[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 --- Comment #27 from Fedora Update System --- FEDORA-EPEL-2020-bd011d5c00 has been pushed to the Fedora EPEL 7 stable repository. If problem still persists, please make note of it in this bug report. -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 --- Comment #26 from Fedora Update System --- FEDORA-EPEL-2020-c2a178362b has been pushed to the Fedora EPEL 8 stable repository. If problem still persists, please make note of it in this bug report. -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 --- Comment #25 from Fedora Update System --- FEDORA-2020-c540172327 has been pushed to the Fedora 30 stable repository. If problem still persists, please make note of it in this bug report. -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 --- Comment #24 from Fedora Update System --- FEDORA-2020-a2ce0fa73b has been pushed to the Fedora 32 stable repository. If problem still persists, please make note of it in this bug report. -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 Fedora Update System changed: What|Removed |Added Status|ON_QA |CLOSED Resolution|--- |ERRATA Last Closed||2020-05-16 03:10:36 --- Comment #23 from Fedora Update System --- FEDORA-2020-fbd101aa06 has been pushed to the Fedora 31 stable repository. If problem still persists, please make note of it in this bug report. -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 --- Comment #22 from Fedora Update System --- FEDORA-EPEL-2020-bd011d5c00 has been pushed to the Fedora EPEL 7 testing repository. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2020-bd011d5c00 See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates. -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 --- Comment #21 from Fedora Update System --- FEDORA-EPEL-2020-c2a178362b has been pushed to the Fedora EPEL 8 testing repository. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2020-c2a178362b See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates. -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 --- Comment #20 from Fedora Update System --- FEDORA-2020-fbd101aa06 has been pushed to the Fedora 31 testing repository. In short time you'll be able to install the update with the following command: `sudo dnf install --enablerepo=updates-testing --advisory=FEDORA-2020-fbd101aa06 \*` You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2020-fbd101aa06 See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates. -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 --- Comment #19 from Fedora Update System --- FEDORA-2020-c540172327 has been pushed to the Fedora 30 testing repository. In short time you'll be able to install the update with the following command: `sudo dnf install --enablerepo=updates-testing --advisory=FEDORA-2020-c540172327 \*` You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2020-c540172327 See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates. -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 Fedora Update System changed: What|Removed |Added Status|MODIFIED|ON_QA --- Comment #18 from Fedora Update System --- FEDORA-2020-a2ce0fa73b has been pushed to the Fedora 32 testing repository. In short time you'll be able to install the update with the following command: `sudo dnf install --enablerepo=updates-testing --advisory=FEDORA-2020-a2ce0fa73b \*` You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2020-a2ce0fa73b See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates. -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 --- Comment #17 from Fedora Update System --- FEDORA-EPEL-2020-bd011d5c00 has been submitted as an update to Fedora EPEL 7. https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2020-bd011d5c00 -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 --- Comment #16 from Fedora Update System --- FEDORA-2020-c540172327 has been submitted as an update to Fedora 30. https://bodhi.fedoraproject.org/updates/FEDORA-2020-c540172327 -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 --- Comment #15 from Fedora Update System --- FEDORA-EPEL-2020-c2a178362b has been submitted as an update to Fedora EPEL 8. https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2020-c2a178362b --- Comment #15 from Fedora Update System --- FEDORA-2020-a2ce0fa73b has been submitted as an update to Fedora 32. https://bodhi.fedoraproject.org/updates/FEDORA-2020-a2ce0fa73b -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 --- Comment #15 from Fedora Update System --- FEDORA-EPEL-2020-c2a178362b has been submitted as an update to Fedora EPEL 8. https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2020-c2a178362b -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 Jun Aruga changed: What|Removed |Added Status|NEW |MODIFIED Fixed In Version||bowtie2-2.4.1-1.fc33 -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 --- Comment #13 from Gwyn Ciesla --- (fedscm-admin): The Pagure repository was created at https://src.fedoraproject.org/rpms/bowtie2 -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 --- Comment #12 from Jun Aruga --- Hi David, Thanks for your review! I removed the 'Requires: python3', and update above Spec and SRPM URLs, and confirmed the /usr/bin/python3 requirement is still exists. ``` sh-5.0# rpm -qR bowtie2 /usr/bin/perl /usr/bin/python3 ``` You might have to change this ticket's status from NEW to POST or ASSIGNED for the repository to be created. Now I am requesting bowtie2 dist-git repository. And we will see the result. ``` $ fedpkg request-repo bowtie2 1824348 https://pagure.io/releng/fedora-scm-requests/issue/24782 ``` -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 david08...