[Qgis-user] Problem with SDA4PP/Linked Statistical Display

2009-12-08 Thread Agustin Lobo

Dear Volkan,
Thanks for SDA4PP.
When I try to run the Linked Statistical Display in SDA4PP (0.141) (R 2.10)
(QGIS 1.3.0 from ubuntu jaunty binaries) I get the following error
despite having the package rJava installed (also: note that rJava is
not listed among the dependencies):

Traceback (most recent call last):
  File "/home/alobo/.qgis//python/plugins/SDA4PP/sda4pp.py", line 163, in 
doIplotTool

d = iplot.IplotTool(self.iface)
  File "/home/alobo/.qgis//python/plugins/SDA4PP/iplot.py", line 64, in __init__
self.readInputFile()
  File "/home/alobo/.qgis//python/plugins/SDA4PP/iplot.py", line 357, in 
readInputFile

errorChecking = sda4ppLoadRpackage.readLib("iplot")
  File "/home/alobo/.qgis//python/plugins/SDA4PP/sda4ppLoadRpackage.py", line 
57, in readLib

result += loadIplot(r)
  File "/home/alobo/.qgis//python/plugins/SDA4PP/sda4ppLoadRpackage.py", line 
137, in loadIplot

if (r.require("iplots")[0]):
  File "/usr/local/lib/python2.6/dist-packages/rpy2/robjects/__init__.py", line 
422, in __call__

res = super(RFunction, self).__call__(*new_args, **new_kwargs)
RRuntimeError: Error: package 'rJava' could not be loaded

Thanks,

Agus

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Re: [Qgis-user] Problem with SDA4PP/Linked Statistical Display

2009-12-09 Thread Volkan Kepoglu

updated with ver. 0.142, could you try that if it is fixed?

1. added loading of rJava package function
2. changed the style of loading of iplot package: first checks the package
installed or not
and then loads the package but skips to control the package whether it is
loaded or not,
because, most probably, i think that there is a bug for iplots package. even
it is loaded, sometimes do not return true.
for this reason, i prefered not to control the library whether loaded or
not.

On Tue, Dec 8, 2009 at 9:30 PM, Agustin Lobo [via OSGeo.org] <
ml-node+4134711-2016065...@n2.nabble.com
> wrote:

> Dear Volkan,
> Thanks for SDA4PP.
> When I try to run the Linked Statistical Display in SDA4PP (0.141) (R 2.10)
>
> (QGIS 1.3.0 from ubuntu jaunty binaries) I get the following error
> despite having the package rJava installed (also: note that rJava is
> not listed among the dependencies):
>
> Traceback (most recent call last):
>File "/home/alobo/.qgis//python/plugins/SDA4PP/sda4pp.py", line 163, in
> doIplotTool
>  d = iplot.IplotTool(self.iface)
>File "/home/alobo/.qgis//python/plugins/SDA4PP/iplot.py", line 64, in
> __init__
>  self.readInputFile()
>File "/home/alobo/.qgis//python/plugins/SDA4PP/iplot.py", line 357, in
> readInputFile
>  errorChecking = sda4ppLoadRpackage.readLib("iplot")
>File "/home/alobo/.qgis//python/plugins/SDA4PP/sda4ppLoadRpackage.py",
> line
> 57, in readLib
>  result += loadIplot(r)
>File "/home/alobo/.qgis//python/plugins/SDA4PP/sda4ppLoadRpackage.py",
> line
> 137, in loadIplot
>  if (r.require("iplots")[0]):
>File "/usr/local/lib/python2.6/dist-packages/rpy2/robjects/__init__.py",
> line
> 422, in __call__
>  res = super(RFunction, self).__call__(*new_args, **new_kwargs)
> RRuntimeError: Error: package 'rJava' could not be loaded
>
> Thanks,
>
> Agus
>
> ___
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> email]
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> http://n2.nabble.com/Problem-with-SDA4PP-Linked-Statistical-Display-tp4134711p4134711.html
> To unsubscribe from Quantum GIS, click here< (link removed) =>.
>
>
>


-- 
Regards,
Volkan Osman Kepoglu
PhD Candidate
GGIT Department in METU,
http:/ggit.metu.edu.tr

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Re: [Qgis-user] Problem with SDA4PP/Linked Statistical Display

2009-12-09 Thread Anne Ghisla
On Wed, 2009-12-09 at 04:17 -0800, Volkan Kepoglu wrote:
> updated with ver. 0.142, could you try that if it is fixed?
> 
> 
> 1. added loading of rJava package function
> 2. changed the style of loading of iplot package: first checks the
> package installed or not
> and then loads the package but skips to control the package whether it
> is loaded or not,
> because, most probably, i think that there is a bug for iplots
> package. even it is loaded, sometimes do not return true.
> for this reason, i prefered not to control the library whether loaded
> or not.

