Re: ORCID in Invenio
On 09.08.2013 10:40, Laura Rueda wrote: Hi! That sounds very promising. How much do you already have here? On what invenio version are you implementing it? I guess it is next/ in case, could this be (easily) backportable to the 1.x series? We are working on 1.x as well, but our developments are a bit tailored to the peculiarities of the INSPIRE installation. If the tayloring is not to much hardcoded I think we could well live with our friends from inspire. We could check out if/where/how we need adoptions/configs. I'd be very interested, indeed. ORCiD integration is quite a hot topic here and I'd definitely not want to redo what's already done. We should probably check out how to team up e.g. if registration of ORCiDs is not that much of interest on your end we could work on that as we definitely would need that. Sounds excellent! I will send you more information so we can see how to get the best from the effort. So I get it we'll go that way :) At the moment we have some smaller issues to sort out first, but ORCiD is then one of our very next topics. Thanks! De rien :) -- Kind regards, Alexander Wagner Subject Specialist Central Library 52425 Juelich mail : a.wag...@fz-juelich.de phone: +49 2461 61-1586 Fax : +49 2461 61-6103 www.fz-juelich.de/zb/DE/zb-fi Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher Geschaeftsfuehrung: Prof. Dr. Achim Bachem (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Prof. Dr. Sebastian M. Schmidt Das Forschungszentrum oeffnet seine Tueren am Sonntag, 29. September, von 10:00 bis 17:00 Uhr: http://www.tagderneugier.de
Re: ORCID in Invenio
That sounds very promising. How much do you already have here? On what invenio version are you implementing it? I guess it is next/ in case, could this be (easily) backportable to the 1.x series? We are working on 1.x as well, but our developments are a bit tailored to the peculiarities of the INSPIRE installation. I'd be very interested, indeed. ORCiD integration is quite a hot topic here and I'd definitely not want to redo what's already done. We should probably check out how to team up e.g. if registration of ORCiDs is not that much of interest on your end we could work on that as we definitely would need that. Sounds excellent! I will send you more information so we can see how to get the best from the effort. Thanks! Laura
Re: Problem caused by socket.setdefaulttimeout()
Hey Jay, Interesting problem. I can reproduce the problem on ZENODO production machines running Python 2.6.6 but I cannot reproduce on my Ubuntu installation with Python 2.7.4 Btw...you might want to look into Celery for distributed processing. Naturally I don't know if it would fit your use-case, but at least I've found celery much less headache than trying to use multiprocessing :-) Best regards, Lars On 08.08.2013 22:31, Luker, James wrote: Hi gang, Does this stacktrace look familiar-ish to anyone? Traceback (most recent call last): File "", line 1, in File "/home/jluker/.pythonbrew/pythons/Python-2.7.3/lib/python2.7/multiprocessing/managers.py", line 667, in temp token, exp = self._create(typeid, *args, **kwds) File "/home/jluker/.pythonbrew/pythons/Python-2.7.3/lib/python2.7/multiprocessing/managers.py", line 565, in _create conn = self._Client(self._address, authkey=self._authkey) File "/home/jluker/.pythonbrew/pythons/Python-2.7.3/lib/python2.7/multiprocessing/connection.py", line 175, in Client answer_challenge(c, authkey) File "/home/jluker/.pythonbrew/pythons/Python-2.7.3/lib/python2.7/multiprocessing/connection.py", line 413, in answer_challenge message = connection.recv_bytes(256) # reject large message IOError: [Errno 11] Resource temporarily unavailable We started seeing exceptions like that yesterday when we tried incorporating a new blueprint into our ADS 2.0 Flask app that uses some components of the python mulitprocessing library. Googling turned up a few clues and mentions about socket timeout stuff. I suspected something we were importing was maybe monkey-patching or otherwise messing with sockets, so I painstakingly went through all of our import chains and tracked it back to bibdocfile.py*, where it sets "socket.setdefaulttimeout(40)". Apparently that's enough to totally break multiprocessing. I don't really understand why, but you can duplicate the error very easily... >>> import socket >>> socket.setdefaulttimeout(40) >>> from multiprocessing import Manager >>> m = Manager() >>> res = m.list([]) Traceback ... I was able to work around the exceptions by simply calling, socket.setdefaulttimeout(None), immediately after the "from invenio import ..." statements, but I figured I should give you a heads up. Also, Roman mentioned that you'd had problems making use of the multiprocessing library in the past. Surely it's not that simple though. --jay * our app imports some functions like run_sql from invenio -- Lars Holm Nielsen CERN, IT Department, Collaboration & Information Services http://zenodo.org | Tel: +41 22 76 79182 | Cel: +41 76 672 8927 smime.p7s Description: S/MIME Cryptographic Signature
Re: ORCID in Invenio
