Re: [Paraview] OpenFoam reader native built-in or plugin version differences
The SVN version supports 3.14.1 (the wiki page is outdated) and loads slightly newer OpenFOAM meshes. Takuya OSHIMA, Ph.D. Faculty of Engineering, Niigata University 8050 Ikarashi-Ninocho, Nishi-ku, Niigata, 950-2181, JAPAN From: Ian Curington i...@acm.org Subject: [Paraview] OpenFoam reader native built-in or plugin version differences Date: Wed, 18 Jul 2012 13:45:03 +0100 Dear ParaView OpenFoam users: http://openfoamwiki.net/index.php/Contrib_Parallelized_Native_OpenFOAM_Reader_for_ParaView current SVN source is configured as a plugin, has extra buttons (Watch, Rescale), however only mentions working with ParaView 3.10/11. Meanwhile, ParaView 3.14.1 ( current GIT) has built-in OpenFoam reader (without Watch, Rescale). So, which one is most up to date? Which one loads the most recent OpenFoam meshes? Is the plugin ported to 3.14.1? ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
[Paraview] Q-criterion still wrong ?
Good morning, I have just found the following bug report about a mistake in the Q-criterion formula. http://paraview.org/Bug/view.php?id=12858 that is now closed. However, the 1/2 factor may still be missing. In vtkGradientFilter.cxx, in the VTK/Grahpics directory, on the line 65, t1 should be divided by 2. (Paraview 3.14.1) Should I re-open the bug report ? With best regards, Aurélien ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
[Paraview] Render own vtkpoints, vtkpolydata, ...
I wrote a plugin (custom gui) in Paraview and am able to compute my data with my own created libraries. The problem now is that I want to visualize this data (vtkpolydata) in paraview and I do not know which class and which functions to use. I probably need to access the view window and transfer data there, but does anybody know how to do it? Best regards ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
[Paraview] producing uniform velocity vector?
Dear Paraview experts, I am wondering how I can produce uniform velocity vector of the flow field using Glyph. When I unchecked the mask points, paraview plots vector at ALL points. This is way too much for my case. I would like to reduce the number of vectors. However, if I selected the Mask Points, then, some area has lots of vector, while some other areas have almost NO vector plotted. I am looking for plotting the vectors in a uniform fashion across the whole flow domain. I am wondering how I can achieve this. Suggestions will be highly appreciated. Pei-Ying ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
Re: [Paraview] producing uniform velocity vector?
Apply resample with data set, with then input port being your data and the source port being an appropriately sized and place wavelet. Glyph the output of that. David E DeMarle Kitware, Inc. RD Engineer 21 Corporate Drive Clifton Park, NY 12065-8662 Phone: 518-881-4909 On Fri, Jul 20, 2012 at 10:47 AM, Pei-Ying Hsieh phsieh2...@yahoo.com wrote: Dear Paraview experts, I am wondering how I can produce uniform velocity vector of the flow field using Glyph. When I unchecked the mask points, paraview plots vector at ALL points. This is way too much for my case. I would like to reduce the number of vectors. However, if I selected the Mask Points, then, some area has lots of vector, while some other areas have almost NO vector plotted. I am looking for plotting the vectors in a uniform fashion across the whole flow domain. I am wondering how I can achieve this. Suggestions will be highly appreciated. Pei-Ying ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
Re: [Paraview] Data directory in pvsm files
Hello Utkarsh, Mohamad, Note we have supplied a working patch at: http://www.paraview.org/Bug/view.php?id=13092 which includes arbitrary environment variable support in pvsm paths: where environment can be reference using syntax of %VAR_NAME%, ${VAR_NAME} and $VAR_NAME. In the latest case ($VAR_NAME), VAR_NAME must be from [a-zA-Z0-9_-]+ language. so full absolute paths can be replaced with: Property name=FileName id=2875.FileName number_of_elements=1 Element index=0 value=${MY_DATA}/interesting_result.vtk/ We are using it in deployed production projects. -Ian Wednesday, July 18, 2012, 9:32:20 PM, you wrote: It's not possible currently, but I think we should provide some clean solution for the next release. Mind reporting a feature request on the bug tracker (can't remember if there's on already)? Utkarsh On Tue, Jul 17, 2012 at 4:06 AM, Mohamad M. Nasr-Azadani mmn...@gmail.com wrote: Hi, I have a simple question. Is it possible to assign an environment variable to define data directory in pvsm files? As I save a pvsm file, I see that paraview uses the complete directory address to add files to the pvsm file. I was wondering if there is a way to define that? Or, an alternative question is, is there anyway for paraview just to write the file names (and not the corresponding full directory)? That way, we can run the pvsm file in any directory as long as all the data files are in the current directory where the pvsm file is stored. Thanks, Mohamad ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview -- Best regards, Ianmailto:i...@acm.org ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
