Jmol
> script level too... how does that work?
>
> Egon
>
>
> --
> Post-doc @ Uppsala University
> Homepage: http://egonw.github.com/
> Blog: http://chem-bla-ics.blogspot.com/
> PubList: http://www.citeulike.org/user/egonw/tag/papers
>
>
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Re: [Jmol-users] feedback appreciated

2009-11-18 Thread Egon Willighagen
On Thu, Nov 19, 2009 at 12:27 AM, Robert Hanson  wrote:
> Hmm, I was thinking more along the lines of within a certain area of the
> window. You can always trap a pickCallback for atoms.

True. I did not think of it that this could be done on a purely Jmol
script level too... how does that work?

Egon


-- 
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Re: [Jmol-users] feedback appreciated

2009-11-18 Thread Robert Hanson
Hmm, I was thinking more along the lines of within a certain area of the
window. You can always trap a pickCallback for atoms.

On Wed, Nov 18, 2009 at 5:19 PM, Egon Willighagen <
egon.willigha...@gmail.com> wrote:

> On Thu, Nov 19, 2009 at 12:14 AM, Robert Hanson 
> wrote:
> > Why not just make it anywhere you want? any function?
>
> Say, on top/around of a certain atom, bond or secondairy structure?
>
> Egon
>
>
> --
> Post-doc @ Uppsala University
> Homepage: http://egonw.github.com/
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> PubList: http://www.citeulike.org/user/egonw/tag/papers
>
>
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Re: [Jmol-users] feedback appreciated

2009-11-18 Thread Egon Willighagen
On Thu, Nov 19, 2009 at 12:14 AM, Robert Hanson  wrote:
> Why not just make it anywhere you want? any function?

Say, on top/around of a certain atom, bond or secondairy structure?

Egon


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Re: [Jmol-users] feedback appreciated

2009-11-18 Thread Robert Hanson
Why not just make it anywhere you want? any function?

On Wed, Nov 18, 2009 at 5:12 PM, Egon Willighagen <
egon.willigha...@gmail.com> wrote:

> On Wed, Nov 18, 2009 at 10:38 PM, Jeff Hansen  wrote:
> > Lets just go extreme with this.  Make every side of the applet available
> for
> > adjusting something.  I could see zoom, Z-rotation, slab, atom size.  Why
> > not just make it configurable so a little javascript or Jmol script can
> > assign a property to a particular side and we can adjust whatever we want
> to
> > adjust?  Kind of a built in slider.
>
> And I assume the area would 'highlight' a bit when I am in the right
> spot, as visual feedback? A bit less black than black, a bit less
> white than white, or so? Or always a bit more yellowish? Just to get a
> good feeling for that 2%?
>
> Egon
>
> --
> Post-doc @ Uppsala University
> Homepage: http://egonw.github.com/
> Blog: http://chem-bla-ics.blogspot.com/
> PubList: http://www.citeulike.org/user/egonw/tag/papers
>
>
> --
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Re: [Jmol-users] feedback appreciated

2009-11-18 Thread Egon Willighagen
On Wed, Nov 18, 2009 at 10:38 PM, Jeff Hansen  wrote:
> Lets just go extreme with this.  Make every side of the applet available for
> adjusting something.  I could see zoom, Z-rotation, slab, atom size.  Why
> not just make it configurable so a little javascript or Jmol script can
> assign a property to a particular side and we can adjust whatever we want to
> adjust?  Kind of a built in slider.

And I assume the area would 'highlight' a bit when I am in the right
spot, as visual feedback? A bit less black than black, a bit less
white than white, or so? Or always a bit more yellowish? Just to get a
good feeling for that 2%?

Egon

-- 
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Re: [Jmol-users] feedback appreciated

2009-11-18 Thread Jeff Hansen
Lets just go extreme with this.  Make every side of the applet  
available for adjusting something.  I could see zoom, Z-rotation,  
slab, atom size.  Why not just make it configurable so a little  
javascript or Jmol script can assign a property to a particular side  
and we can adjust whatever we want to adjust?  Kind of a built in  
slider.



***
Jeff Hansen
Department of Chemistry and Biochemistry
DePauw University
602 S. College Ave.
Greencastle, IN 46135
jhan...@depauw.edu
***


On Nov 18, 2009, at 4:12 PM, Robert Hanson wrote:


maybe the bottom 2%?

2009/11/18 Angel Herráez 
On 18 Nov 2009 at 13:17, Robert Hanson wrote:
> OK, please take another look at 
http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm


Nice!
 This brings an idea: how about having also the 6% top of the applet  
do Z-rotation? It's often
difficult to do that by shift-horizDrag without changing zoom (yes,  
I know there are specific

ways of doing just Zrot, but I never remember or care to)


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Re: [Jmol-users] feedback appreciated

2009-11-18 Thread Robert Hanson
maybe the bottom 2%?

