Re: [PyMOL] Error while running a python script

2013-03-20 Thread Thomas Holder 
Hi Bharat,

you should run python scripts from within PyMOL using the "run" command:
http://pymolwiki.org/index.php/Running_Scripts

Or follow these examples if you really need to launch PyMOL from a
python session (not recommended for beginners):
http://pymolwiki.org/index.php/Launching_From_a_Script

Cheers,
  Thomas

bharat gupta wrote, On 03/20/13 03:23:
> Hi,
> 
> I am a newbie in python scripting from pymol. I am getting the following
> error while using the command cmd.load :-
> 
> from pymol import cmd
> 
> print "Current PyMoL Directory:", cmd.pwd()
> cmd.load ("1A73.pdb")
> 
> Error:-
> --
> Traceback (most recent call last):
>   File "test.py", line 5, in 
> cmd.load ("1A73.pdb")
>   File "/usr/lib/python2.7/site-packages/pymol/importing.py", line 872,
> in load
> _self.unlock(r,_self)
>   File "/usr/lib/python2.7/site-packages/pymol/locking.py", line 79, in
> unlock
> if (thread.get_ident() == pymol.glutThread):
> AttributeError: 'module' object has no attribute 'glutThread'
> 
> 
> Bharat

-- 
Thomas Holder
PyMOL Developer
Schrödinger Contractor

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Re: [PyMOL] Error while running a python script

2013-03-20 Thread Troels Emtekær Linnet 
Is that a space in your command?

cmd.load ("1A73.pdb")



Troels Emtekær Linnet
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2013/3/20 bharat gupta 

> Hi,
>
> I am a newbie in python scripting from pymol. I am getting the following
> error while using the command cmd.load :-
>
>
> from pymol import cmd
>
> print "Current PyMoL Directory:", cmd.pwd()
> cmd.load ("1A73.pdb")
>
> Error:-
> --
> Traceback (most recent call last):
>   File "test.py", line 5, in 
> cmd.load ("1A73.pdb")
>   File "/usr/lib/python2.7/site-packages/pymol/importing.py", line 872, in
> load
> _self.unlock(r,_self)
>   File "/usr/lib/python2.7/site-packages/pymol/locking.py", line 79, in
> unlock
> if (thread.get_ident() == pymol.glutThread):
> AttributeError: 'module' object has no attribute 'glutThread'
>
>
>
> 
> Bharat
>
>
>
> --
> Everyone hates slow websites. So do we.
> Make your web apps faster with AppDynamics
> Download AppDynamics Lite for free today:
> http://p.sf.net/sfu/appdyn_d2d_mar
> ___
> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
>
--
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Re: [PyMOL] Error while running a python script

2013-03-19 Thread bharat gupta 
Hi,

I am a newbie in python scripting from pymol. I am getting the following
error while using the command cmd.load :-


from pymol import cmd

print "Current PyMoL Directory:", cmd.pwd()
cmd.load ("1A73.pdb")

Error:-
--
Traceback (most recent call last):
  File "test.py", line 5, in 
cmd.load ("1A73.pdb")
  File "/usr/lib/python2.7/site-packages/pymol/importing.py", line 872, in
load
_self.unlock(r,_self)
  File "/usr/lib/python2.7/site-packages/pymol/locking.py", line 79, in
unlock
if (thread.get_ident() == pymol.glutThread):
AttributeError: 'module' object has no attribute 'glutThread'




Bharat
--
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