Re: [PyMOL] pymol 1.4.1 (incentive), segfault upon help-about
Hi Jason, I just installed pymol 1.5.0.3 on our linux machines and the segfault in libtcl8.5.so upon help-about is still present. Do you have any hint when this will be fixed? Best regards, Joachim -- Dr. rer. nat. Joachim Greipel Med. Hochschule Hannover Biophys. Chem. OE 4350 Carl-Neuberg-Str. 1 30625 Hannover Germany Fon: +49-511-532-3718 Fax: +49-511-532-16-3718 -Ursprüngliche Nachricht- Von: Jason Vertrees [mailto:jason.vertr...@schrodinger.com] Gesendet: Donnerstag, 19. Mai 2011 17:53 An: Greipel, Joachim Dr. Cc: pymol-users@lists.sourceforge.net; h...@schrodinger.com Betreff: Re: [PyMOL] pymol 1.4.1 (incentive), segfault upon help-about Hi Joachim, I always get a segmentation fault, when I click help-about to see the version details of pymol. The respective entry in /var/log/messages is: pymol.exe[4991]: segfault at 3e0019b ip f74857a0 sp f3bab9a8 error 4 in libtcl8.5.so[f741+ed0 00] Indeed on a few Linux distros, there is a crash when selecting Help About. We're trying to track down the cause. The error happens in our pure Python code and the segfault happens in the libtcl8.5 shared library. If you're checking for the PyMOL version number, please use get_version in the meantime. Cheers, -- Jason -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 smime.p7s Description: S/MIME cryptographic signature -- Try before you buy = See our experts in action! The most comprehensive online learning library for Microsoft developers is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, Metro Style Apps, more. Free future releases when you subscribe now! http://p.sf.net/sfu/learndevnow-dev2___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] pymol 1.4.1 (incentive), segfault upon help-about
Try install tkinter Tkinter uses tcl 8.4 (something...) Troels Emtekær Linnet Lyongade 24. 4.mf, 2300 København S Mobil: +45 60210234 2012/2/27 greipel.joac...@mh-hannover.de Hi Jason, I just installed pymol 1.5.0.3 on our linux machines and the segfault in libtcl8.5.so upon help-about is still present. Do you have any hint when this will be fixed? Best regards, Joachim -- Dr. rer. nat. Joachim Greipel Med. Hochschule Hannover Biophys. Chem. OE 4350 Carl-Neuberg-Str. 1 30625 Hannover Germany Fon: +49-511-532-3718 Fax: +49-511-532-16-3718 -Ursprüngliche Nachricht- Von: Jason Vertrees [mailto:jason.vertr...@schrodinger.com] Gesendet: Donnerstag, 19. Mai 2011 17:53 An: Greipel, Joachim Dr. Cc: pymol-users@lists.sourceforge.net; h...@schrodinger.com Betreff: Re: [PyMOL] pymol 1.4.1 (incentive), segfault upon help-about Hi Joachim, I always get a segmentation fault, when I click help-about to see the version details of pymol. The respective entry in /var/log/messages is: pymol.exe[4991]: segfault at 3e0019b ip f74857a0 sp f3bab9a8 error 4 in libtcl8.5.so[f741+ed0 00] Indeed on a few Linux distros, there is a crash when selecting Help About. We're trying to track down the cause. The error happens in our pure Python code and the segfault happens in the libtcl8.5 shared library. If you're checking for the PyMOL version number, please use get_version in the meantime. Cheers, -- Jason -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 -- Try before you buy = See our experts in action! The most comprehensive online learning library for Microsoft developers is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, Metro Style Apps, more. Free future releases when you subscribe now! http://p.sf.net/sfu/learndevnow-dev2 ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Try before you buy = See our experts in action! The most comprehensive online learning library for Microsoft developers is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, Metro Style Apps, more. Free future releases when you subscribe now! http://p.sf.net/sfu/learndevnow-dev2___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
[PyMOL] pymol 1.4.1 (incentive), segfault upon help-about
Hi all, I always get a segmentation fault, when I click help-about to see the version details of pymol. The respective entry in /var/log/messages is: pymol.exe[4991]: segfault at 3e0019b ip f74857a0 sp f3bab9a8 error 4 in libtcl8.5.so[f741+ed0 00] This happens on all machines tested so far, which range from openSuSE 11.2 to SLES11SP1 and is independent of working directly at the console or from remote. Do you have any advice? Regards, Joachim -- Dr. rer. nat. Joachim Greipel Med. Hochschule Hannover Biophys. Chem. OE 4350 Carl-Neuberg-Str. 1 30625 Hannover Germany Fon: +49-511-532-3718 Fax: +49-511-532-8924 smime.p7s Description: S/MIME cryptographic signature -- What Every C/C++ and Fortran developer Should Know! Read this article and learn how Intel has extended the reach of its next-generation tools to help Windows* and Linux* C/C++ and Fortran developers boost performance applications - including clusters. http://p.sf.net/sfu/intel-dev2devmay___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] pymol 1.4.1 (incentive), segfault upon help-about
Hi Joachim, I always get a segmentation fault, when I click help-about to see the version details of pymol. The respective entry in /var/log/messages is: pymol.exe[4991]: segfault at 3e0019b ip f74857a0 sp f3bab9a8 error 4 in libtcl8.5.so[f741+ed0 00] Indeed on a few Linux distros, there is a crash when selecting Help About. We're trying to track down the cause. The error happens in our pure Python code and the segfault happens in the libtcl8.5 shared library. If you're checking for the PyMOL version number, please use get_version in the meantime. Cheers, -- Jason -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 -- What Every C/C++ and Fortran developer Should Know! Read this article and learn how Intel has extended the reach of its next-generation tools to help Windows* and Linux* C/C++ and Fortran developers boost performance applications - including clusters. http://p.sf.net/sfu/intel-dev2devmay ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] pymol 1.4.1 (incentive), segfault upon help-about
hi pymol I always get a segmentation fault, when I click help-about to see the version details of pymol. The respective entry in /var/log/messages is: ... Indeed on a few Linux distros, there is a crash when selecting Help About. We're trying to track down the cause. The error happens in our pure Python code and the segfault happens in the libtcl8.5 shared library. i compiled 1.4.1 from sources on freebsd-7.4 and 8.2 ... help-about works fine ... it also has tk/tcl-8.5.9 i didn't compile/install on centos/suse/slackware let me know if you guys want me to try poking around with those boxes i tend to run online updates regularly, freebsd are updated daily --- latest rasmol-2.7.2.1.1.13/jmol-11.8.24 also works nicely on freebsd-7.4 .. 8.2 is little whacky c ya alvin http://Linux-1U.net/BioChem -- What Every C/C++ and Fortran developer Should Know! Read this article and learn how Intel has extended the reach of its next-generation tools to help Windows* and Linux* C/C++ and Fortran developers boost performance applications - including clusters. http://p.sf.net/sfu/intel-dev2devmay ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