2009/11/18 Angel Herráez 

> On 18 Nov 2009 at 13:17, Robert Hanson wrote:
> > OK, please take another look at
> http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm
>
>
> Nice!
>  This brings an idea: how about having also the 6% top of the applet do
> Z-rotation? It's often
> difficult to do that by shift-horizDrag without changing zoom (yes, I know
> there are specific
> ways of doing just Zrot, but I never remember or care to)
>
>
>
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Re: [Jmol-users] feedback appreciated

2009-11-18 Thread Angel Herráez
On 18 Nov 2009 at 13:17, Robert Hanson wrote:
> OK, please take another look at 
> http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm


Nice!
 This brings an idea: how about having also the 6% top of the applet do 
Z-rotation? It's often 
difficult to do that by shift-horizDrag without changing zoom (yes, I know 
there are specific 
ways of doing just Zrot, but I never remember or care to)


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Re: [Jmol-users] feedback appreciated

2009-11-18 Thread Robert Hanson
OK, please take another look at
http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm
I think I fixed the right-side zoom business, and because I thought was
working so well, I opted to leave it in as default Jmol, not a special
action. The cursor changes to a vertical zoom cursor when you move the mouse
into the area. If you then press the left button and drag, you get a zoom,
without regard to where you are in the window.

The wheel business should be fixed as well. (Please check that I do not have
that backwards.)

-- 
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Re: [Jmol-users] feedback appreciated

2009-11-18 Thread Robert Hanson
Thanks, Rolf. Quite possible about the wheel -- I didn't test this.

swipe -- I probably didn't explain that correctly.

On Wed, Nov 18, 2009 at 7:13 AM, Rolf Huehne  wrote:

> >
> > swipe -- with a finger this is a rapid movement that releases as it
> > terminates. With a mouse, it's a LEFT-button action for which the button
> is
> > released BEFORE the motion stops. (Takes some getting used to.) This
> gesture
> > produces a sort of Google-Earth action that starts the model spinning at
> a
> > speed that depends upon the speed of the swipe.
> >
> I wasn't able to start spinning this way. Even separating mouse movement
> and button click by using two hands to ensure continuous movement after
> releasing the button didn't help.
>
> hmm...


> > zoom-slider -- with set allowGestures TRUE, you can now just treat the
> > screen as a touchpad and scroll through zooms just be doing a vertical
> > LEFT-drag within a few percent of the right side of the applet window.
> >
> Principally it might be useful as an alternative. But I think zooming
> should not be mixed with rotation and vice versa. Currently zooming
> starts for example additionally after the mouse leaves the applet at the
> right side. And also rotation starts additionally after the mouse leaves
> the applet at the right side. Or rotation replaces zoom if the mouse
> leaves the "zoom zone" to the left side. (Since there is no visible
> border of the "zoom zone" and since it is very small this happened very
> frequently during my tests.) This makes zooming and rotation rather
> unpredictable and uncontrollable.
>
> right -- I'll see what I can do about that.


> The "zoom zone" is quite narrow in the small test applet. So it is
> difficult to actually hit it with the mouse. It would be helpful if the
> mouse cursor would already change after reaching the zone and not only
> after pressing the mouse button. This might also help novice users to
> find this feature if it is activated.
>
>
I'll make the cursor move and decouple it from rotation.


> On my system the mouse wheel didn't work any more within Jmol. (Although
> it did work in another window with an older Jmol version (11.8.8) opened
> in parallel.) I had sometimes trouble to activate zooming with the mouse
> wheel before, but mainly on Windows and not on Linux. And most of the
> time I could finally get it to work after doing some clicking within the
> applet. ( I don't remember the details right now.) But here I could not
> get it to work.
>
> quite possible -- I didn't test this.


>  Test system
> -
> OS: OpenSuSE 11.1 (x86_64)
>   Java: 1.6.0_15
> Browser: Firefox 3.0.15
>
> Regards,
> Rolf
>
>
> --
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> on
> what you do best, core application coding. Discover what's new with
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>



-- 
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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Re: [Jmol-users] feedback appreciated

2009-11-18 Thread Angel Herráez
> set allowGestures

Sounds interesting, Bob

I wasn't very enthusiastic about swipe, but now I like it! It's very 
smooth and easy to control.


> are related to giving Jmol a "multi-touch" feel 

No chance to test this.


> zoom-slider -- with set allowGestures TRUE, you can now just treat 
> the screen as a touchpad and scroll through zooms just be doing a 
> vertical LEFT-drag within a few percent of the right side of the 
> applet window. 