Hi Volkan, list,

sounds like the ade4 load failure for HomeRange_plugin 
http://sourceforge.net/tracker/?func=detail&aid=2830501&group_id=48422&atid=453021

does the require(iplots) work on R?

if so, feel free to reopen the ticket on rpy2 trac.

HTH,
Anne

> On Tue, Dec 8, 2009 at 9:30 PM, Agustin Lobo [via OSGeo.org] <[hidden
> email]> wrote:
> Dear Volkan, 
> Thanks for SDA4PP. 
> When I try to run the Linked Statistical Display in SDA4PP
> (0.141) (R 2.10) 
> (QGIS 1.3.0 from ubuntu jaunty binaries) I get the following
> error 
> despite having the package rJava installed (also: note that
> rJava is 
> not listed among the dependencies): 
> 
> Traceback (most recent call last): 
>File "/home/alobo/.qgis//python/plugins/SDA4PP/sda4pp.py",
> line 163, in 
> doIplotTool 
>  d = iplot.IplotTool(self.iface) 
>File "/home/alobo/.qgis//python/plugins/SDA4PP/iplot.py",
> line 64, in __init__ 
>  self.readInputFile() 
>File "/home/alobo/.qgis//python/plugins/SDA4PP/iplot.py",
> line 357, in 
> readInputFile 
>  errorChecking = sda4ppLoadRpackage.readLib("iplot") 
>File
> "/home/alobo/.qgis//python/plugins/SDA4PP/sda4ppLoadRpackage.py", 
> line 
> 57, in readLib 
>  result += loadIplot(r) 
>File
> "/home/alobo/.qgis//python/plugins/SDA4PP/sda4ppLoadRpackage.py", 
> line 
> 137, in loadIplot 
>  if (r.require("iplots")[0]): 
>File
> "/usr/local/lib/python2.6/dist-packages/rpy2/robjects/__init__.py", 
> line 
> 422, in __call__ 
>  res = super(RFunction, self).__call__(*new_args,
> **new_kwargs) 
> RRuntimeError: Error: package 'rJava' could not be loaded 
> 
> Thanks, 
> 
> Agus 
> 
> ___ 
> Qgis-user mailing list 
> [hidden email] 
>     http://lists.osgeo.org/mailman/listinfo/qgis-user
> 
> 
> 
> -- 
> Regards,
> Volkan Osman Kepoglu
> PhD Candidate
> GGIT Department in METU,
> http:/ggit.metu.edu.tr
> 
> 
> 
> __
> View this message in context: Re: [Qgis-user] Problem with
> SDA4PP/Linked Statistical Display
> Sent from the qgis-user mailing list archive at Nabble.com.
> ___
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> Qgis-user@lists.osgeo.org
> http://lists.osgeo.org/mailman/listinfo/qgis-user



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Re: [Qgis-user] Problem with SDA4PP/Linked Statistical Display

2009-12-09 Thread Giovanni Manghi
On Wed, 2009-12-09 at 04:17 -0800, Volkan Kepoglu wrote:
> updated with ver. 0.142, could you try that if it is fixed?


Hi Volkan,
I jut updated the plugin but I still get the error message (using Ubuntu
9.10, qgis trunk and R 2.10)


I noticed also a few glitches in the plugin gui under linux, do you want
me to send you a few screenshots?


Thanks in advance

-- Giovanni --


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Re: [Qgis-user] Problem with SDA4PP/Linked Statistical Display

2009-12-09 Thread Volkan Kepoglu
yes, off course, please send.

is it exactly the same error message?

On Wed, Dec 9, 2009 at 2:26 PM, Giovanni Manghi
wrote:

> On Wed, 2009-12-09 at 04:17 -0800, Volkan Kepoglu wrote:
> > updated with ver. 0.142, could you try that if it is fixed?
>
>
> Hi Volkan,
> I jut updated the plugin but I still get the error message (using Ubuntu
> 9.10, qgis trunk and R 2.10)
>
>
> I noticed also a few glitches in the plugin gui under linux, do you want
> me to send you a few screenshots?
>
>
> Thanks in advance
>
> -- Giovanni --
>
>
>


-- 
Regards,
Volkan Osman Kepoglu
PhD Candidate
GGIT Department in METU,
http:/ggit.metu.edu.tr
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Re: [Qgis-user] Problem with SDA4PP/Linked Statistical Display

2009-12-09 Thread Volkan Kepoglu
On Wed, Dec 9, 2009 at 2:24 PM, Anne Ghisla  wrote:

> On Wed, 2009-12-09 at 04:17 -0800, Volkan Kepoglu wrote:
> > updated with ver. 0.142, could you try that if it is fixed?
> >
> >
> > 1. added loading of rJava package function
> > 2. changed the style of loading of iplot package: first checks the
> > package installed or not
> > and then loads the package but skips to control the package whether it
> > is loaded or not,
> > because, most probably, i think that there is a bug for iplots
> > package. even it is loaded, sometimes do not return true.
> > for this reason, i prefered not to control the library whether loaded
> > or not.
>
> Hi Volkan, list,
>
> sounds like the ade4 load failure for HomeRange_plugin
>
> http://sourceforge.net/tracker/?func=detail&aid=2830501&group_id=48422&atid=453021
>
> does the require(iplots) work on R?
>
>
the real problem is that i could not produce the same error in every time.
sometimes it works and sometimes not.


> if so, feel free to reopen the ticket on rpy2 trac.
>
> HTH,
> Anne
>
> > On Tue, Dec 8, 2009 at 9:30 PM, Agustin Lobo [via OSGeo.org] <[hidden
> > email]> wrote:
> > Dear Volkan,
> > Thanks for SDA4PP.
> > When I try to run the Linked Statistical Display in SDA4PP
> > (0.141) (R 2.10)
> > (QGIS 1.3.0 from ubuntu jaunty binaries) I get the following
> > error
> > despite having the package rJava installed (also: note that
> > rJava is
> > not listed among the dependencies):
> >
> > Traceback (most recent call last):
> >File "/home/alobo/.qgis//python/plugins/SDA4PP/sda4pp.py",
> > line 163, in
> > doIplotTool
> >  d = iplot.IplotTool(self.iface)
> >File "/home/alobo/.qgis//python/plugins/SDA4PP/iplot.py",
> > line 64, in __init__
> >  self.readInputFile()
> >File "/home/alobo/.qgis//python/plugins/SDA4PP/iplot.py",
> > line 357, in
> > readInputFile
> >  errorChecking = sda4ppLoadRpackage.readLib("iplot")
> >File
> > "/home/alobo/.qgis//python/plugins/SDA4PP/sda4ppLoadRpackage.py",
> line
> > 57, in readLib
> >  result += loadIplot(r)
> >File
> > "/home/alobo/.qgis//python/plugins/SDA4PP/sda4ppLoadRpackage.py",
> line
> > 137, in loadIplot
> >  if (r.require("iplots")[0]):
> >File
> >
> "/usr/local/lib/python2.6/dist-packages/rpy2/robjects/__init__.py", line
> > 422, in __call__
> >  res = super(RFunction, self).__call__(*new_args,
> > **new_kwargs)
> > RRuntimeError: Error: package 'rJava' could not be loaded
> >
> >     Thanks,
> >
> > Agus
> >
> > ___
> > Qgis-user mailing list
> > [hidden email]
> > http://lists.osgeo.org/mailman/listinfo/qgis-user
> >
> >
> >
> > --
> > Regards,
> > Volkan Osman Kepoglu
> > PhD Candidate
> > GGIT Department in METU,
> > http:/ggit.metu.edu.tr
> >
> >
> >
> > __
> > View this message in context: Re: [Qgis-user] Problem with
> > SDA4PP/Linked Statistical Display
> > Sent from the qgis-user mailing list archive at Nabble.com.
> > ___
> > Qgis-user mailing list
> > Qgis-user@lists.osgeo.org
>
>
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Re: [Qgis-user] Problem with SDA4PP/Linked Statistical Display

2009-12-09 Thread Anne Ghisla
On Wed, 2009-12-09 at 14:51 +0200, Volkan Kepoglu wrote:
> On Wed, Dec 9, 2009 at 2:24 PM, Anne Ghisla 
> wrote:
> On Wed, 2009-12-09 at 04:17 -0800, Volkan Kepoglu wrote:
> > updated with ver. 0.142, could you try that if it is fixed?
> >
> >
> > 1. added loading of rJava package function
> > 2. changed the style of loading of iplot package: first checks the
> > package installed or not
> > and then loads the package but skips to control the package whether
> it
> > is loaded or not,
> > because, most probably, i think that there is a bug for iplots
> > package. even it is loaded, sometimes do not return true.
> > for this reason, i prefered not to control the library whether
> loaded
> > or not.
> 
> 
> Hi Volkan, list,
> 
> sounds like the ade4 load failure for HomeRange_plugin
> http://sourceforge.net/tracker/?func=detail&aid=2830501&group_id=48422&atid=453021
> 
> does the require(iplots) work on R?
> 
> 
> the real problem is that i could not produce the same error in every
> time.
> sometimes it works and sometimes not.