Re: [Paraview] ParaView thinks that it does not have a wind blade reader
Thanks. In today's git master it now sits in VTK/IO/Parallel/vtkWindbladeReader. The serial version should go in VTK/IO/Geometry. The MPI version should go in a new module VTK/IO/MPIParallel. (VTK/IO/Parallel depends only on vtkSocketController now and should not depend on vtkMPIController). Finally when that is done we can remove the flag in paraview's xml that prevents it from being used in serial. David E DeMarle Kitware, Inc. RD Engineer 21 Corporate Drive Clifton Park, NY 12065-8662 Phone: 518-881-4909 On Thu, Jul 19, 2012 at 7:08 PM, Sohail Shafii sohailsha...@yahoo.com wrote: Well it seems like #1 and #2 can be solved by writing a new parallel wind blade reader class. I had similar experience by creating distributed versions of class that I created in other vtk directories. The normal wind blade reader would have no parallel calls, which would address #1. What I find interesting is that in your directories, the wind blade reader is located in VTK/IO/Parallel. For the ParaView snapshot that I downloaded, as well as the 3.14 source, it's still in VTK/Parallel. No Parallel folder in VTK/IO. Is this a recent change? So maybe the ideal folder layout would be: VTK/IO/WindBladeReader.* VTK/IO/Parallel/DistributedWindBladeReader.* I can make changes to the WindBladeReader to remove the MPI-IO calls and make a distributed wind blade reader class in case you want to add them to the repository. The one template I have for the parallel/serial split is the vtkStreamTracer and its distributed counterparts so I can use those as a guide. If you have better recommendations please let me know. Sohail From: David E DeMarle dave.dema...@kitware.com To: Sohail Shafii sohailsha...@yahoo.com Cc: Andy Bauer andy.ba...@kitware.com; migic...@gmail.com migic...@gmail.com; paraview@paraview.org paraview@paraview.org; Woodring, Jonathan L woodr...@lanl.gov Sent: Thursday, July 19, 2012 3:20 PM Subject: Re: [Paraview] ParaView thinks that it does not have a wind blade reader Two issues need to be fixed. 1) that behavior in 3.14 is there because of this fix which we had to rush in just before the 3.14 release. Committer: Utkarsh Ayachit utkarsh.ayac...@kitware.com 2012-02-08 17:12:18 Parent: e401d569f6e54c49c3497852463f6b13a01da8b6 (Update version after 3.14.0-RC1 tag.) Child: 99fdb1aeb5997c29b43393f45a478c4b53a23109 (Merge topic 'fix_windblade_segfault') Branches: many (31) Follows: v3.14.0-RC1 Precedes: v3.14.0-RC2 Fix segfault with ParaView built with MPI when opening *.vtr files. The problem was that vtkWindBlade reader was getting created to test CanReadFile and that would cause segfault unless MPI was initialized. Solved the problem by added support to vtkSMReaderFactory to respect the ProcessSupport flag on SourceProxy and change windblade reader XML to say that it only works in parallel. In other words, Windblade reader's Constructor should not take it upon itself to initialize MPI. Once that is fixed, we get to issue 2 before paraview 4.0 2) VTK's new modularization has the rule that no module can behave differently with parallel (or most other cmake config options) turned configured on or off. This is so because it makes it very hard to package VTK when the libs behave differently in different situations. Ie, we can't have any more #ifdef VTK_USE_MPI do something #else do something different #endif in VTK classes. Now if we want a class to behave differently when MPI is turned on or off we have to make a serial only version in a non MPI dependent module and a subclass of that in an MPI dependent module. David E DeMarle Kitware, Inc. RD Engineer 21 Corporate Drive Clifton Park, NY 12065-8662 Phone: 518-881-4909 On Thu, Jul 19, 2012 at 3:52 PM, Sohail Shafii sohailsha...