[jira] [Commented] (RYA-94) Remove from secondary indexes when deleting from DAO

[ASF GitHub Bot (JIRA)]

[ 
https://issues.apache.org/jira/browse/RYA-94?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=15427389#comment-15427389
 ] 

ASF GitHub Bot commented on RYA-94:
---

Github user pujav65 commented on the issue:

https://github.com/apache/incubator-rya/pull/73
  
hey david,
Two things:
1.  Merge to develop not master
2.  Mark the Pull request as WIP if its not ready to be merged


> Remove from secondary indexes when deleting from DAO
> 
>
> Key: RYA-94
> URL: https://issues.apache.org/jira/browse/RYA-94
> Project: Rya
>  Issue Type: Bug
>Reporter: Andrew Smith
>Assignee: David W. Lotts
>Priority: Blocker
>
> Currently, if a delete is made from the DAO, the secondary indexers are not 
> explicitly notified.



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[GitHub] incubator-rya issue #73: RYA-94 Remove from secondary indexes when deleting ...

[pujav65]

Github user pujav65 commented on the issue:

https://github.com/apache/incubator-rya/pull/73
  
hey david,
Two things:
1.  Merge to develop not master
2.  Mark the Pull request as WIP if its not ready to be merged


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[GitHub] incubator-rya pull request #73: Rya 94 rm index

[DLotts]

GitHub user DLotts opened a pull request:

https://github.com/apache/incubator-rya/pull/73

Rya 94 rm index

Not ready for review yet.  More commits to come.

You can merge this pull request into a Git repository by running:

$ git pull https://github.com/DLotts/incubator-rya RYA-94-rm-index

Alternatively you can review and apply these changes as the patch at:

https://github.com/apache/incubator-rya/pull/73.patch

To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:

This closes #73


commit d6635321e4dcd6a29c15e850a065c74f2d946bf9
Author: pujav65 
Date:   2015-12-18T15:52:18Z

RYA-24 issue with hashes and regex queries

commit 8df9ac7680dc26265cc41aa2d3193398660f196a
Author: pujav65 
Date:   2015-12-21T14:10:10Z

RYA-23 exposing triple pattern strategy from rya context

commit faae178c004c2e96b216192b8ee76892b671d44b
Author: pujav65 
Date:   2015-12-21T15:12:30Z

RYA-21 adding input format and sample mappers/reducers

commit 2b30478cdbd0207bfd48d2e2c10c26438fb9b353
Author: Aaron Mihalik 
Date:   2015-12-23T16:23:31Z

RYA-25 Adding Apache-RAT Eclipse Exclusion

commit e530aec63ea99f601ccaa6431029023a5325c94a
Author: pujav65 
Date:   2016-01-04T17:50:43Z

Merge branch 'RYA-24' of https://github.com/pujav65/incubator-rya into 
RYA-24

commit a7d266ea343742921bc5b30ecc276f6297aaf32a
Author: pujav65 
Date:   2016-01-04T18:19:30Z

Merge branch 'RYA-23' of https://github.com/pujav65/incubator-rya into 
RYA-23

commit 4ca2b241f6dd3394e99f7f49476d6216b400994a
Author: pujav65 
Date:   2016-01-04T19:37:47Z

Merge branch 'RYA-21' of https://github.com/pujav65/incubator-rya into 
RYA-21

commit db96c4584815fec6b67f31db2753d12c1bb23f64
Author: pujav65 
Date:   2016-01-04T21:31:24Z

RYA-28 adding additional life cycle dependencies for secondary indices

commit 4b7bd4f4ecc7a2d2e074ef6394452145138ebbca
Author: pujav65 
Date:   2016-01-06T19:01:40Z

RYA-28 fixing build after incomplete check in

commit 22f82c7abdb53cd16a6c6f77cf605cc8fae5de7e
Author: Aaron Mihalik 
Date:   2015-11-22T22:50:19Z

RYA-4 Adding Vagrant Example and Documentation

commit c12f58f46be0aed3c88eff7504d4bfd4e4f295e9
Author: Caleb Meier 
Date:   2016-01-29T16:40:59Z

RYA-32 Improve how metadata and values are written to Accumulo PCJ tables

commit 6cd8aeb71ee28252023965d2acbffc19eb32296b
Author: Aaron Mihalik 
Date:   2016-02-07T18:24:38Z

RYA-32 Adding License Headers

commit 19e2e438c9e6aef2585d72a5696b336b7bd7ab8b
Author: Aaron Mihalik 
Date:   2016-02-07T19:15:27Z

RYA-4 Adding Vagrant Example and Documentation

commit 3157bc466a4faf87814ad9c81166c6f2139fc49c
Author: Kevin Chilton 
Date:   2016-02-14T20:20:15Z

RYA-35 - Added a class that converts BindingSet objects into Strings and 
back again.

commit 6b2944693ac5bc4ef0ea9e067715c63c9b78bf88
Author: Mike Pfaffenberger 
Date:   2016-02-18T14:47:09Z

RYA-37 Bump GeoMesa version to 1.2.0

commit 8db5bbc3aa0256426c1c9ec925a31bf9e177ff3b
Author: Kevin Chilton 
Date:   2016-02-19T22:22:15Z

RYA-41 Fixed a bug where AccumuloIndexSet assumes the first node of a 
ParsedQuery is always a Projection node.

commit 1a3839607d61be7ddd0124f6e50f7c0ae35367c8
Author: Aaron Mihalik 
Date:   2016-02-22T19:39:14Z

Merge branch 'geomesa_version_bump' of 
https://github.com/mpfaffenberger/incubator-rya into develop

commit 39c39429019937284d2e100ce0cffd214ea726e3
Author: AmilaWijayarathna 
Date:   2016-03-02T14:44:47Z

RYA-44 testMilliSecondsNoZone test case fails when running from +0530 time 
zone

commit 188791306474f5d45f9bb42f3f424bc6709c5eb0
Author: Aaron Mihalik 
Date:   2016-03-02T23:37:28Z

RYA-7 Applying Correct License

commit d5202aa52309ab914fb561d73015b22234c0d53f
Author: Aaron Mihalik 
Date:   2016-03-04T02:40:07Z

