Re: [Jmol-users] difficulties encountered in switching to JSmol -- part deux
I downloaded the new Jmol2.js file you gave me, and it works great! Thanks. So with this new JSmol, all the Java is now running server-side, is that correct? I no longer have to worry about whether the user's Java is enabled? From: Robert Hanson hans...@stolaf.edumailto:hans...@stolaf.edu Reply-To: jmol-users@lists.sourceforge.netmailto:jmol-users@lists.sourceforge.net Date: Mon, 23 Sep 2013 22:18:28 -0500 To: jmol-users@lists.sourceforge.netmailto:jmol-users@lists.sourceforge.net jmol-users@lists.sourceforge.netmailto:jmol-users@lists.sourceforge.net Subject: Re: [Jmol-users] difficulties encountered in switching to JSmol -- part deux There may be a few differences like that. For now, just use Jmol.script(yourAppid, 'load DATA mydata\n' + yourInlineData + '\nEND mydata ') or give this one a try: http://chemapps.stolaf.edu/jmol/jsmol/js/Jmol2.js On Mon, Sep 23, 2013 at 3:15 PM, Grossman, Robert B robert.gross...@uky.edumailto:robert.gross...@uky.edu wrote: OK, I read a little further down in the Wiki and saw that I could accomplish the switch another way: leave the calls to jmolApplet(), etc. alone and instead use both JSmol.min.js and Jmol2.js as resources. So I did so, and I also added a symlink to the jsmol/j2s folder in the same folder as the page that calls the applet. So now JSmol loads, but I get this alert: jmolLoadInline not implemented So, any chance of this method being implemented in the near future? Or maybe it has already been implemented in a more recent version? I'm using jsmol-13.3.4. (BTW, I tried to download JSmol 13.3.5 from SourceForge, but decompression failed. Instead I downloaded one of the 13.3.4 versions.) -- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register http://pubads.g.doubleclick.net/gampad/clk?id=60133471iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.netmailto:Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register http://pubads.g.doubleclick.net/gampad/clk?id=60133471iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.netmailto:Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users -- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register http://pubads.g.doubleclick.net/gampad/clk?id=60133471iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] difficulties encountered in switching to JSmol -- part deux
Hi Robert, I am utterly confused now. What is this Jmol2.js? Are you saying that using this file one can run Jmol on the client machine even if it does not have a Java installed? In other words, Jmol2.js runs Java from the server side? Is that correct? Can someone please elaborate on this point. I recently switched to JSmol simply because many of my collaborators complained about my Jmol interface not running on their machines due to Java issues. Now, if Jmol2.js can eliminate the need for client to have a fully functional Java, then why do I need to to switch to JSmol? I am lost on this. Amjad *AMJAD FAROOQ PhD DIC | Associate Professor Dept of Biochemistry Molecular Biology | Miller School of Medicine | University of Miami | Miami | FL 33136 Located @ Gautier Building #217 | Mail @ 1011 NW 15th Street #217, Miami , FL 33136 am...@farooqlab.net | off 305-243-2429 | lab 305-243-9799 | fax 305-243-3955 | www.farooqlab.net* On Tue, Sep 24, 2013 at 9:49 AM, Grossman, Robert B robert.gross...@uky.edu wrote: I downloaded the new Jmol2.js file you gave me, and it works great! Thanks. So with this new JSmol, all the Java is now running server-side, is that correct? I no longer have to worry about whether the user's Java is enabled? From: Robert Hanson hans...@stolaf.edu Reply-To: jmol-users@lists.sourceforge.net Date: Mon, 23 Sep 2013 22:18:28 -0500 To: jmol-users@lists.sourceforge.net jmol-users@lists.sourceforge.net Subject: Re: [Jmol-users] difficulties encountered in switching to JSmol -- part deux There may be a few differences like that. For now, just use Jmol.script(yourAppid, 'load DATA mydata\n' + yourInlineData + '\nEND mydata ') or give this one a try: http://chemapps.stolaf.edu/jmol/jsmol/js/Jmol2.js On Mon, Sep 23, 2013 at 3:15 PM, Grossman, Robert B robert.gross...@uky.edu wrote: OK, I read a little further down in the Wiki and saw that I could accomplish the switch another way: leave the calls to jmolApplet(), etc. alone and instead use both JSmol.min.js and Jmol2.js as resources. So I did so, and I also added a symlink to the jsmol/j2s folder in the same folder as the page that calls the applet. So now JSmol loads, but I get this alert: jmolLoadInline not implemented So, any chance of this method being implemented in the near future? Or maybe it has already been implemented in a more recent version? I'm using jsmol-13.3.4. (BTW, I tried to download JSmol 13.3.5 from SourceForge, but decompression failed. Instead I downloaded one of the 13.3.4 versions.) -- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register http://pubads.g.doubleclick.net/gampad/clk?id=60133471iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register http://pubads.g.doubleclick.net/gampad/clk?id=60133471iu=/4140/ostg.clktrk___Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users -- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register http://pubads.g.doubleclick.net/gampad/clk?id=60133471iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users -- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register http