On 09.08.2013 09:30, Laura Rueda wrote: Hello Laura! Indeed, the ticket does not offer much information :) I can tell you that we are working on the ORCID integration under the EU Project ODIN (http://odin-project.eu/) and Lars will be doing something similar for Zenodo. Already imagined something like that :) We will cover the OAuth login (it can be important to have access to the 'limited' publications) and both push and pull. In fact, we are also working with ORCID for a quick push/pull, based on DOIs. That sounds very promising. How much do you already have here? On what invenio version are you implementing it? I guess it is next/ in case, could this be (easily) backportable to the 1.x series? What is not in our current use cases is the autoregistration on submission. But I understand it will be as simple as to "plug" the OAuth step. This sounds promising. It could be that we could come up with this plugin, given we know the framework around. I will be happy to keep you updated! I'd be very interested, indeed. ORCiD integration is quite a hot topic here and I'd definitely not want to redo what's already done. We should probably check out how to team up e.g. if registration of ORCiDs is not that much of interest on your end we could work on that as we definitely would need that. -- Kind regards, Alexander Wagner Subject Specialist Central Library 52425 Juelich mail : a.wag...@fz-juelich.de phone: +49 2461 61-1586 Fax : +49 2461 61-6103 www.fz-juelich.de/zb/DE/zb-fi Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher Geschaeftsfuehrung: Prof. Dr. Achim Bachem (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Prof. Dr. Sebastian M. Schmidt Das Forschungszentrum oeffnet seine Tueren am Sonntag, 29. September, von 10:00 bis 17:00 Uhr: http://www.tagderneugier.de
Re: ORCID in Invenio
Hello Alexander, Indeed, the ticket does not offer much information :) I can tell you that we are working on the ORCID integration under the EU Project ODIN (http://odin-project.eu/) and Lars will be doing something similar for Zenodo. We will cover the OAuth login (it can be important to have access to the 'limited' publications) and both push and pull. In fact, we are also working with ORCID for a quick push/pull, based on DOIs. What is not in our current use cases is the autoregistration on submission. But I understand it will be as simple as to "plug" the OAuth step. I will be happy to keep you updated! Laura On 09/08/13 08:58, Alexander Wagner wrote: Hi! In http://invenio-software.org/ticket/1379 ORCID is specified for integration in Author profiles / Websearch. Unfortunatley, the ticket is a bit short in words ;) Anyway, what are the plans/current status of Invenio wrt ORCiD? I'd not be so much interested in OAuth-Like logins or the like but more in data exchange of Invenio <-> ORCiD. Say: autoregistration to ORCiD as soon as a paper is submitted, and authors don't have an ORCiD or we don't know it yet. (In our workflow, finally approved by the library). Pushing bibliographic information from Invenio -> ORCiD, probably get publications from an ORCiD record into Invenio, stuff like that. So something like the member-api of http://support.orcid.org/knowledgebase/articles/116874-orcid-api-guide Anyone working on that and/or interested in joining forces? -- Kind regards, Alexander Wagner Subject Specialist Central Library 52425 Juelich mail : a.wag...@fz-juelich.de phone: +49 2461 61-1586 Fax : +49 2461 61-6103 www.fz-juelich.de/zb/DE/zb-fi Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher Geschaeftsfuehrung: Prof. Dr. Achim Bachem (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Prof. Dr. Sebastian M. Schmidt Das Forschungszentrum oeffnet seine Tueren am Sonntag, 29. September, von 10:00 bis 17:00 Uhr: http://www.tagderneugier.de
ORCID in Invenio
Hi! In http://invenio-software.org/ticket/1379 ORCID is specified for integration in Author profiles / Websearch. Unfortunatley, the ticket is a bit short in words ;) Anyway, what are the plans/current status of Invenio wrt ORCiD? I'd not be so much interested in OAuth-Like logins or the like but more in data exchange of Invenio <-> ORCiD. Say: autoregistration to ORCiD as soon as a paper is submitted, and authors don't have an ORCiD or we don't know it yet. (In our workflow, finally approved by the library). Pushing bibliographic information from Invenio -> ORCiD, probably get publications from an ORCiD record into Invenio, stuff like that. So something like the member-api of http://support.orcid.org/knowledgebase/articles/116874-orcid-api-guide Anyone working on that and/or interested in joining forces? -- Kind regards, Alexander Wagner Subject Specialist Central Library 52425 Juelich mail : a.wag...@fz-juelich.de phone: +49 2461 61-1586 Fax : +49 2461 61-6103 www.fz-juelich.de/zb/DE/zb-fi Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher Geschaeftsfuehrung: Prof. Dr. Achim Bachem (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Prof. Dr. Sebastian M. Schmidt Das Forschungszentrum oeffnet seine Tueren am Sonntag, 29. September, von 10:00 bis 17:00 Uhr: http://www.tagderneugier.de