@yahoo.com wrote: When running serially, vtkSMReaderFactory::CanReadFile sees that the session has a single process. As such, on line 660 it realizes that the source proxy's process support (in this case the source is a vtkWindBladeReader proxy) is multiple processes, which causes a return of false from that function. This makes ParaView think that the wind blade reader can't read a .wind file in serial. According to Andy, the reader works find in parallel. I assume that a fix for this is pretty trivial? It never did this before in previous versions of ParaView and I think that the wind blade reader code has remained mostly the same. Andy mentioned some details in person when he was talking with Jon but at that time I didn't know as much as I do now. There is a mention below about enabling the filter in serial and parallel -- is this done in a xml file? Sohail From: David E DeMarle dave.dema...@kitware.com To: Sohail Shafii sohailsha...@yahoo.com Cc: Andy Bauer andy.ba...@kitware.com; migic...@gmail.com migic...@gmail.com;
Re: [Paraview] producing uniform velocity vector?
Hi, David, Thanks for the reply! When I applied Resample with Dataset, Paraview popped up an windows, showing available input port and the dataset I have. It is not clear to me about what to do with the source port. How do I size and place wavelet? Do I need to do this first before I apply resample with dataset? Pei-Ying From: David E DeMarle dave.dema...@kitware.com To: Pei-Ying Hsieh phsieh2...@yahoo.com Cc: paraview paraview@paraview.org Sent: Friday, July 20, 2012 11:13 AM Subject: Re: [Paraview] producing uniform velocity vector? Apply resample with data set, with then input port being your data and the source port being an appropriately sized and place wavelet. Glyph the output of that. David E DeMarle Kitware, Inc. RD Engineer 21 Corporate Drive Clifton Park, NY 12065-8662 Phone: 518-881-4909 On Fri, Jul 20, 2012 at 10:47 AM, Pei-Ying Hsieh phsieh2...@yahoo.com wrote: Dear Paraview experts, I am wondering how I can produce uniform velocity vector of the flow field using Glyph. When I unchecked the mask points, paraview plots vector at ALL points. This is way too much for my case. I would like to reduce the number of vectors. However, if I selected the Mask Points, then, some area has lots of vector, while some other areas have almost NO vector plotted. I am looking for plotting the vectors in a uniform fashion across the whole flow domain. I am wondering how I can achieve this. Suggestions will be highly appreciated. Pei-Ying ___ Powered by http://www.kitware.com/ Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
Re: [Paraview] producing uniform velocity vector?
On Fri, Jul 20, 2012 at 1:25 PM, Pei-Ying Hsieh phsieh2...@yahoo.com wrote: Hi, David, Thanks for the reply! Welcome. about what to do with the source port. How do I size and place wavelet? The extent parameters of the wavelet itself to choose number of samples in x,y,z, and transform filter to move and scale it to be co-located with the other data set. Do I need to do this first before I apply resample with dataset? Ideally, but you can change it afterward. ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
Re: [Paraview] Question on Multiple Ports in Custom Reader (repost from developer list)
Hi Josh, On Thu, Jul 12, 2012 at 10:51 AM, Joshua Murphy joshua.mur...@lasp.colorado.edu wrote: Here is a version of my generic reader that will build a non-time series version and a time series version. This way you can observe the behavior. A file is not read in the reader, but it generates sample data on its own... just select any txt file to test. (as noted in previous emails, the information objects are not provided properly to requestInformation and requestData when using the time series version)... It seems that vtkFileSeriesReader does not support multiple output ports. Quoting Utkarsh from http://www.paraview.org/pipermail/paraview/2011-December/023494.html vtkFileSeriesReader cannot support multiple output ports. Number of output ports has to be defined in the constructor of a class. Since the internal reader to use is not set until much later, vtkFileSeriesReader cannot report but 1 output port in the construtor and that cannot be changed afterwords. Maybe you can try supclassing the vtkFileSeriesReader to add support for that, but I'm not sure how much effort would it be to support requests from multiple output ports. Alternatively, you may just want to implemented file-series support in your reader. Does anyone have a good example of file-series support in a reader other than vtkFileSeriesReader documented here http://www.paraview.org/Wiki/Animating_legacy_VTK_file_series#Making_custom_readers_work_with_file_series ? Cheers, Pete ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
Re: [Paraview] Q-criterion still wrong ?