Re: [Jmol-users] difficulties encountered in switching to JSmol -- part deux
Both Java and JavaScript are computed on client side. The huge difference is that, as you mentioned, there's no need for Oracle Java plugin any more - every bit of JavaScript runs in the browser. Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2013/9/24 Grossman, Robert B robert.gross...@uky.edu I downloaded the new Jmol2.js file you gave me, and it works great! Thanks. So with this new JSmol, all the Java is now running server-side, is that correct? I no longer have to worry about whether the user's Java is enabled? From: Robert Hanson hans...@stolaf.edu Reply-To: jmol-users@lists.sourceforge.net Date: Mon, 23 Sep 2013 22:18:28 -0500 To: jmol-users@lists.sourceforge.net jmol-users@lists.sourceforge.net Subject: Re: [Jmol-users] difficulties encountered in switching to JSmol -- part deux There may be a few differences like that. For now, just use Jmol.script(yourAppid, 'load DATA mydata\n' + yourInlineData + '\nEND mydata ') or give this one a try: http://chemapps.stolaf.edu/jmol/jsmol/js/Jmol2.js On Mon, Sep 23, 2013 at 3:15 PM, Grossman, Robert B robert.gross...@uky.edu wrote: OK, I read a little further down in the Wiki and saw that I could accomplish the switch another way: leave the calls to jmolApplet(), etc. alone and instead use both JSmol.min.js and Jmol2.js as resources. So I did so, and I also added a symlink to the jsmol/j2s folder in the same folder as the page that calls the applet. So now JSmol loads, but I get this alert: jmolLoadInline not implemented So, any chance of this method being implemented in the near future? Or maybe it has already been implemented in a more recent version? I'm using jsmol-13.3.4. (BTW, I tried to download JSmol 13.3.5 from SourceForge, but decompression failed. Instead I downloaded one of the 13.3.4 versions.) -- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register http://pubads.g.doubleclick.net/gampad/clk?id=60133471iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register http://pubads.g.doubleclick.net/gampad/clk?id=60133471iu=/4140/ostg.clktrk___Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users -- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register http://pubads.g.doubleclick.net/gampad/clk?id=60133471iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users -- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register http://pubads.g.doubleclick.net/gampad/clk?id=60133471iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] difficulties encountered in switching to JSmol -- part deux
Maciek, So you need Java running on the client, but not enabled in the browser. Is that right? -- Bob G. From: Maciek Wójcikowski mac...@wojcikowski.plmailto:mac...@wojcikowski.pl Reply-To: jmol-users@lists.sourceforge.netmailto:jmol-users@lists.sourceforge.net Date: Tue, 24 Sep 2013 15:56:34 +0200 To: jmol-users@lists.sourceforge.netmailto:jmol-users@lists.sourceforge.net Subject: Re: [Jmol-users] difficulties encountered in switching to JSmol -- part deux Both Java and JavaScript are computed on client side. The huge difference is that, as you mentioned, there's no need for Oracle Java plugin any more - every bit of JavaScript runs in the browser. Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.plmailto:mac...@wojcikowski.pl 2013/9/24 Grossman, Robert B robert.gross...@uky.edumailto:robert.gross...@uky.edu I downloaded the new Jmol2.js file you gave me, and it works great! Thanks. So with this new JSmol, all the Java is now running server-side, is that correct? I no longer have to worry about whether the user's Java is enabled? From: Robert Hanson hans...@stolaf.edumailto:hans...@stolaf.edu Reply-To: jmol-users@lists.sourceforge.netmailto:jmol-users@lists.sourceforge.net Date: Mon, 23 Sep 2013 22:18:28 -0500 To: jmol-users@lists.sourceforge.netmailto:jmol-users@lists.sourceforge.net jmol-users@lists.sourceforge.netmailto:jmol-users@lists.sourceforge.net Subject: Re: [Jmol-users] difficulties encountered in switching to JSmol -- part deux There may be a few differences like that. For now, just use Jmol.script(yourAppid, 'load DATA mydata\n' + yourInlineData + '\nEND mydata ') or give this one a try: http://chemapps.stolaf.edu/jmol/jsmol/js/Jmol2.js On Mon, Sep 23, 2013 at 3:15 PM, Grossman, Robert B robert.gross...@uky.edumailto:robert.gross...