Thanks for your advice.
I tried it with the higher value (3M) but the program broke down
like before.
I increased the other buffer values too after that and am
testing now if this helps.
Greetings,
Daniel
Gelu Gogancea wrote:
Hi,
Maybe it's a good ideea to increase the value of max_allowed_packet(from
my.cnf configuration file) to 2M.By default is 1MB.
Regards,
Gelu
_
G.NET SOFTWARE COMPANY
Permanent e-mail address : [EMAIL PROTECTED]
[EMAIL PROTECTED]
- Original Message -
From: Daniel Wetzler [EMAIL PROTECTED]
To: MySQL Mailing Liste [EMAIL PROTECTED]
Sent: Wednesday, January 15, 2003 11:54 AM
Subject: Problem using the C-API for MySQL Program breakdown after about 1
Mio SQL-statements
Hallo,
I apologize for my bad english.
Im desperate about the followwing problem :
I'm using the MySQL C-API for accesssing a database with about 1.2 Mio
SQL-Statemants.
Therefor I make a connect to the database and after that a loop
starts a Subprogram about 1.2 Mio times in which a SQL-statement is sent
to the database. My problem is that the program breaks down after about
1 Mio iterations with a Bus error and Segmentation fault.
If I analyse the core dump with a debugger I get the following statements
:
The program breaks down at line :
if (mysql_query(mysql2, abfrage)) {
printf (Fehler bei der Abfrage ! Fehler : %s \n %s \n,
mysql_error(mysql2), abfrage);
exit(1);
Program terminated with signal 10, Bus Error.
#0 0xff35a90c in vio_is_blocking () from
/usr/local/mysql/lib/mysql/libmysqlclient.so.10
(gdb) up
#1 0xff35a4e0 in net_clear () from
/usr/local/mysql/lib/mysql/libmysqlclient.so.10
(gdb) up
#2 0xff356abc in simple_command () from
/usr/local/mysql/lib/mysql/libmysqlclient.so.10
(gdb) up
#3 0xff3594e8 in mysql_real_query () from
/usr/local/mysql/lib/mysql/libmysqlclient.so.10
(gdb) up
#4 0x11728 in read_coor (i=1065778) at nclu-datenbank.c:279
(gdb) up
I checked the SQL statement which is sent at that time an it is ok
and leads to suitable result.
Does any one have an idea why my program breaks down ?
Greetings,
Daniel
P.S :
Here is my code for accessing the database :
(some code. )
mysql2 = mysql_init(NULL);
if (mysql2 == NULL){
printf (mysql_init() fehlgeschlagen (kein Speicher ?)\n);
exit (1);
}
if (mysql_real_connect( mysql2, def_host_name, def_user_name,
def_password, def_db_name, 0, NULL, 0) == NULL){
printf(Datenbankverbindung hat nicht geklappt.\n);
}
printf (Datenbankverbindung 1 ok\n);
while(ergebnisarray[zaehler] != NULL) {
/*printf (zahl = %i\n, ergebnisarray[zaehler]);*/
j=read_coor(ergebnisarray[zaehler]);
/* This is my fuction which sends the SQL-statements accessed 1.2 Mio
times */
zaehler++;
}
mysql_close(mysql2);
(some code)
In my function I access the database with the following lines :
(some code)..
for (seglaengenzaehler = 1; seglaengenzaehler = seglength;
seglaengenzaehler ++) {
sprintf (abfrage, select xkoor, ykoor, zkoor, id from %iloop inner
join pdbmolekuel on m%i=molekuelnr inner join pdbatom on molekuelnr =
molekuelzuordnung where loopnummer = %i, seglength, seglaengenzaehler,
i);
if (mysql_query(mysql2, abfrage)) {
printf (Fehler bei der Abfrage ! Fehler : %s \n %s \n,
mysql_error(mysql2), abfrage);
exit(1);
}
else {
ergebnis = mysql_use_result(mysql2);
}
}
if (ergebnis == NULL) {
printf (Fehler beim show tables !\n Fehler : %s ,
mysql_error(mysql2));
}
else {
/*printf (Alles in Ordnung !\n);*/
while((myzeile = mysql_fetch_row(ergebnis)))
{
if ( strcmp(myzeile[3],CA)==0 || strcmp(myzeile[3],N) == 0 ||
strcmp(myzeile[3],C) == 0 ||
strcmp(myzeile[3],O) == 0)
{
// Es werden nur die Atome CA, N, C und O beachtet
coor[j] = atof(myzeile[0]);
coor[j+1] = atof(myzeile[1]);
coor[j+2] = atof(myzeile[2]);
j += 3;
}
}
mysql_free_result (ergebnis);
}
resno = j/12;
}
(some code)
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