@gmail.com changed: What|Removed |Added Flags||fedora-review+ --- Comment #11 from david08...@gmail.com --- There is still an explicit 'Requires: python3' in line 16. This isn't needed, rpm automagically adds a requirement for /usr/bin/python3. Sorry, I should have copied it to the beginning. However, this is only a minor issue, so package is approved. Don't forget to open bugz for the excluded arches, thanks. -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 --- Comment #10 from Jun Aruga --- Hi I fixed every point you mentioned upsating Spec and SRPM URLs. Here is the modification. https://github.com/junaruga/fedora-bowtie2/commit/a09cc9aa542dd190ff0a4a54ca1ad8ae1a31947a I checked rpmlint, the binary RPM installation and scratch build here. https://koji.fedoraproject.org/koji/taskinfo?taskID=44066815 Could you review again? -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 --- Comment #9 from Jun Aruga --- Hi David and Vasily. I appreciate your review and help. Every point you mentioned makes sense. I am working on it now. -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 --- Comment #8 from Vasiliy Glazov --- Add %set_build_flags at top of build section. -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348
--- Comment #7 from david08...@gmail.com ---
Package Review
==
Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated
[ ] = Manual review needed
Issues:
===
Is there a good reason to not use the tar.gz from github as source0?
It would contain the source and the tests. The way I understand [1] combined
with [2] is that the not-downloadable source is only acceptable if the source
is not allowed in fedora.
Are there any items in release that are not allowed?
[1]
https://fedoraproject.org/wiki/Packaging:ReviewGuidelines#Things_To_Check_On_Review
[2]
https://fedoraproject.org/wiki/Packaging:SourceURL?rd=Packaging/SourceURL#When_Upstream_uses_Prohibited_Code
Typos: 'ultrafast' should be 'ultra fast'. Rest seems to be false-positives.
As configure isn't run, the compiler flags are not set.
Manuals for the binaries would be nice.
= MUST items =
C/C++:
[x]: Package does not contain kernel modules.
[x]: Package contains no static executables.
[x]: If your application is a C or C++ application you must list a
BuildRequires against gcc, gcc-c++ or clang.
[x]: Header files in -devel subpackage, if present.
[x]: Package does not contain any libtool archives (.la)
[x]: Rpath absent or only used for internal libs.
Generic:
[x]: Package is licensed with an open-source compatible license and meets
other legal requirements as defined in the legal section of Packaging
Guidelines.
[x]: License field in the package spec file matches the actual license.
Note: Checking patched sources after %prep for licenses. Licenses
found: "Unknown or generated", "*No copyright* GNU General Public
License (v3)", "GPL (v3 or later)", "zlib/libpng license". 40 files
have unknown license. Detailed output of licensecheck in
/home/dave/rpmbuild/review/1824348-bowtie2/licensecheck.txt
[x]: License file installed when any subpackage combination is installed.
[x]: If the package is under multiple licenses, the licensing breakdown
must be documented in the spec.
[!]: %build honors applicable compiler flags or justifies otherwise.
[-]: Package contains no bundled libraries without FPC exception.
[x]: Changelog in prescribed format.
[x]: Sources contain only permissible code or content.
[-]: Package contains desktop file if it is a GUI application.
[-]: Development files must be in a -devel package
[x]: Package uses nothing in %doc for runtime.
[x]: Package consistently uses macros (instead of hard-coded directory
names).
[x]: Package is named according to the Package Naming Guidelines.
[x]: Package does not generate any conflict.
[x]: Package obeys FHS, except libexecdir and /usr/target.
[-]: If the package is a rename of another package, proper Obsoletes and
Provides are present.
[!]: Requires correct, justified where necessary.
The explicit require on python3 doesn't seem to be needed. This
way python3 is listed twice as requirement.
[x]: Spec file is legible and written in American English.
[-]: Package contains systemd file(s) if in need.
[-]: Useful -debuginfo package or justification otherwise.
[ ]: Package is not known to require an ExcludeArch tag.