RYA-45 Pushing apache-rat constraints to submodules

commit c4d44ebae60c1ac3db5ea91d3f05ed9a588cf9b2
Author: pujav65 
Date:   2016-01-13T16:21:52Z

RYA-11 initial implementation of free text for mongo backend

commit efcae829c97e78b122b0d27586dd2a74e5c3
Author: pujav65 
Date:   2016-02-29T20:15:52Z

RYA-34 fixing inference with mongo db

commit 358c13b83dc04887f95afee1c326971602d31647
Author: pujav65 
Date:   2016-03-14T14:55:31Z

RYA-11 fixing compile errors

commit

commit a150595e2184caa57e93e6e1c18c4cac6477e8cb
Author: jej2003 
Date:   2016-03-17T18:04:01Z

update so 

[jira] [Commented] (RYA-149) Pom Modifications after 3.2.10 release

[ASF GitHub Bot (JIRA)]

[ 
https://issues.apache.org/jira/browse/RYA-149?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=15427135#comment-15427135
 ] 

ASF GitHub Bot commented on RYA-149:


Github user pujav65 commented on the issue:

https://github.com/apache/incubator-rya/pull/69
  
looks good.  I won't be able to merge this today, but I don't see why you 
couldn't merge it since this change was already discussed on the dev list.


> Pom Modifications after 3.2.10 release
> --
>
> Key: RYA-149
> URL: https://issues.apache.org/jira/browse/RYA-149
> Project: Rya
>  Issue Type: Improvement
>  Components: build
>Affects Versions: 3.2.10
>Reporter: Aaron Mihalik
>Priority: Trivial
>
> There are a couple changes that we should implement to make the release 
> slightly easier.
> 1. Change the default behavior for the maven release plug: The default 
> behavior should be "deploy" or "deploy-site" but we override it to only be 
> "install".  We should remove the override from the parent pom.
> 2. Change the tag name format to be the project version number:  
> https://maven.apache.org/maven-release/maven-release-plugin/examples/prepare-release.html#Overriding_the_default_tag_name_format
> If there are any other changes I'd like to see, I'll add it to the comments



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[GitHub] incubator-rya issue #69: RYA-149 Updating pom to make the release easier

[pujav65]

Github user pujav65 commented on the issue:

https://github.com/apache/incubator-rya/pull/69
  
looks good.  I won't be able to merge this today, but I don't see why you 
couldn't merge it since this change was already discussed on the dev list.


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[jira] [Assigned] (RYA-156) Add a Pull Request Template

[Andrew Smith (JIRA)]

 [ 
https://issues.apache.org/jira/browse/RYA-156?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
 ]

Andrew Smith reassigned RYA-156:


Assignee: Andrew Smith

> Add a Pull Request Template
> ---
>
> Key: RYA-156
> URL: https://issues.apache.org/jira/browse/RYA-156
> Project: Rya
>  Issue Type: Wish
>  Components: docs
>Reporter: Aaron Mihalik
>Assignee: Andrew Smith
>
> I really like how Andrew described this Pull Request 
> [here|https://github.com/apache/incubator-rya/pull/72]
> This task is to capture this outline and create a "Pull Request 
> [Template|https://github.com/blog/2111-issue-and-pull-request-templates]; for 
> instance, here is the one for 
> [Spark|https://github.com/apache/spark/blob/master/.github/PULL_REQUEST_TEMPLATE]



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[GitHub] incubator-rya issue #72: RYA-133 Fix broken Mongo Secondary Indexers

[isper3at]

Github user isper3at commented on the issue:

https://github.com/apache/incubator-rya/pull/72
  
I already have it templated up in a bookmarklett.  We can actually add 
something to the .git folder so that the template is auto-added to the PR.  
I'll assign the ticket to myself and set it up


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[jira] [Commented] (RYA-133) Mongo Secondary indexers are broken

[ASF GitHub Bot (JIRA)]

[ 
https://issues.apache.org/jira/browse/RYA-133?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=15427101#comment-15427101
 ] 

ASF GitHub Bot commented on RYA-133:


Github user amihalik commented on the issue:

https://github.com/apache/incubator-rya/pull/72
  
No comments on your PR commit, but I really like your description.  I think 
we should do this: [RYA-156 - Add a Pull Request 
Template](https://issues.apache.org/jira/browse/RYA-156)


> Mongo Secondary indexers are broken
> ---
>
> Key: RYA-133
> URL: https://issues.apache.org/jira/browse/RYA-133
> Project: Rya
>  Issue Type: Sub-task
>Reporter: Andrew Smith
>Assignee: Andrew Smith
> Fix For: 3.2.10
>
>
> With the creation of integration tests for mongo support in the rya admin 
> shell, it was discovered that the refactoring of the mongo secondary indexers 
> broke some of the functionality.



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[jira] [Updated] (RYA-156) Add a Pull Request Template

[Aaron Mihalik (JIRA)]

 [ 
https://issues.apache.org/jira/browse/RYA-156?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
 ]

Aaron Mihalik updated RYA-156:
--
Description: 
I really like how Andrew described this Pull Request 
[here|https://github.com/apache/incubator-rya/pull/72]


This task is to capture this outline and create a "Pull Request 
[Template|https://github.com/blog/2111-issue-and-pull-request-templates]; for 
instance, here is the one for 
[Spark|https://github.com/apache/spark/blob/master/.github/PULL_REQUEST_TEMPLATE]

  was:
I really like how Andrew described this Pull Request 
[here|https://github.com/apache/incubator-rya/pull/72]


This task is to capture this outline and create a "Pull Request 
[Template|https://github.com/blog/2111-issue-and-pull-request-templates] " for 
instance, here is 
[Sparks|https://github.com/apache/spark/blob/master/.github/PULL_REQUEST_TEMPLATE]


> Add a Pull Request Template
> ---
>
> Key: RYA-156
> URL: https://issues.apache.org/jira/browse/RYA-156
> Project: Rya
>  Issue Type: Wish
>  Components: docs
>Reporter: Aaron Mihalik
>
> I really like how Andrew described this Pull Request 
> [here|https://github.com/apache/incubator-rya/pull/72]
> This task is to capture this outline and create a "Pull Request 
> [Template|https://github.com/blog/2111-issue-and-pull-request-templates]; for 
> instance, here is the one for 
> [Spark|https://github.com/apache/spark/blob/master/.github/PULL_REQUEST_TEMPLATE]



