Re: [PyMOL] running pse file in batch mode

2013-03-08 Thread Thomas Holder
Hi Jon,

there is no need to convert the pse file into a script, just write a short 
script which loads the pse file in the beginning.

load session.pse
scene 001, recall
viewport 800, 600
png scene001.png, ray=1

You can run that in batch mode.

Cheers,
  Thomas

On Mar 6, 2013, at 4:11 PM, Jonathan Grimes jonat...@strubi.ox.ac.uk wrote:
   I've have a pse file with a number of scenes defined.   i would like to 
   run the pse file without the gui…..but then select scenes via the external
   gui window….and render……
 
   can i do this akin to batch mode ???   or can i convert the pse file into 
   a pmol script ??
 
   each scene will take 30mins to render
   i would also like to write out the scene as a vrml file…...i gave up after 
 an hour 
   at the graphics machine.
 
many thanks for your help
 
   jon
 
 Dr. Jonathan M. Grimes, 
 NDM Senior Reseach Fellow
 University Research Lecturer
 Division of Structural Biology
 Wellcome Trust Centre for Human Genetics
 University of Oxford
 Roosevelt Drive,
 Oxford OX3 7BN, UK
 
 Email: jonat...@strubi.ox.ac.uk, Web: www.strubi.ox.ac.uk 
 Tel: (+44) - 1865 - 287561, FAX: (+44) - 1865 - 287547   

-- 
Thomas Holder
PyMOL Developer
Schrödinger Contractor


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[PyMOL] running pse file in batch mode

2013-03-06 Thread Jonathan Grimes

   I've have a pse file with a number of scenes defined.   i would like to 
   run the pse file without the gui…..but then select scenes via the external
   gui window….and render……
 
   can i do this akin to batch mode ???   or can i convert the pse file into 
   a pmol script ??

   each scene will take 30mins to render
   i would also like to write out the scene as a vrml file…...i gave up after 
an hour 
   at the graphics machine.

many thanks for your help

   jon


   
Dr. Jonathan M. Grimes, 
NDM Senior Reseach Fellow
University Research Lecturer
Division of Structural Biology
Wellcome Trust Centre for Human Genetics
University of Oxford
Roosevelt Drive,
Oxford OX3 7BN, UK

Email: jonat...@strubi.ox.ac.uk, Web: www.strubi.ox.ac.uk 
Tel: (+44) - 1865 - 287561, FAX: (+44) - 1865 - 287547   




--
Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester  
Wave(TM): Endpoint Security, Q1 2013 and remains a good choice in the  
endpoint security space. For insight on selecting the right partner to 
tackle endpoint security challenges, access the full report. 
http://p.sf.net/sfu/symantec-dev2dev
___
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