Thanks for finding this. I have a fix in gerrit at http://review.source.kitware.com/#/t/957/. It should make it into VTK and ParaView shortly. Andy On Fri, Jul 20, 2012 at 8:53 AM, Aurélien Marsan aur.mar...@gmail.comwrote: Good morning, I have just found the following bug report about a mistake in the Q-criterion formula. http://paraview.org/Bug/view.php?id=12858 that is now closed. However, the 1/2 factor may still be missing. In vtkGradientFilter.cxx, in the VTK/Grahpics directory, on the line 65, t1 should be divided by 2. (Paraview 3.14.1) Should I re-open the bug report ? With best regards, Aurélien ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
Re: [Paraview] [EXTERNAL] ParaView looking for MPI when it shouldn't.
FYI, I've pushed a fix for this to VTK : http://review.source.kitware.com/#/t/912/ It will make it into ParaView soon. Utkarsh On Thu, Jul 5, 2012 at 4:26 PM, Scott, W Alan wasc...@sandia.gov wrote: Correct. I should have written up a bug before, but will do so now. Alan From: Andrew Maclean [mailto:andrew.amacl...@gmail.com] Sent: Thursday, July 05, 2012 5:24 PM To: Scott, W Alan Cc: paraview@paraview.org Subject: Re: [EXTERNAL] [Paraview] ParaView looking for MPI when it shouldn't. Thanks, Scott, Yes, that does the trick. I guess this is not being seen on the dashboard because those machines all have MPI running. So there is a need to look at the CMakeLists.txt files for examples and testing to make sure that if MPI is excluded then those examples/tests need to be excluded. Thanks Andrew On Fri, Jul 6, 2012 at 9:11 AM, Scott, W Alan wasc...@sandia.gov wrote: I had the same issue. If I remember correctly, I “think” the solution was to turn off BUILD_EXAMPLES and BUILD_TESTING. Alan From: paraview-boun...@paraview.org [mailto:paraview-boun...@paraview.org] On Behalf Of Andrew Maclean Sent: Thursday, July 05, 2012 5:08 PM To: paraview@paraview.org Subject: [EXTERNAL] [Paraview] ParaView looking for MPI when it shouldn't. Hi All, I am building ParaView from the Git repository and for some reason it is looking for MPI even though I have PARAVIEW_USE_MPI turned off. I can't see any other setting that is forcing MPI to be turned on. Is there something I am missing or is there an error in the configuration files? My output is: ... - Filter ZLIB is ON -- Could NOT find MPI_C (missing: MPI_C_LIBRARIES MPI_C_INCLUDE_PATH) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIBRARIES MPI_CXX_INCLUDE_PATH) CMake Error at VTK/Parallel/MPI/CMakeLists.txt:35 (message): MPIEXEC was empty. -- Configuring incomplete, errors occurred! make: *** [cmake_check_build_system] Error 1 Regards -- ___ Andrew J. P. Maclean ___ -- ___ Andrew J. P. Maclean ___ ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
Re: [Paraview] [EXTERNAL] ParaView looking for MPI when it shouldn't.