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[GitHub] incubator-rya issue #72: RYA-133 Fix broken Mongo Secondary Indexers

[amihalik]

Github user amihalik commented on the issue:

https://github.com/apache/incubator-rya/pull/72
  
No comments on your PR commit, but I really like your description.  I think 
we should do this: [RYA-156 - Add a Pull Request 
Template](https://issues.apache.org/jira/browse/RYA-156)


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[GitHub] incubator-rya pull request #72: RYA-133 Fix broken Mongo Secondary Indexers

[isper3at]

Github user isper3at commented on a diff in the pull request:

https://github.com/apache/incubator-rya/pull/72#discussion_r75383666
  
--- Diff: 
extras/indexing/src/main/java/mvm/rya/indexing/FilterFunctionOptimizer.java ---
@@ -101,23 +102,23 @@ public void setConf(final Configuration conf) {
 init = false;
 try {
 init();
-} catch (final NumberFormatException | UnknownHostException e) {
+} catch (final NumberFormatException | IOException e) {
 LOG.error("Unable to update to use new config, falling back to 
the old config.", e);
 init = true;
 }
 }
 
-private synchronized void init() throws NumberFormatException, 
UnknownHostException {
+private synchronized void init() throws NumberFormatException, 
IOException {
 if (!init) {
 if (ConfigUtils.getUseMongo(conf)) {
 try {
 final MongoClient mongoClient = 
MongoConnectorFactory.getMongoClient(conf);
-geoIndexer = new MongoGeoIndexer(mongoClient);
-geoIndexer.setConf(conf);
-freeTextIndexer = new 
MongoFreeTextIndexer(mongoClient);
-freeTextIndexer.setConf(conf);
-temporalIndexer = new 
MongoTemporalIndexer(mongoClient);
-temporalIndexer.setConf(conf);
+geoIndexer = new MongoGeoIndexer();
+((AbstractMongoIndexer) geoIndexer).initIndexer(conf, 
mongoClient);
--- End diff --

that might be a problem in the other initIndexer()  The reason there is a 
seperate initIndexer() function is because init() does things I don't want to 
happen quite yet.


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[jira] [Created] (RYA-156) Add a Pull Request Template

[Aaron Mihalik (JIRA)]

Aaron Mihalik created RYA-156:
-

 Summary: Add a Pull Request Template
 Key: RYA-156
 URL: https://issues.apache.org/jira/browse/RYA-156
 Project: Rya
  Issue Type: Wish
  Components: docs
Reporter: Aaron Mihalik


I really like how Andrew described this Pull Request 
[here|https://github.com/apache/incubator-rya/pull/72]


This task is to capture this outline and create a "Pull Request 
[Template|https://github.com/blog/2111-issue-and-pull-request-templates] " for 
instance, here is 
[Sparks|https://github.com/apache/spark/blob/master/.github/PULL_REQUEST_TEMPLATE]



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[jira] [Commented] (RYA-133) Mongo Secondary indexers are broken

[ASF GitHub Bot (JIRA)]

[ 
https://issues.apache.org/jira/browse/RYA-133?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=15427095#comment-15427095
 ] 

ASF GitHub Bot commented on RYA-133:


Github user DLotts commented on a diff in the pull request:

https://github.com/apache/incubator-rya/pull/72#discussion_r75383276
  
--- Diff: 
extras/indexing/src/main/java/mvm/rya/indexing/FilterFunctionOptimizer.java ---
@@ -101,23 +102,23 @@ public void setConf(final Configuration conf) {
 init = false;
 try {
 init();
-} catch (final NumberFormatException | UnknownHostException e) {
+} catch (final NumberFormatException | IOException e) {
 LOG.error("Unable to update to use new config, falling back to 
the old config.", e);
 init = true;
 }
 }
 
-private synchronized void init() throws NumberFormatException, 
UnknownHostException {
+private synchronized void init() throws NumberFormatException, 
IOException {
 if (!init) {
 if (ConfigUtils.getUseMongo(conf)) {
 try {
 final MongoClient mongoClient = 
MongoConnectorFactory.getMongoClient(conf);
-geoIndexer = new MongoGeoIndexer(mongoClient);
-geoIndexer.setConf(conf);
-freeTextIndexer = new 
MongoFreeTextIndexer(mongoClient);
-freeTextIndexer.setConf(conf);
-temporalIndexer = new 
MongoTemporalIndexer(mongoClient);
-temporalIndexer.setConf(conf);
+geoIndexer = new MongoGeoIndexer();
+((AbstractMongoIndexer) geoIndexer).initIndexer(conf, 
mongoClient);
--- End diff --

GeoIndexer has null fields: storageStrategy , predicates.  The 
implementation init is not called?  In the code I see from develop, init does 
this 
predicates = ConfigUtils.getGeoPredicates(conf);  
storageStrategy = ...


> Mongo Secondary indexers are broken
> ---
>
> Key: RYA-133
> URL: https://issues.apache.org/jira/browse/RYA-133
> Project: Rya
>  Issue Type: Sub-task
>Reporter: Andrew Smith
>Assignee: Andrew Smith
> Fix For: 3.2.10
>
>
> With the creation of integration tests for mongo support in the rya admin 
> shell, it was discovered that the refactoring of the mongo secondary indexers 
> broke some of the functionality.