Same for me and users that report the problem. Only thing for ade4, I
encountered it mainly on Windows, and R alone showed no problems. It can
be a rpy2 version issue. Unfortunately, extensive testing has not been
done. Let me know how I can help.

my 2 cents.. 
Anne



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Re: [Qgis-user] Problem with SDA4PP/Linked Statistical Display

2009-12-09 Thread Volkan Kepoglu
my rpy version is 2.0.6, maybe we can test our code results at the same
time.

>>> import rpy2
>>> import rpy2.robjects as robjects
>>> print(rpy2.__version__)
2.0.6
>>> print(robjects.r)

platform: i386-pc-mingw32
arch: i386
os: mingw32
system: i386, mingw32
status:
major: 2
minor: 9.0
year: 2009
month: 04
day: 17
svn rev: 48333
language: R
version.string: R version 2.9.0 (2009-04-17)
>>> r = robjects.r
>>> r.require("iplots")[0]
True
>>> r.require("iplots")

>>> r.require("iplots").r_repr()
'TRUE'
>>> r.require("ade4")[0] # not installed yet
False
>>> # so, now, the system is working pefect

python 2.5.2
winXP sp3 64bit

On Wed, Dec 9, 2009 at 3:02 PM, Anne Ghisla  wrote:

> On Wed, 2009-12-09 at 14:51 +0200, Volkan Kepoglu wrote:
> > On Wed, Dec 9, 2009 at 2:24 PM, Anne Ghisla 
> > wrote:
> > On Wed, 2009-12-09 at 04:17 -0800, Volkan Kepoglu wrote:
> > > updated with ver. 0.142, could you try that if it is fixed?
> > >
> > >
> > > 1. added loading of rJava package function
> > > 2. changed the style of loading of iplot package: first checks the
> > > package installed or not
> > > and then loads the package but skips to control the package whether
> > it
> > > is loaded or not,
> > > because, most probably, i think that there is a bug for iplots
> > > package. even it is loaded, sometimes do not return true.
> > > for this reason, i prefered not to control the library whether
> > loaded
> > > or not.
> >
> >
> > Hi Volkan, list,
> >
> > sounds like the ade4 load failure for HomeRange_plugin
> >
> http://sourceforge.net/tracker/?func=detail&aid=2830501&group_id=48422&atid=453021
> >
> > does the require(iplots) work on R?
> >
> >
> > the real problem is that i could not produce the same error in every
> > time.
> > sometimes it works and sometimes not.
>
> Same for me and users that report the problem. Only thing for ade4, I
> encountered it mainly on Windows, and R alone showed no problems. It can
> be a rpy2 version issue. Unfortunately, extensive testing has not been
> done. Let me know how I can help.
>
> my 2 cents..
> Anne
>
>


-- 
Regards,
Volkan Osman Kepoglu
PhD Candidate
GGIT Department in METU,
http:/ggit.metu.edu.tr
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Re: [Qgis-user] Problem with SDA4PP/Linked Statistical Display

2009-12-09 Thread Volkan Kepoglu
>
> I noticed also a few glitches in the plugin gui under linux, do you want
>> me to send you a few screenshots?
>>
>>
>> Thanks in advance
>>
>> -- Giovanni --
>>
>>
>>
thanks a lot for reminding me to look at the plugin gui under linux.

I will fix all in the new revision.

volkan.
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Re: [Qgis-user] Problem with SDA4PP/Linked Statistical Display

2009-12-09 Thread Anne Ghisla
Apologises for long email..

On up-to-date Debian Squeeze:

>>> import rpy2
>>> import rpy2.robjects as robjects
>>> print(rpy2.__version__)
2.0.8
>>> print(robjects.r)

platform: i486-pc-linux-gnu
arch: i486
os: linux-gnu
system: i486, linux-gnu
status: 
major: 2
minor: 10.0
year: 2009
month: 10
day: 26
svn rev: 50208
language: R
version.string: R version 2.10.0 (2009-10-26)
>>> r = robjects.r
>>> r.require("iplots")[0] 
[I installed openjdk-6-jdk, as I've already installed other openjdk
packages. Loads fine in R, not in rpy2:]
Loading required package: iplots
Loading required package: rJava
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared library
'/usr/local/lib/R/site-library/rJava/libs/rJava.so':
  libjvm.so: cannot open shared object file: No such file or directory
Error : .onLoad failed in 'loadNamespace' for 'rJava'
Error: package 'rJava' could not be loaded
Traceback (most recent call last):
  File "", line 1, in 
  File "/usr/lib/python2.5/site-packages/rpy2/robjects/__init__.py",
line 423, in __call__
res = super(RFunction, self).__call__(*new_args, **new_kwargs)
rinterface.RRuntimeError: Error: package 'rJava' could not be loaded