[x]: Large documentation must go in a -doc subpackage. Large could be size
(~1MB) or number of files.
Note: Documentation size is 245760 bytes in 5 files.
[x]: Package complies to the Packaging Guidelines
[x]: Package successfully compiles and builds into binary rpms on at least
one supported primary architecture.
[x]: Package installs properly.
[x]: Rpmlint is run on all rpms the build produces.
Note: There are rpmlint messages (see attachment).
[x]: If (and only if) the source package includes the text of the
license(s) in its own file, then that file, containing the text of the
license(s) for the package is included in %license.
[x]: Package requires other packages for directories it uses.
[x]: Package must own all directories that it creates.
[x]: Package does not own files or directories owned by other packages.
[x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
beginning of %install.
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Dist tag is present.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Package must not depend on deprecated() packages.
[x]: Package use %makeinstall only when make install DESTDIR=... doesn't
work.
[x]: Package is named using only allowed ASCII characters.
[x]: Package does not use a name that already exists.
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as
provided in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
%{name}.spec.
[x]: File names are valid UTF-8.
[x]: Packages must not store files under
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 david08...@gmail.com changed: What|Removed |Added CC||david08...@gmail.com Assignee|nob...@fedoraproject.org|david08...@gmail.com -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 --- Comment #6 from Jun Aruga --- Thanks for your review! I fixed every items you mentioned, and update the Spec and SRPM URL, and checked the rpmlint and installation and scratch build here again. https://koji.fedoraproject.org/koji/taskinfo?taskID=43660524 Sorry for the 2. %autosetup. You mentioned it for my last simde package's review. And now you had to say repeatedly it for this review too. -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 Vasiliy Glazov changed: What|Removed |Added CC||vasc...@gmail.com --- Comment #5 from Vasiliy Glazov --- 1. May be change it %ifnarch x86_64 BuildRequires: simde-devel %endif %ifarch x86_64 BuildRequires: tbb-devel %endif to %ifarch x86_64 BuildRequires: tbb-devel %else BuildRequires: simde-devel %endif 2. Change %setup -q to %autosetup 3. Change sed -i 's/“/"/g' processor_support.h sed -i 's/”/"/g' processor_support.h to sed -e 's/“/"/g' -e 's/”/"/g' -i processor_support.h -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 --- Comment #4 from Peter Lemenkov --- *** Bug 1824347 has been marked as a duplicate of this bug. *** -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 --- Comment #3 from Jun Aruga --- Hi Artur, thanks for your review! Okay. I fixed every items you mentioned above, and updated the files for Spec URL and SRPM URL. I confirmed that the bowite2 has the generated Perl modules "Requires:" by `rpm -q -R bowtie2`. I also checked binary RPM installation, and scratch build here again. https://koji.fedoraproject.org/koji/taskinfo?taskID=43511628 Could you review again? -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348
Artur Iwicki changed:
What|Removed |Added
CC||fed...@svgames.pl
--- Comment #2 from Artur Iwicki ---
>Requires: perl
Requiring the "perl" metapackage pulls in a lot of dependencies, many of which
will probably be unused. The Perl Packaging Guidelines say that there's a
generator that will automatically generate "Requires:" for appropriate Perl
modules.
https://docs.fedoraproject.org/en-US/packaging-guidelines/Perl/#_perl_requires_and_provides
>sed -i '1s|/usr/bin/env perl|/usr/bin/perl|' bowtie2
You might want to use %{_bindir}/perl here instead writing /usr/bin/perl.
>%make_install PREFIX="%{_usr}" DESTDIR="%{buildroot}"
1. Use %{_prefix} instead of %{_usr} here.
2. %make_install already sets up DESTDIR.
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[Bug 1824348] Review Request: bowtie2 - A read aligner for genome sequencing
https://bugzilla.redhat.com/show_bug.cgi?id=1824348 --- Comment #1 from Jun Aruga --- This is a package for the genome sequencing. I tested following things. * Check by `rpmlint`: ok * Check the binary RPMs installation: ok * Scratch build: ok https://koji.fedoraproject.org/koji/taskinfo?taskID=43448945 -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component ___ package-review mailing list -- package-review@lists.fedoraproject.org To unsubscribe send an email to package-review-le...@lists.fedoraproject.org Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@lists.fedoraproject.org