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[GitHub] incubator-rya pull request #72: RYA-133 Fix broken Mongo Secondary Indexers

[DLotts]

Github user DLotts commented on a diff in the pull request:

https://github.com/apache/incubator-rya/pull/72#discussion_r75383276
  
--- Diff: 
extras/indexing/src/main/java/mvm/rya/indexing/FilterFunctionOptimizer.java ---
@@ -101,23 +102,23 @@ public void setConf(final Configuration conf) {
 init = false;
 try {
 init();
-} catch (final NumberFormatException | UnknownHostException e) {
+} catch (final NumberFormatException | IOException e) {
 LOG.error("Unable to update to use new config, falling back to 
the old config.", e);
 init = true;
 }
 }
 
-private synchronized void init() throws NumberFormatException, 
UnknownHostException {
+private synchronized void init() throws NumberFormatException, 
IOException {
 if (!init) {
 if (ConfigUtils.getUseMongo(conf)) {
 try {
 final MongoClient mongoClient = 
MongoConnectorFactory.getMongoClient(conf);
-geoIndexer = new MongoGeoIndexer(mongoClient);
-geoIndexer.setConf(conf);
-freeTextIndexer = new 
MongoFreeTextIndexer(mongoClient);
-freeTextIndexer.setConf(conf);
-temporalIndexer = new 
MongoTemporalIndexer(mongoClient);
-temporalIndexer.setConf(conf);
+geoIndexer = new MongoGeoIndexer();
+((AbstractMongoIndexer) geoIndexer).initIndexer(conf, 
mongoClient);
--- End diff --

GeoIndexer has null fields: storageStrategy , predicates.  The 
implementation init is not called?  In the code I see from develop, init does 
this 
predicates = ConfigUtils.getGeoPredicates(conf);  
storageStrategy = ...


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[jira] [Commented] (RYA-133) Mongo Secondary indexers are broken

[ASF GitHub Bot (JIRA)]

[ 
https://issues.apache.org/jira/browse/RYA-133?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=15427065#comment-15427065
 ] 

ASF GitHub Bot commented on RYA-133:


GitHub user isper3at opened a pull request:

https://github.com/apache/incubator-rya/pull/72

RYA-133 Fix broken Mongo Secondary Indexers

## Description
>What changed?
The secondary indexers need an empty constructor.  Moved back to an init() 
call instead, leave empty constructor open for the reflexive calls.

### Links
[Jira](https://issues.apache.org/jira/browse/RYA-133)

### Checklist
- [ ] Code Review
- [ x] Squash commits

 People To Review
@dlotts

You can merge this pull request into a Git repository by running:

$ git pull https://github.com/isper3at/incubator-rya RYA-133_MongoFix

Alternatively you can review and apply these changes as the patch at:

https://github.com/apache/incubator-rya/pull/72.patch

To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:

This closes #72


commit 5845536b5e0c8036658751010874879b308049b4
Author: isper3at 
Date:   2016-07-28T17:02:35Z

RYA-133 Fix broken Mongo Secondary Indexers

The refactoring of the mongo secondary indexers broke some functionality.
The reflective way the indexers are created requires an empty
constructor.  The refactor was altered to allow the changes to persist
while gaining the empty constructor.




> Mongo Secondary indexers are broken
> ---
>
> Key: RYA-133
> URL: https://issues.apache.org/jira/browse/RYA-133
> Project: Rya
>  Issue Type: Sub-task
>Reporter: Andrew Smith
>Assignee: Andrew Smith
> Fix For: 3.2.10
>
>
> With the creation of integration tests for mongo support in the rya admin 
> shell, it was discovered that the refactoring of the mongo secondary indexers 
> broke some of the functionality.



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[GitHub] incubator-rya pull request #68: [WIP] RYA-151 Rya Query benchmark tool imple...

[kchilton2]

Github user kchilton2 commented on a diff in the pull request:

https://github.com/apache/incubator-rya/pull/68#discussion_r75374195
  
--- Diff: 
extras/rya.benchmark/src/test/java/org/apache/rya/benchmark/query/BenchmarkQueriesReaderIT.java
 ---
@@ -0,0 +1,55 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+package org.apache.rya.benchmark.query;
+
+import static org.junit.Assert.assertEquals;
+
+import java.io.ByteArrayInputStream;
+import java.io.InputStream;
+
+import javax.xml.bind.JAXBException;
+
+import 
org.apache.rya.benchmark.query.QueryBenchmark.BenchmarkQueriesReader;
+import org.junit.Test;
+import org.xml.sax.SAXException;
+
+import com.google.common.base.Charsets;
+
+/**
+ * Tests the methods of {@link BenchmarkQueriesReader}.
+ */
+public class BenchmarkQueriesReaderIT {
+
+@Test
+public void load() throws JAXBException, SAXException {
+// Unmarshal some XML.
+final String xml =
+"\n" +
+"\n" +
+"" +
--- End diff --

So the two parameters that I was planning on having you configure are:
1. What SPARQL query to execute.
2. The number of results to read from the query.


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[jira] [Commented] (RYA-151) Rya Test Bed

[ASF GitHub Bot (JIRA)]

[ 
https://issues.apache.org/jira/browse/RYA-151?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=15426900#comment-15426900
 ] 

ASF GitHub Bot commented on RYA-151:


Github user amihalik commented on a diff in the pull request:

https://github.com/apache/incubator-rya/pull/68#discussion_r75355985
  
--- Diff: 
extras/rya.benchmark/src/test/java/org/apache/rya/benchmark/query/BenchmarkQueriesReaderIT.java
 ---
@@ -0,0 +1,55 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+package org.apache.rya.benchmark.query;
+
+import static org.junit.Assert.assertEquals;
+
+import java.io.ByteArrayInputStream;
+import java.io.InputStream;
+
+import javax.xml.bind.JAXBException;
+
+import 
org.apache.rya.benchmark.query.QueryBenchmark.BenchmarkQueriesReader;
+import org.junit.Test;
+import org.xml.sax.SAXException;
+
+import com.google.common.base.Charsets;
+
+/**
+ * Tests the methods of {@link BenchmarkQueriesReader}.
+ */
+public class BenchmarkQueriesReaderIT {
+
+@Test
+public void load() throws JAXBException, SAXException {
+// Unmarshal some XML.
+final String xml =
+"\n" +
+"\n" +
+"" +
--- End diff --

We should have query level granularity for the benchmark (i.e. we should 
have timing results for each query in the benchmark), so that we can have 
pretty graphs like this:


![image](https://cloud.githubusercontent.com/assets/4710489/17784519/c838a508-654a-11e6-8d65-e4043177dc6a.png)


Also, it would be nice if the benchmark printed out the name of the query 
for the results.  So we can have a table like this:


![image](https://cloud.githubusercontent.com/assets/4710489/17784596/14630158-654b-11e6-8dbb-23325619d3d7.png)

(Note: I ripped off these graphics from Roshan's Paper)


> Rya Test Bed
> 
>
> Key: RYA-151
> URL: https://issues.apache.org/jira/browse/RYA-151
> Project: Rya
>  Issue Type: Wish
>  Components: clients, dao
>Reporter: Puja Valiyil 
>Assignee: Kevin Chilton
>
> It would be nice if there was a test bed checked in with Rya that could be 
> used for benchmark testing.  This test bed should include options for  
> uploading data to a rya instance, then issuing some benchmark queries (and 
> timing them in a way that everyone agrees is sound).  It could be a command 
> line tool.  It should be dao agnostic (work on either mongo, accumulo, etc.). 
>  



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[GitHub] incubator-rya pull request #68: [WIP] RYA-151 Rya Query benchmark tool imple...