>>> r.require("ade4")
Loading required package: ade4

Attaching package: 'ade4'


The following object(s) are masked from package:base :

 within 


>>> r.require("ade4")[0]
True
>>> 


On Windows XP Home sp3:

>>> import rpy2
>>> import rpy2.robjects as robjects
>>> print(rpy2.__version__)
2.0.3
>>> print(robjects.r)

platform: i486-pc-mingw32
arch: i386
os: mingw32
system: i386, mingw32
status: 
major: 2
minor: 8.0
year: 2008
month: 10
day: 20
svn rev: 46754
language: R
version.string: R version 2.10.0 (2009-10-26)
>>> r = robjects.r
>>> r.require("iplots")[0]
True
>>> r.require("ade4")[0]
True

HTH,
Anne

On Wed, 2009-12-09 at 15:10 +0200, Volkan Kepoglu wrote:
> my rpy version is 2.0.6, maybe we can test our code results at the
> same time.
> 
> 
> >>> import rpy2
> >>> import rpy2.robjects as robjects
> >>> print(rpy2.__version__)
> 2.0.6
> >>> print(robjects.r)
> 
> platform: i386-pc-mingw32
> arch: i386
> os: mingw32
> system: i386, mingw32
> status: 
> major: 2
> minor: 9.0
> year: 2009
> month: 04
> day: 17
> svn rev: 48333
> language: R
> version.string: R version 2.9.0 (2009-04-17)
> >>> r = robjects.r
> >>> r.require("iplots")[0]
> True
> >>> r.require("iplots")
> 
> >>> r.require("iplots").r_repr()
> 'TRUE'
> >>> r.require("ade4")[0] # not installed yet
> False
> >>> # so, now, the system is working pefect
> 
> 
> python 2.5.2
> winXP sp3 64bit
> 
> On Wed, Dec 9, 2009 at 3:02 PM, Anne Ghisla 
> wrote:
> On Wed, 2009-12-09 at 14:51 +0200, Volkan Kepoglu wrote:
> > On Wed, Dec 9, 2009 at 2:24 PM, Anne Ghisla
> 
> > wrote:
> > On Wed, 2009-12-09 at 04:17 -0800, Volkan Kepoglu wrote:
> > > updated with ver. 0.142, could you try that if it is
> fixed?
> > >
> > >
> > > 1. added loading of rJava package function
> > > 2. changed the style of loading of iplot package: first
> checks the
> > > package installed or not
> > > and then loads the package but skips to control the
> package whether
> > it
> > > is loaded or not,
> > > because, most probably, i think that there is a bug for
> iplots
> > > package. even it is loaded, sometimes do not return true.
> > > for this reason, i prefered not to control the library
> whether
> > loaded
> > > or not.
> >
> >
> > Hi Volkan, list,
> >
> > sounds like the ade4 load failure for HomeRange_plugin
> >
> 
> http://sourceforge.net/tracker/?func=detail&aid=2830501&group_id=48422&atid=453021
> >
> > does the require(iplots) work on R?
> >
> >
> > the real problem is that i could not produce the same error
> in every
> > time.
> > sometimes it works and sometimes not.
> 
> 
> Same for me and users that report the problem. Only thing for
> ade4, I
> encountered it mainly on Windows, and R alone showed no
> problems. It can
> be a rpy2 version issue. Unfortunately, extensive testing has
> not been
> done. Let me know how I can help.
> 
> my 2 cents..
> Anne
> 
> 
> 
> 
> -- 
> Regards,
> Volkan Osman Kepoglu
> PhD Candidate
> GGIT Department in METU,
> http:/ggit.metu.edu.tr
> 



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Re: [Qgis-user] Problem with SDA4PP/Linked Statistical Display

2009-12-09 Thread Agustin Lobo

Sorry I cannot test this further until next weekend.
So far the only difference with the new version is that
I get "a formal complaint" on lacking rJava in a popup window instead of
the list of python errors. But rJava is installed
and running fine as far as I can tell (which is not a lot as
I rarely use rJava).
Thanks for your work.

Agus

Volkan Kepoglu wrote:

updated with ver. 0.142, could you try that if it is fixed?

1. added loading of rJava package function
2. changed the style of loading of iplot package: first checks the 
package installed or not
and then loads the package but skips to control the package whether it 
is loaded or not,
because, most probably, i think that there is a bug for iplots 
package. even it is loaded, sometimes do not return true.
for this reason, i prefered not to control the library whether loaded or 
not.