@uky.edu wrote: OK, I read a little further down in the Wiki and saw that I could accomplish the switch another way: leave the calls to jmolApplet(), etc. alone and instead use both JSmol.min.js and Jmol2.js as resources. So I did so, and I also added a symlink to the jsmol/j2s folder in the same folder as the page that calls the applet. So now JSmol loads, but I get this alert: jmolLoadInline not implemented So, any chance of this method being implemented in the near future? Or maybe it has already been implemented in a more recent version? I'm using jsmol-13.3.4. (BTW, I tried to download JSmol 13.3.5 from SourceForge, but decompression failed. Instead I downloaded one of the 13.3.4 versions.) -- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register http://pubads.g.doubleclick.net/gampad/clk?id=60133471iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.netmailto:Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register http://pubads.g.doubleclick.net/gampad/clk?id=60133471iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.netmailto:Jmol-users@lists.sourceforge.nethttps://lists.sourceforge.net/lists/listinfo/jmol-users -- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register http://pubads.g.doubleclick.net/gampad/clk?id=60133471iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.netmailto:Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users -- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors
Re: [Jmol-users] difficulties encountered in switching to JSmol -- part deux
Dear Bob and Amjad, No, for JSmol you don't need Java any more. JavaScript is not Java (Oracle), but still is run on client side. Although JavaScript doesn't require any plugins. Just to cite header of Jmol2.js file, which Bob (Hanson) provided: Script replacement for legacy Jmol.js that uses JSmol instead. Can be used to turn most legacy Jmol.js-based sites to JSmol. Presumes prior loading of JSmol.min.js 1) rename your current Jmol.js file Jmol_old.js in case you want to undo this 2) replace that file with this one 3) If you use JmolInitialize, put the Jar files from the java/ directory here in that designated directory and make a new subdirectory there called j2s. Then put all j2s/* files in that j2s subdirectory. If you don't use JmolIinitialize, all the jar files should go into a subdirectory named java in the same directory as your web page, and all the JavaScript should go into a subdirectory j2s also in the same directory as your web page, just like it is here. 3) copy all j2s/* files into a directory on your site if you want to use HTML5 (defaults to ./j2s) 4) copy all java/* files into a directory on your site if you want to use Java (defaults to ./java) 5) try your page and see how it goes. You may still have some problems, because not all of the methods in the original Jmol.js are included here. Let me know if that's the case. Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2013/9/24 Grossman, Robert B robert.gross...@uky.edu Maciek, So you need Java running on the client, but not enabled in the browser. Is that right? -- Bob G. From: Maciek Wójcikowski mac...@wojcikowski.pl Reply-To: jmol-users@lists.sourceforge.net Date: Tue, 24 Sep 2013 15:56:34 +0200 To: jmol-users@lists.sourceforge.net Subject: Re: [Jmol-users] difficulties encountered in switching to JSmol -- part deux Both Java and JavaScript are computed on client side. The huge difference is that, as you mentioned, there's no need for Oracle Java plugin any more - every bit of JavaScript runs in the browser. Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2013/9/24 Grossman, Robert B robert.gross...@uky.edu I downloaded the new Jmol2.js file you gave me, and it works great! Thanks. So with this new JSmol, all the Java is now running server-side, is that correct? I no longer have to worry about whether the user's Java is enabled? From: Robert Hanson hans...@stolaf.edu Reply-To: jmol-users@lists.sourceforge.net Date: Mon, 23 Sep 2013 22:18:28 -0500 To: jmol-users@lists.sourceforge.net jmol-users@lists.sourceforge.net Subject: Re: [Jmol-users] difficulties encountered in switching to JSmol -- part deux There may be a few differences like that. For now, just use Jmol.script(yourAppid, 'load DATA mydata\n' + yourInlineData + '\nEND mydata ') or give this one a try: http://chemapps.stolaf.edu/jmol/jsmol/js/Jmol2.js On Mon, Sep 23, 2013 at 3:15 PM, Grossman, Robert B robert.gross...@uky.edu wrote: OK, I read a little further down in the Wiki and saw that I could accomplish the switch another way: leave the calls to jmolApplet(), etc. alone and instead use both JSmol.min.js and Jmol2.js as resources. So I did so, and I also added a symlink to the jsmol/j2s folder in the same folder as the page that calls the applet. So now JSmol loads, but I get this alert: jmolLoadInline not implemented So, any chance of this method being implemented in the near future? Or maybe it has already been implemented in a more recent version? I'm using jsmol-13.3.4. (BTW, I tried to download JSmol 13.3.5 from SourceForge, but decompression failed. Instead I downloaded one of the 13.3.4 versions.) -- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register http://pubads.g.doubleclick.net/gampad/clk?id=60133471iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors
Re: [Jmol-users] difficulties encountered in switching to JSmol -- part deux
At the risk of being repetitive, let's set this clear: Old and new Jmol needs Java, both for the application (stand-alone program in your computer) and for the applet inside webpages (using the Java plugín which is installed/added to your browser when you install Java in the computer). Current policies of both Java and the browsers make more difficult to run Java applets, needing permissions, confirmation dialogs and so. Still, they runs nicekly once you are confident to give the permissions (except for pages with applets in local disk, which are nearly impossible to run now). Java runs in the client machine. The applet gets downloaded as part of the page. New JSmol (only used as objects inside webpages, no application here) does not use Java. It runs JavaScript + HTML5 code, in the browser. All modern browsers can run it (that means Internet Explorer mst be version 10, maybe 9 too --can't remember now; no problems with Safari, Chrome, Firefox, Opera?). There is NO Java requirement at all. This caters for those who don't want or are not allowed to install Java in their computer, and for devices that do not support Java --like iOS and Android tablets/phones. Javascript runs in the client machine too. So in any case the server only delivers the pages. There are a couple of exceptions (loading binary files, loading files from external databases) but we can omit that for this general description. What Jmol2.js does is convert your existing page with JmolApplets based on Jmol.js to the new Jmol-JSO format (that's Jmol JavaScript Object) --withuout you ever changing a bit in the page code**. Jmol-JSO may be set to use Java Jmol applets or use HTML4 JSmol. You need to configure that in your copy of Jmol2.js. (( ** Well, you do need to change 2 lines in your page headers. See the Wiki. )) Please re-read the documentation we have. I know it is not extensive, but I think it does explain most of these things. http://wiki.jmol.org/index.php/JSmol http://wiki.jmol.org/index.php/JSmol#Conversion_using_the_Jmol2.js_.27 adapter.27_library And you are always welcome to contribute in the Wiki contents. Good luck with your J(S)mol prjects! -- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register http://pubads.g.doubleclick.net/gampad/clk?id=60133471iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] difficulties encountered in switching to JSmol -- part deux
Specific answers: Grossman, Robert B wrote: So you need Java running on the client, but not enabled in the browser. Is that right? No. There is no use of Java when you go for JSmol. Amjad Farooq wrote: In other words, Jmol2.js runs Java from the server side? Is that correct? No. Jmol2.js (which is Javascript) adapts your (old) page to use JSmol (no Java) instead fo Jmol (Java applet). if Jmol2.js can eliminate the need for client to have a fully functional Java, then why do I need to to switch to JSmol? You ARE switching to JSmol, either by manually writing your pages or by using Jmol2.js to adapt your old pages without changing therm. Grossman, Robert B wrote: So with this new JSmol, all the Java is now running server-side, is that correct? No. Nothing running in the server. I no longer have to worry about whether the user's Java is enabled? Yes. No worries. -- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register http://pubads.g.doubleclick.net/gampad/clk?id=60133471iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] difficulties encountered in switching to JSmol -- part deux
There may be a few differences like that. For now, just use Jmol.script(yourAppid, 'load DATA mydata\n' + yourInlineData + '\nEND mydata ') or give this one a try: http://chemapps.stolaf.edu/jmol/jsmol/js/Jmol2.js On Mon, Sep 23, 2013 at 3:15 PM, Grossman, Robert B robert.gross...@uky.edu wrote: OK, I read a little further down in the Wiki and saw that I could accomplish the switch another way: leave the calls to jmolApplet(), etc. alone and instead use both JSmol.min.js and Jmol2.js as resources. So I did so, and I also added a symlink to the jsmol/j2s folder in the same folder as the page that calls the applet. So now JSmol loads, but I get this alert: jmolLoadInline not implemented So, any chance of this method being implemented in the near future? Or maybe it has already been implemented in a more recent version? I'm using jsmol-13.3.4. (BTW, I tried to download JSmol 13.3.5 from SourceForge, but decompression failed. Instead I downloaded one of the 13.3.4 versions.) -- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register http://pubads.g.doubleclick.net/gampad/clk?id=60133471iu=/4140/ostg.clktrk ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register http://pubads.g.doubleclick.net/gampad/clk?id=60133471iu=/4140/ostg.clktrk___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