[amihalik]

Github user amihalik commented on a diff in the pull request:

https://github.com/apache/incubator-rya/pull/68#discussion_r75355985
  
--- Diff: 
extras/rya.benchmark/src/test/java/org/apache/rya/benchmark/query/BenchmarkQueriesReaderIT.java
 ---
@@ -0,0 +1,55 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+package org.apache.rya.benchmark.query;
+
+import static org.junit.Assert.assertEquals;
+
+import java.io.ByteArrayInputStream;
+import java.io.InputStream;
+
+import javax.xml.bind.JAXBException;
+
+import 
org.apache.rya.benchmark.query.QueryBenchmark.BenchmarkQueriesReader;
+import org.junit.Test;
+import org.xml.sax.SAXException;
+
+import com.google.common.base.Charsets;
+
+/**
+ * Tests the methods of {@link BenchmarkQueriesReader}.
+ */
+public class BenchmarkQueriesReaderIT {
+
+@Test
+public void load() throws JAXBException, SAXException {
+// Unmarshal some XML.
+final String xml =
+"\n" +
+"\n" +
+"" +
--- End diff --

We should have query level granularity for the benchmark (i.e. we should 
have timing results for each query in the benchmark), so that we can have 
pretty graphs like this:


![image](https://cloud.githubusercontent.com/assets/4710489/17784519/c838a508-654a-11e6-8d65-e4043177dc6a.png)


Also, it would be nice if the benchmark printed out the name of the query 
for the results.  So we can have a table like this:


![image](https://cloud.githubusercontent.com/assets/4710489/17784596/14630158-654b-11e6-8dbb-23325619d3d7.png)

(Note: I ripped off these graphics from Roshan's Paper)


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[jira] [Commented] (RYA-151) Rya Test Bed

[ASF GitHub Bot (JIRA)]

[ 
https://issues.apache.org/jira/browse/RYA-151?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=15426879#comment-15426879
 ] 

ASF GitHub Bot commented on RYA-151:


Github user kchilton2 commented on a diff in the pull request:

https://github.com/apache/incubator-rya/pull/68#discussion_r75354404
  
--- Diff: 
extras/rya.benchmark/src/test/java/org/apache/rya/benchmark/query/BenchmarkQueriesReaderIT.java
 ---
@@ -0,0 +1,55 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+package org.apache.rya.benchmark.query;
+
+import static org.junit.Assert.assertEquals;
+
+import java.io.ByteArrayInputStream;
+import java.io.InputStream;
+
+import javax.xml.bind.JAXBException;
+
+import 
org.apache.rya.benchmark.query.QueryBenchmark.BenchmarkQueriesReader;
+import org.junit.Test;
+import org.xml.sax.SAXException;
+
+import com.google.common.base.Charsets;
+
+/**
+ * Tests the methods of {@link BenchmarkQueriesReader}.
+ */
+public class BenchmarkQueriesReaderIT {
+
+@Test
+public void load() throws JAXBException, SAXException {
+// Unmarshal some XML.
+final String xml =
+"\n" +
+"\n" +
+"" +
--- End diff --

What do you want to do with those attributes? If they aren't used within 
the benchmark, that sort of information could easily just be XML comments.

{code}



   

{code}


> Rya Test Bed
> 
>
> Key: RYA-151
> URL: https://issues.apache.org/jira/browse/RYA-151
> Project: Rya
>  Issue Type: Wish
>  Components: clients, dao
>Reporter: Puja Valiyil 
>Assignee: Kevin Chilton
>
> It would be nice if there was a test bed checked in with Rya that could be 
> used for benchmark testing.  This test bed should include options for  
> uploading data to a rya instance, then issuing some benchmark queries (and 
> timing them in a way that everyone agrees is sound).  It could be a command 
> line tool.  It should be dao agnostic (work on either mongo, accumulo, etc.). 
>  



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[GitHub] incubator-rya pull request #68: [WIP] RYA-151 Rya Query benchmark tool imple...

[kchilton2]

Github user kchilton2 commented on a diff in the pull request:

https://github.com/apache/incubator-rya/pull/68#discussion_r75354404
  
--- Diff: 
extras/rya.benchmark/src/test/java/org/apache/rya/benchmark/query/BenchmarkQueriesReaderIT.java
 ---
@@ -0,0 +1,55 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+package org.apache.rya.benchmark.query;
+
+import static org.junit.Assert.assertEquals;
+
+import java.io.ByteArrayInputStream;
+import java.io.InputStream;
+
+import javax.xml.bind.JAXBException;
+
+import 
org.apache.rya.benchmark.query.QueryBenchmark.BenchmarkQueriesReader;
+import org.junit.Test;
+import org.xml.sax.SAXException;
+
+import com.google.common.base.Charsets;
+
+/**
+ * Tests the methods of {@link BenchmarkQueriesReader}.
+ */
+public class BenchmarkQueriesReaderIT {
+
+@Test
+public void load() throws JAXBException, SAXException {
+// Unmarshal some XML.
+final String xml =
+"\n" +
+"\n" +
+"" +
--- End diff --

What do you want to do with those attributes? If they aren't used within 
the benchmark, that sort of information could easily just be XML comments.