On Tue, Dec 8, 2009 at 9:30 PM, Agustin Lobo [via OSGeo.org] <[hidden 
email] 
<http://n2.nabble.com/user/SendEmail.jtp?type=node&node=4139061&i=0>> wrote:


Dear Volkan,
Thanks for SDA4PP.
When I try to run the Linked Statistical Display in SDA4PP (0.141)
(R 2.10)
(QGIS 1.3.0 from ubuntu jaunty binaries) I get the following error
despite having the package rJava installed (also: note that rJava is
not listed among the dependencies):

Traceback (most recent call last):
   File "/home/alobo/.qgis//python/plugins/SDA4PP/sda4pp.py", line
163, in
doIplotTool
 d = iplot.IplotTool(self.iface)
   File "/home/alobo/.qgis//python/plugins/SDA4PP/iplot.py", line
64, in __init__
 self.readInputFile()
   File "/home/alobo/.qgis//python/plugins/SDA4PP/iplot.py", line
357, in
readInputFile
 errorChecking = sda4ppLoadRpackage.readLib("iplot")
   File
"/home/alobo/.qgis//python/plugins/SDA4PP/sda4ppLoadRpackage.py", line
57, in readLib
 result += loadIplot(r)
   File
"/home/alobo/.qgis//python/plugins/SDA4PP/sda4ppLoadRpackage.py", line
137, in loadIplot
 if (r.require("iplots")[0]):
   File
"/usr/local/lib/python2.6/dist-packages/rpy2/robjects/__init__.py",
line
422, in __call__
 res = super(RFunction, self).__call__(*new_args, **new_kwargs)
RRuntimeError: Error: package 'rJava' could not be loaded

Thanks,

Agus

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--
Regards,
Volkan Osman Kepoglu
PhD Candidate
GGIT Department in METU,
http:/ggit.metu.edu.tr <http://ggit.metu.edu.tr>

------------
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Re: [Qgis-user] Problem with SDA4PP/Linked Statistical Display

2009-12-09 Thread Volkan Kepoglu
1. tested code:

import rpy2
import rpy2.robjects as robjects
print(rpy2.__version__)
print(robjects.r)
r = robjects.r
r.require("iplots")[0]
r.require("iplots")
r.require("iplots").r_repr()
r.require("ade4")[0]

2. I am testing the code in the ms-dos prompt with python itself, and it is
ok, the result is

C:\temp>python rpy2_iplots.py
2.0.6

platform: i386-pc-mingw32
arch: i386
os: mingw32
system: i386, mingw32
status:
major: 2
minor: 9.0
year: 2009
month: 04
day: 17
svn rev: 48333
language: R
version.string: R version 2.9.0 (2009-04-17)
Loading required package: iplots
Loading required package: rJava
Warning messages:
1: package 'iplots' was built under R version 2.9.1
2: package 'rJava' was built under R version 2.9.1
Loading required package: ade4

Attaching package: 'ade4'


The following object(s) are masked from package:base :

 within

Warning message:
package 'ade4' was built under R version 2.9.2

C:\temp>

Anne: ade4 package is working very well in my environment.

3. BUT, now tested with pywin32, the pythonwin is crashed.

maybe the problem is related with pywin32, not rpy2.

On Wed, Dec 9, 2009 at 4:37 PM, Agustin Lobo  wrote:

> Sorry I cannot test this further until next weekend.
> So far the only difference with the new version is that
> I get "a formal complaint" on lacking rJava in a popup window instead of
> the list of python errors. But rJava is installed
> and running fine as far as I can tell (which is not a lot as
> I rarely use rJava).
> Thanks for your work.
>
> Agus
>
> Volkan Kepoglu wrote:
>
>> updated with ver. 0.142, could you try that if it is fixed?
>>
>> 1. added loading of rJava package function
>> 2. changed the style of loading of iplot package: first checks the package
>> installed or not
>> and then loads the package but skips to control the package whether it is
>> loaded or not,
>> because, most probably, i think that there is a bug for iplots package.
>> even it is loaded, sometimes do not return true.
>> for this reason, i prefered not to control the library whether loaded or
>> not.
>>
>> On Tue, Dec 8, 2009 at 9:30 PM, Agustin Lobo [via OSGeo.org] <[hidden
>> email] <
>> http://n2.nabble.com/user/SendEmail.jtp?type=node&node=4139061&i=0>>
>> wrote:
>>
>>Dear Volkan,
>>Thanks for SDA4PP.
>>When I try to run the Linked Statistical Display in SDA4PP (0.141)
>>(R 2.10)
>>(QGIS 1.3.0 from ubuntu jaunty binaries) I get the following error
>>despite having the package rJava installed (also: note that rJava is
>>not listed among the dependencies):
>>
>>Traceback (most recent call last):
>>   File "/home/alobo/.qgis//python/plugins/SDA4PP/sda4pp.py", line
>>163, in
>>doIplotTool
>> d = iplot.IplotTool(self.iface)
>>   File "/home/alobo/.qgis//python/plugins/SDA4PP/iplot.py", line
>>64, in __init__
>> self.readInputFile()
>>   File "/home/alobo/.qgis//python/plugins/SDA4PP/iplot.py", line
>>357, in
>>readInputFile
>> errorChecking = sda4ppLoadRpackage.readLib("iplot")
>>   File
>>"/home/alobo/.qgis//python/plugins/SDA4PP/sda4ppLoadRpackage.py", line
>>57, in readLib
>> result += loadIplot(r)
>>   File
>>"/home/alobo/.qgis//python/plugins/SDA4PP/sda4ppLoadRpackage.py", line
>>137, in loadIplot
>> if (r.require("iplots")[0]):
>>   File
>>"/usr/local/lib/python2.6/dist-packages/rpy2/robjects/__init__.py",
>>line
>>422, in __call__
>> res = super(RFunction, self).__call__(*new_args, **new_kwargs)
>>RRuntimeError: Error: package 'rJava' could not be loaded
>>
>>Thanks,
>>
>>Agus
>>
>>___
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>>
>>http://lists.osgeo.org/mailman/listinfo/qgis-user
>>
>>
>>
>>
>> --
>> Regards,
>> Volkan Osman Kepoglu
>> PhD Candidate
>> GGIT Department in METU,
>> http:/ggit.metu.edu.tr <http://ggit.metu.edu.tr>
>>
>> 
>> View this message in context: Re: [Qgis-user] Problem with SDA4PP/Linked
>> Statistical Display <
>> http://n2.nabble.com/Problem-with-SDA4PP-Linked-Statistical-Display-tp4134711p4139061.html
>> >
>> Sent from the qgis-user mailing list archive <
>> http://n2.nabble.com/qgis-user-f2036571.html> at Nabble.com.
>>
>>
>> 
>>
>> ___
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>> Qgis-user@lists.osgeo.org
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>>
>
>


-- 
Regards,
Volkan Osman Kepoglu
PhD Candidate
GGIT Department in METU,
http:/ggit.metu.edu.tr
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Re: [Qgis-user] Problem with SDA4PP/Linked Statistical Display

2009-12-09 Thread Volkan Kepoglu
completed in rev. 0.144. please update the plugin.

have a fun with new gui.
volkan

On Wed, Dec 9, 2009 at 4:03 PM, Volkan Kepoglu  wrote:

> I noticed also a few glitches in the plugin gui under linux, do you want
>>> me to send you a few screenshots?
>>>
>>>
>>> Thanks in advance
>>>
>>> -- Giovanni --
>>>
>>>
>>>
> thanks a lot for reminding me to look at the plugin gui under linux.
>
> I will fix all in the new revision.
>
> volkan.
>



-- 
Regards,
Volkan Osman Kepoglu
PhD Candidate
GGIT Department in METU,
http:/ggit.metu.edu.tr
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Re: [Qgis-user] Problem with SDA4PP/Linked Statistical Display

2009-12-09 Thread Paolo Cavallini

Please note: the upgrade seems not to be clean. I keep on having the plugin
marked as upgradeable, even after the upgrade. This has already happened in
the past.
Thanks Volkan!

On Wed, 9 Dec 2009 23:21:34 +0200, Volkan Kepoglu 
wrote:
> completed in rev. 0.144. please update the plugin.
> 
> have a fun with new gui.

-- 
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Re: [Qgis-user] Problem with SDA4PP/Linked Statistical Display

2009-12-09 Thread Volkan Kepoglu
there was a previous reply from borys about the subject: He explained that

Yes, you need to restart qgis to update the status of this particular
plugin.

It's because the Installer is able to reload only the __init__.py file (not
the
whole plugin) and in this plugin metadata is stored in a nested module
which
is not to be reloaded unless you restart QGIS. We're working on complete
plugin reloading while upgrading.

or maybe i should changed my __init__.py file. but this will affect my
release procedure python script, so if i have find more time, i'll do.