Thanks! Sent from an Android tablet. On Jul 21, 2012 6:10 AM, Utkarsh Ayachit utkarsh.ayac...@kitware.com wrote: FYI, I've pushed a fix for this to VTK : http://review.source.kitware.com/#/t/912/ It will make it into ParaView soon. Utkarsh On Thu, Jul 5, 2012 at 4:26 PM, Scott, W Alan wasc...@sandia.gov wrote: Correct. I should have written up a bug before, but will do so now. Alan From: Andrew Maclean [mailto:andrew.amacl...@gmail.com] Sent: Thursday, July 05, 2012 5:24 PM To: Scott, W Alan Cc: paraview@paraview.org Subject: Re: [EXTERNAL] [Paraview] ParaView looking for MPI when it shouldn't. Thanks, Scott, Yes, that does the trick. I guess this is not being seen on the dashboard because those machines all have MPI running. So there is a need to look at the CMakeLists.txt files for examples and testing to make sure that if MPI is excluded then those examples/tests need to be excluded. Thanks Andrew On Fri, Jul 6, 2012 at 9:11 AM, Scott, W Alan wasc...@sandia.gov wrote: I had the same issue. If I remember correctly, I “think” the solution was to turn off BUILD_EXAMPLES and BUILD_TESTING. Alan From: paraview-boun...@paraview.org [mailto: paraview-boun...@paraview.org] On Behalf Of Andrew Maclean Sent: Thursday, July 05, 2012 5:08 PM To: paraview@paraview.org Subject: [EXTERNAL] [Paraview] ParaView looking for MPI when it shouldn't. Hi All, I am building ParaView from the Git repository and for some reason it is looking for MPI even though I have PARAVIEW_USE_MPI turned off. I can't see any other setting that is forcing MPI to be turned on. Is there something I am missing or is there an error in the configuration files? My output is: ... - Filter ZLIB is ON -- Could NOT find MPI_C (missing: MPI_C_LIBRARIES MPI_C_INCLUDE_PATH) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIBRARIES MPI_CXX_INCLUDE_PATH) CMake Error at VTK/Parallel/MPI/CMakeLists.txt:35 (message): MPIEXEC was empty. -- Configuring incomplete, errors occurred! make: *** [cmake_check_build_system] Error 1 Regards -- ___ Andrew J. P. Maclean ___ -- ___ Andrew J. P. Maclean ___ ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
[Paraview] visualizing a material in paraview
Hello, I'm new to Paraview. I have 2 questions about visualizing an atomic material from a LAMMPS simulation. 1. I got the atom coordinates in from LAMMPS into Paraview using Pizza.py. When I just import the file, I can look at it as-is using point representation. To make it look more like atoms, I can also use the glyphs filter on the input file. But! some of the points end up outside the spheres. My question is, why are there points that don't turn into spheres? How does PV decide what turns into a glyph and what doesn't? 2. What I'd like to do next is to see the pore space - i.e., everything that's in my simulation box that's outside the glyphs. Is there already a filter for that? I thought I might be able to make a box that's the same size as my simulation box and intersect it with the glyphs object, but I can't figure out how to do that. Thank you! Celia ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview
Re: [Paraview] visualizing a material in paraview
1) Look at the bottom of the glyph filter's properties tab. Max number of points and random mode says pick 5000 points at random and only glyph those. If turning that off makes paraview slow consider the point sprite or manta plugins. 2) Use the gaussian resampling filter to push the values onto a regular grid and then isocontour that. David E DeMarle Kitware, Inc. RD Engineer 21 Corporate Drive Clifton Park, NY 12065-8662 Phone: 518-881-4909 On Fri, Jul 20, 2012 at 5:44 PM, Celia Bremer fuw...@hotmail.com wrote: Hello, I'm new to Paraview. I have 2 questions about visualizing an atomic material from a LAMMPS simulation. 1. I got the atom coordinates in from LAMMPS into Paraview using Pizza.py. When I just import the file, I can look at it as-is using point representation. To make it look more like atoms, I can also use the glyphs filter on the input file. But! some of the points end up outside the spheres. My question is, why are there points that don't turn into spheres? How does PV decide what turns into a glyph and what doesn't? 2. What I'd like to do next is to see the pore space - i.e., everything that's in my simulation box that's outside the glyphs. Is there already a filter for that? I thought I might be able to make a box that's the same size as my simulation box and intersect it with the glyphs object, but I can't figure out how to do that. Thank you! Celia ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview ___ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Follow this link to subscribe/unsubscribe: http://www.paraview.org/mailman/listinfo/paraview