{code}



   

{code}


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[jira] [Commented] (RYA-109) Add Spark support

[ASF GitHub Bot (JIRA)]

[ 
https://issues.apache.org/jira/browse/RYA-109?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=15426768#comment-15426768
 ] 

ASF GitHub Bot commented on RYA-109:


GitHub user Ejgood21 opened a pull request:

https://github.com/apache/incubator-rya/pull/71

[WIP] RYA-109 Feature/spark graph x



You can merge this pull request into a Git repository by running:

$ git pull https://github.com/Ejgood21/incubator-rya feature/sparkGraphX

Alternatively you can review and apply these changes as the patch at:

https://github.com/apache/incubator-rya/pull/71.patch

To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:

This closes #71


commit 621cce8164e8e5322bb667143d363381bf8df2c2
Author: Evan Good 
Date:   2016-08-18T15:15:45Z

initial spark support




> Add Spark support
> -
>
> Key: RYA-109
> URL: https://issues.apache.org/jira/browse/RYA-109
> Project: Rya
>  Issue Type: New Feature
>  Components: clients
>Affects Versions: 3.2.10
>Reporter: Andrew Smith
>Assignee: Evan Good
> Fix For: 3.2.10
>
>




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[GitHub] incubator-rya pull request #71: [WIP] RYA-109 Feature/spark graph x

[Ejgood21]

GitHub user Ejgood21 opened a pull request:

https://github.com/apache/incubator-rya/pull/71

[WIP] RYA-109 Feature/spark graph x



You can merge this pull request into a Git repository by running:

$ git pull https://github.com/Ejgood21/incubator-rya feature/sparkGraphX

Alternatively you can review and apply these changes as the patch at:

https://github.com/apache/incubator-rya/pull/71.patch

To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:

This closes #71


commit 621cce8164e8e5322bb667143d363381bf8df2c2
Author: Evan Good 
Date:   2016-08-18T15:15:45Z

initial spark support




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[jira] [Commented] (RYA-76) Organize and document MapReduce support

[ASF GitHub Bot (JIRA)]

[ 
https://issues.apache.org/jira/browse/RYA-76?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=15426726#comment-15426726
 ] 

ASF GitHub Bot commented on RYA-76:
---

Github user jessehatfield closed the pull request at:

https://github.com/apache/incubator-rya/pull/55


> Organize and document MapReduce support
> ---
>
> Key: RYA-76
> URL: https://issues.apache.org/jira/browse/RYA-76
> Project: Rya
>  Issue Type: Improvement
>Reporter: Jesse Hatfield
>Assignee: Jesse Hatfield
>
> Rya has some MapReduce support (e.g. a Writable, an InputFormat -- RYA-21), 
> but this could be more clearly structured and documented.



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[GitHub] incubator-rya pull request #55: RYA-76 Consolidated MapReduce API and applic...

[jessehatfield]

Github user jessehatfield closed the pull request at:

https://github.com/apache/incubator-rya/pull/55


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[jira] [Commented] (RYA-109) Add Spark support

[ASF GitHub Bot (JIRA)]

[ 
https://issues.apache.org/jira/browse/RYA-109?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=15426654#comment-15426654
 ] 

ASF GitHub Bot commented on RYA-109:


Github user amihalik commented on the issue:

https://github.com/apache/incubator-rya/pull/70
  
Something is screwy with Jesse's commit that you pulled in.  The commit you 
have has hash   1855213 and the one in the apache/develop branch has 01489ef.  
This needs to be fixed before we can pull in your PR, and it's probably easier 
to fix now rather than later.  Let me know if you need any assistance with this 
and I can walk you through it.


> Add Spark support
> -
>
> Key: RYA-109
> URL: https://issues.apache.org/jira/browse/RYA-109
> Project: Rya
>  Issue Type: New Feature
>  Components: clients
>Affects Versions: 3.2.10
>Reporter: Andrew Smith
>Assignee: Evan Good
> Fix For: 3.2.10
>
>




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[GitHub] incubator-rya issue #70: [WIP] RYA-109 Add Spark Support

[amihalik]

Github user amihalik commented on the issue:

https://github.com/apache/incubator-rya/pull/70
  
Something is screwy with Jesse's commit that you pulled in.  The commit you 
have has hash   1855213 and the one in the apache/develop branch has 01489ef.  
This needs to be fixed before we can pull in your PR, and it's probably easier 
to fix now rather than later.  Let me know if you need any assistance with this 
and I can walk you through it.


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[GitHub] incubator-rya pull request #70: Feature/spark

[Ejgood21]

GitHub user Ejgood21 opened a pull request:

https://github.com/apache/incubator-rya/pull/70

Feature/spark

Spark GraphX Support - WIP

You can merge this pull request into a Git repository by running:

$ git pull https://github.com/Ejgood21/incubator-rya feature/spark

Alternatively you can review and apply these changes as the patch at:

https://github.com/apache/incubator-rya/pull/70.patch

To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:

This closes #70


commit 18552132e8bfecec33b57aae302e25d93c28e7e3
Author: Jesse Hatfield 
Date:   2016-06-30T19:50:08Z

Consolidated MapReduce API and applications into toplevel project.

Changes include:
- Made RdfFileInputFormat threaded, allowing it to handle all RDF input
- Added entity-centric indexing to RyaOutputFormat
- Added methods for using Rya input and output formats to 
AbstractAccumuloMRTool (renamed setupInputFormat to setupAccumuloInput since 
there are now multiple input options)
- Removed *NullIndexer classes, which were only used in RyaOutputFormat
- Removed StatementWritable, changed to RyaStatementWritable where 
applicable (for consistency)
- Fixed hashCode/compareTo/equals methods in RyaStatementWritable, RyaType, 
and RyaURI
- Minor renaming and repackaging (standalone tools go in "tools", 
"fileinput" and "utils" removed)
- Minor tweaks to AccumuloHDFSFileInputFormat, which seemed to be broken 
with Accumulo 1.6
- Documented code and added a MapReduce page to the manual
- Added "examples" package with one example
- Removed RyaStatementMapper and RyaStatementReducer: these simply insert 
records into Rya.
  This functionality can be achieved with RyaOutputFormat and the default 
mapper/reducer,
  so these two classes seem redundant.
- Removed BulkNtripsInputTool, BulkNtripsInputToolIndexing, 
RdfFileInputByLineTool,
  and RyaBatchWriterInputTool: Fixes to RdfFileInputFormat now allow 
RdfFileInputTool
  to now handle all the file input use cases (configurable secondary 
indexers, handles
  any format, scales), rendering the other file import tools redundant. 
(Previously, all
  five tools had largely overlapping but subtly different behavior.)

commit dd727af8d6d97f273ca168637a15f02f5eb1a605
Author: Evan Good 
Date:   2016-08-18T15:15:45Z

initial spark support




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[GitHub] incubator-rya pull request #67: Rya 101 and 102 Mongo Rya example fails to i...