I agree with Rolf it's very narrow. A little translucent shadow would 
help to locate the hot zone, as well as the cursor change.


> but that requires a multi-touch screen, which I don't have yet.) 

I put my eyes on a multi-touch TABLE [1], but I don't think I'll get 
it. Maybe Santa Claus...   :-D


Great work, as always, Bob!


[1] - http://wiki.jmol.org/index.php?title=MultiUser_Jmol



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Re: [Jmol-users] feedback appreciated

2009-11-18 Thread Rolf Huehne
Robert Hanson wrote:
> Jmol users,
> 
> Jmol 11.9.9 will have a couple of mouse-related new features. One that
> should be useful is
> 
> show mouse
> 
> or
> 
> show mouse [keyword]
> 
> such as
> 
> show mouse move
> 
> or
> 
> show mouse pick
> 
> These return information about what the mouse buttons do.
> 
Very nice.

> In addition, because underneath the surface Jmol is now completely changed
> in how it handles mouse events, in the future you will be able to assign
> button/key combinations to all sorts of actions. Two new actions that can be
> assigned using
> 
> set allowGestures
> 
> are related to giving Jmol a "multi-touch" feel -- on certain machines being
> able to use two or more fingers to direct the application. These include:
> 
> swipe -- with a finger this is a rapid movement that releases as it
> terminates. With a mouse, it's a LEFT-button action for which the button is
> released BEFORE the motion stops. (Takes some getting used to.) This gesture
> produces a sort of Google-Earth action that starts the model spinning at a
> speed that depends upon the speed of the swipe.
> 
I wasn't able to start spinning this way. Even separating mouse movement
and button click by using two hands to ensure continuous movement after
releasing the button didn't help.

> zoom-slider -- with set allowGestures TRUE, you can now just treat the
> screen as a touchpad and scroll through zooms just be doing a vertical
> LEFT-drag within a few percent of the right side of the applet window.
> 
Principally it might be useful as an alternative. But I think zooming
should not be mixed with rotation and vice versa. Currently zooming
starts for example additionally after the mouse leaves the applet at the
right side. And also rotation starts additionally after the mouse leaves
the applet at the right side. Or rotation replaces zoom if the mouse
leaves the "zoom zone" to the left side. (Since there is no visible
border of the "zoom zone" and since it is very small this happened very
frequently during my tests.) This makes zooming and rotation rather
unpredictable and uncontrollable.

The "zoom zone" is quite narrow in the small test applet. So it is
difficult to actually hit it with the mouse. It would be helpful if the
mouse cursor would already change after reaching the zone and not only
after pressing the mouse button. This might also help novice users to
find this feature if it is activated.

On my system the mouse wheel didn't work any more within Jmol. (Although
it did work in another window with an older Jmol version (11.8.8) opened
in parallel.) I had sometimes trouble to activate zooming with the mouse
wheel before, but mainly on Windows and not on Linux. And most of the
time I could finally get it to work after doing some clicking within the
applet. ( I don't remember the details right now.) But here I could not
get it to work.

 Test system
-
 OS: OpenSuSE 11.1 (x86_64)
   Java: 1.6.0_15
Browser: Firefox 3.0.15

Regards,
Rolf

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[Jmol-users] feedback appreciated

2009-11-17 Thread Robert Hanson
Jmol users,

Jmol 11.9.9 will have a couple of mouse-related new features. One that
should be useful is

show mouse

or

show mouse [keyword]

such as

show mouse move

or

show mouse pick

These return information about what the mouse buttons do.

In addition, because underneath the surface Jmol is now completely changed
in how it handles mouse events, in the future you will be able to assign
button/key combinations to all sorts of actions. Two new actions that can be
assigned using

set allowGestures

are related to giving Jmol a "multi-touch" feel -- on certain machines being
able to use two or more fingers to direct the application. These include:

swipe -- with a finger this is a rapid movement that releases as it
terminates. With a mouse, it's a LEFT-button action for which the button is
released BEFORE the motion stops. (Takes some getting used to.) This gesture
produces a sort of Google-Earth action that starts the model spinning at a
speed that depends upon the speed of the swipe.

zoom-slider -- with set allowGestures TRUE, you can now just treat the
screen as a touchpad and scroll through zooms just be doing a vertical
LEFT-drag within a few percent of the right side of the applet window.

Give these a try at
http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm and tell me what
you think. More ideas for cool gestures? (I'm working on "pinch" and
"stretch" to zoom out/in, like an iPod, but that requires a multi-touch
screen, which I don't have yet.)

Bob

-- 
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
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trial. Simplify your report design, integration and deployment - and focus on 
what you do best, core application coding. Discover what's new with
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