[DLotts]

Github user DLotts commented on a diff in the pull request:

https://github.com/apache/incubator-rya/pull/67#discussion_r75326137
  
--- Diff: 
dao/mongodb.rya/src/main/java/mvm/rya/mongodb/MongoConnectorFactory.java ---
@@ -41,26 +47,77 @@
  * @param conf The {@link Configuration} defining how to construct the 
MongoClient.
  * @return A {@link MongoClient}.  This client is lazy loaded and the 
same one
  * is used throughout the lifecycle of the application.
- * @throws NumberFormatException - Thrown if the configured port is 
not a valid number
- * @throws UnknownHostException - The configured host cannot be found.
+ * @throws IOException - if MongodForTestsFactory constructor has an 
io exception.
+ * @throws ConfigurationRuntimeException - Thrown if the configured 
server, port, user, or others are missing.
+ * @throws UnknownHostException - if MongoDB host name is not found.
  */
-public static synchronized MongoClient getMongoClient(final 
Configuration conf) throws NumberFormatException, UnknownHostException {
-if(mongoClient == null) {
-final String host = 
conf.get(MongoDBRdfConfiguration.MONGO_INSTANCE);
-final int port = 
Integer.parseInt(conf.get(MongoDBRdfConfiguration.MONGO_INSTANCE_PORT));
-final ServerAddress server = new ServerAddress(host, port);
-
-//check for authentication credentials
-if (conf.get(MongoDBRdfConfiguration.MONGO_USER) != null) {
-final String username = 
conf.get(MongoDBRdfConfiguration.MONGO_USER);
-final String dbName = 
conf.get(MongoDBRdfConfiguration.MONGO_DB_NAME);
-final char[] pswd = 
conf.get(MongoDBRdfConfiguration.MONGO_USER_PASSWORD).toCharArray();
-final MongoCredential cred = 
MongoCredential.createCredential(username, dbName, pswd);
-mongoClient = new MongoClient(server, Arrays.asList(cred));
+public static synchronized MongoClient getMongoClient(final 
Configuration conf)
+throws ConfigurationRuntimeException, MongoException {
+if (mongoClient == null) {
+// The singleton client has not yet created, is it a test/mock 
instance, or a service?
+if (conf.getBoolean(MongoDBRdfConfiguration.USE_TEST_MONGO, 
false)) {
--- End diff --

Private methods called from this method, correct?  Great idea.


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[jira] [Commented] (RYA-149) Pom Modifications after 3.2.10 release

[ASF GitHub Bot (JIRA)]

[ 
https://issues.apache.org/jira/browse/RYA-149?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=15426467#comment-15426467
 ] 

ASF GitHub Bot commented on RYA-149:


GitHub user amihalik opened a pull request:

https://github.com/apache/incubator-rya/pull/69

RYA-149 Updating pom to make the release easier



You can merge this pull request into a Git repository by running:

$ git pull https://github.com/amihalik/incubator-rya RYA-149

Alternatively you can review and apply these changes as the patch at:

https://github.com/apache/incubator-rya/pull/69.patch

To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:

This closes #69


commit 134554bd4073aa1629f33c96994b41ab75267c32
Author: Aaron Mihalik 
Date:   2016-08-18T13:29:31Z

RYA-149 Updating pom to make the release easier




> Pom Modifications after 3.2.10 release
> --
>
> Key: RYA-149
> URL: https://issues.apache.org/jira/browse/RYA-149
> Project: Rya
>  Issue Type: Improvement
>  Components: build
>Affects Versions: 3.2.10
>Reporter: Aaron Mihalik
>Priority: Trivial
>
> There are a couple changes that we should implement to make the release 
> slightly easier.
> 1. Change the default behavior for the maven release plug: The default 
> behavior should be "deploy" or "deploy-site" but we override it to only be 
> "install".  We should remove the override from the parent pom.
> 2. Change the tag name format to be the project version number:  
> https://maven.apache.org/maven-release/maven-release-plugin/examples/prepare-release.html#Overriding_the_default_tag_name_format
> If there are any other changes I'd like to see, I'll add it to the comments



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[GitHub] incubator-rya pull request #69: RYA-149 Updating pom to make the release eas...

[amihalik]

GitHub user amihalik opened a pull request:

https://github.com/apache/incubator-rya/pull/69

RYA-149 Updating pom to make the release easier



You can merge this pull request into a Git repository by running:

$ git pull https://github.com/amihalik/incubator-rya RYA-149

Alternatively you can review and apply these changes as the patch at:

https://github.com/apache/incubator-rya/pull/69.patch

To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:

This closes #69


commit 134554bd4073aa1629f33c96994b41ab75267c32
Author: Aaron Mihalik 
Date:   2016-08-18T13:29:31Z

RYA-149 Updating pom to make the release easier




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[jira] [Commented] (RYA-151) Rya Test Bed

[ASF GitHub Bot (JIRA)]

[ 
https://issues.apache.org/jira/browse/RYA-151?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=15426397#comment-15426397
 ] 

ASF GitHub Bot commented on RYA-151:


Github user amihalik commented on a diff in the pull request:

https://github.com/apache/incubator-rya/pull/68#discussion_r75303476
  
--- Diff: 
extras/rya.benchmark/src/test/java/org/apache/rya/benchmark/query/BenchmarkQueriesReaderIT.java
 ---
@@ -0,0 +1,55 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+package org.apache.rya.benchmark.query;
+
+import static org.junit.Assert.assertEquals;
+
+import java.io.ByteArrayInputStream;
+import java.io.InputStream;
+
+import javax.xml.bind.JAXBException;
+
+import 
org.apache.rya.benchmark.query.QueryBenchmark.BenchmarkQueriesReader;
+import org.junit.Test;
+import org.xml.sax.SAXException;
+
+import com.google.common.base.Charsets;
+
+/**
+ * Tests the methods of {@link BenchmarkQueriesReader}.
+ */
+public class BenchmarkQueriesReaderIT {
+
+@Test
+public void load() throws JAXBException, SAXException {
+// Unmarshal some XML.
+final String xml =
+"\n" +
+"\n" +
+"" +
--- End diff --

Can we add attributes to this?  for instance

```xml

   


```


> Rya Test Bed
> 
>
> Key: RYA-151
> URL: https://issues.apache.org/jira/browse/RYA-151
> Project: Rya
>  Issue Type: Wish
>  Components: clients, dao
>Reporter: Puja Valiyil 
>Assignee: Kevin Chilton
>
> It would be nice if there was a test bed checked in with Rya that could be 
> used for benchmark testing.  This test bed should include options for  
> uploading data to a rya instance, then issuing some benchmark queries (and 
> timing them in a way that everyone agrees is sound).  It could be a command 
> line tool.  It should be dao agnostic (work on either mongo, accumulo, etc.). 
>  



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[GitHub] incubator-rya pull request #68: [WIP] RYA-151 Rya Query benchmark tool imple...

[amihalik]

Github user amihalik commented on a diff in the pull request:

https://github.com/apache/incubator-rya/pull/68#discussion_r75303476
  
--- Diff: 
extras/rya.benchmark/src/test/java/org/apache/rya/benchmark/query/BenchmarkQueriesReaderIT.java
 ---
@@ -0,0 +1,55 @@
+/**
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+package org.apache.rya.benchmark.query;
+
+import static org.junit.Assert.assertEquals;
+
+import java.io.ByteArrayInputStream;
+import java.io.InputStream;
+
+import javax.xml.bind.JAXBException;
+
+import 
org.apache.rya.benchmark.query.QueryBenchmark.BenchmarkQueriesReader;
+import org.junit.Test;
+import org.xml.sax.SAXException;
+
+import com.google.common.base.Charsets;
+
+/**
+ * Tests the methods of {@link BenchmarkQueriesReader}.
+ */
+public class BenchmarkQueriesReaderIT {
+
+@Test
+public void load() throws JAXBException, SAXException {
+// Unmarshal some XML.
+final String xml =
+"\n" +
+"\n" +
+"" +
--- End diff --

Can we add attributes to this?  for instance

```xml

   


```


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[jira] [Commented] (RYA-105) Fluo Integration with Rya

[ASF GitHub Bot (JIRA)]

[ 
https://issues.apache.org/jira/browse/RYA-105?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=15426381#comment-15426381
 ] 

ASF GitHub Bot commented on RYA-105:


Github user pujav65 commented on the issue:

https://github.com/apache/incubator-rya/pull/58
  
@meiercaleb can you close this pull request?


> Fluo Integration with Rya
> -
>
> Key: RYA-105
> URL: https://issues.apache.org/jira/browse/RYA-105
> Project: Rya
>  Issue Type: Bug
>  Components: dao
>Affects Versions: 3.2.10
>Reporter: Caleb Meier
>Assignee: Caleb Meier
> Fix For: 3.2.10
>
>
> The Fluo table for incrementally updating precomputed joins is not fully 
> integrated with Rya.  The PrecomputedJoinIndexer (which is an implementation 
> of the AccumuloIndexer interface) is not being added to the list of indexers 
> when the PCJ flag is set.  So the DAO is never adding to Fluo.



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[GitHub] incubator-rya issue #58: RYA-105: Fluo Integration

[pujav65]

Github user pujav65 commented on the issue:

https://github.com/apache/incubator-rya/pull/58
  
@meiercaleb can you close this pull request?


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[GitHub] incubator-rya pull request #46: Adding Visibilties to Rya Web

[amihalik]

Github user amihalik closed the pull request at:

https://github.com/apache/incubator-rya/pull/46


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[jira] [Commented] (RYA-130) Rya Mongo Fail on Multi Bindingset Joins

[ASF GitHub Bot (JIRA)]

[ 
https://issues.apache.org/jira/browse/RYA-130?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=15426369#comment-15426369
 ] 

ASF GitHub Bot commented on RYA-130:


Github user pujav65 commented on the issue:

https://github.com/apache/incubator-rya/pull/57
  
@amihalik can you close this pull request?


> Rya Mongo Fail on Multi Bindingset Joins
> 
>
> Key: RYA-130
> URL: https://issues.apache.org/jira/browse/RYA-130
> Project: Rya
>  Issue Type: Bug
>  Components: dao
>Affects Versions: 3.2.9
>Reporter: Aaron Mihalik
>Assignee: Aaron Mihalik
>
> Rya Mongo fails on a fairly straightforward query:
> {code}
> DATA = 
>  .
>  .
>  .
> QUERY = 
>   select ?s ?foo where { 
>   ?s  ?foo . 
>   ?s   }
> {code}
> This is a bug in how Mongo Rya solves joins.  The first Statement Pattern 
> will return multiple binding sets, and try to join it with a single 
> statement.  The Mongo Rya Query Engine can't handle this case.
> Full Code at: 
> https://gist.github.com/amihalik/61cf870650b7443389e7be7600f8502c



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[GitHub] incubator-rya pull request #57: RYA-130 Fixed Rya Mongo Multi Binding Set Jo...

[amihalik]

Github user amihalik closed the pull request at:

https://github.com/apache/incubator-rya/pull/57


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[GitHub] incubator-rya issue #57: RYA-130 Fixed Rya Mongo Multi Binding Set Join

[pujav65]

Github user pujav65 commented on the issue:

https://github.com/apache/incubator-rya/pull/57
  
@amihalik can you close this pull request?


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[GitHub] incubator-rya issue #55: RYA-76 Consolidated MapReduce API and applications ...

[pujav65]

Github user pujav65 commented on the issue:

https://github.com/apache/incubator-rya/pull/55
  
@jessehatfield can you please close this pull request?


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