On Wed, Dec 9, 2009 at 11:52 PM, Paolo Cavallini wrote:

>
> Please note: the upgrade seems not to be clean. I keep on having the plugin
> marked as upgradeable, even after the upgrade. This has already happened in
> the past.
> Thanks Volkan!
>
> On Wed, 9 Dec 2009 23:21:34 +0200, Volkan Kepoglu 
> wrote:
> > completed in rev. 0.144. please update the plugin.
> >
> > have a fun with new gui.
>
> --
> http://faunalia.it/pc
>



-- 
Regards,
Volkan Osman Kepoglu
PhD Candidate
GGIT Department in METU,
http:/ggit.metu.edu.tr
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Re: [Qgis-user] Problem with SDA4PP/Linked Statistical Display

2009-12-11 Thread Volkan Kepoglu
finally, cleaning the upgrade and the glitches in the plugin gui under linux
is completed - i think.

please, update the plugin to rev. 0,151.

regards,
volkan.

On Wed, Dec 9, 2009 at 11:52 PM, Paolo Cavallini wrote:

>
> Please note: the upgrade seems not to be clean. I keep on having the plugin
> marked as upgradeable, even after the upgrade. This has already happened in
> the past.
> Thanks Volkan!
>
>
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Re: [Qgis-user] Problem with SDA4PP/Linked Statistical Display

2009-12-13 Thread Agustin Lobo

But I still get the error on ubuntu 9.04 despite having
rJava available in R (2.10):
Traceback (most recent call last):
  File "/home/alobo/.qgis//python/plugins/SDA4PP/sda4pp.py", line 163, in 
doIplotTool

d = iplot.IplotTool(self.iface)
  File "/home/alobo/.qgis//python/plugins/SDA4PP/iplot.py", line 64, in __init__
self.readInputFile()
  File "/home/alobo/.qgis//python/plugins/SDA4PP/iplot.py", line 357, in 
readInputFile

errorChecking = sda4ppLoadRpackage.readLib("iplot")
  File "/home/alobo/.qgis//python/plugins/SDA4PP/sda4ppLoadRpackage.py", line 
58, in readLib

result += loadIplot(r)
  File "/home/alobo/.qgis//python/plugins/SDA4PP/sda4ppLoadRpackage.py", line 
143, in loadIplot

r.require("iplots")
  File "/usr/local/lib/python2.6/dist-packages/rpy2/robjects/__init__.py", line 
422, in __call__

res = super(RFunction, self).__call__(*new_args, **new_kwargs)
RRuntimeError: Error: package 'rJava' could not be loaded


Agus


Volkan Kepoglu wrote:
finally, cleaning the upgrade and the glitches in the plugin gui under 
linux is completed - i think. 


please, update the plugin to rev. 0,151.

regards,
volkan.

On Wed, Dec 9, 2009 at 11:52 PM, Paolo Cavallini > wrote:



Please note: the upgrade seems not to be clean. I keep on having the
plugin
marked as upgradeable, even after the upgrade. This has already
happened in
the past.
Thanks Volkan!




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Re: [Qgis-user] Problem with SDA4PP/Linked Statistical Display

2009-12-14 Thread Volkan Kepoglu
I assumed that the problem is related with pywin32 but your OS is ubuntu, so
the problem should be related with either rpy2 or iplot package in R or with
java.

actually, i do not know the solution.

regards,
volkan.


On Sun, Dec 13, 2009 at 12:44 PM, Agustin Lobo wrote:

> But I still get the error on ubuntu 9.04 despite having
> rJava available in R (2.10):
>
> Traceback (most recent call last):
>  File "/home/alobo/.qgis//python/plugins/SDA4PP/sda4pp.py", line 163, in
> doIplotTool
>d = iplot.IplotTool(self.iface)
>  File "/home/alobo/.qgis//python/plugins/SDA4PP/iplot.py", line 64, in
> __init__
>self.readInputFile()
>  File "/home/alobo/.qgis//python/plugins/SDA4PP/iplot.py", line 357, in
> readInputFile
>errorChecking = sda4ppLoadRpackage.readLib("iplot")
>  File "/home/alobo/.qgis//python/plugins/SDA4PP/sda4ppLoadRpackage.py",
> line 58, in readLib
>result += loadIplot(r)
>  File "/home/alobo/.qgis//python/plugins/SDA4PP/sda4ppLoadRpackage.py",
> line 143, in loadIplot
>r.require("iplots")
>
>  File "/usr/local/lib/python2.6/dist-packages/rpy2/robjects/__init__.py",
> line 422, in __call__
>res = super(RFunction, self).__call__(*new_args, **new_kwargs)
> RRuntimeError: Error: package 'rJava' could not be loaded
>
>
> Agus
>
>
> Volkan Kepoglu wrote:
>
>> finally, cleaning the upgrade and the glitches in the plugin gui under
>> linux is completed - i think.
>> please, update the plugin to rev. 0,151.
>>
>> regards,
>> volkan.
>>
>> On Wed, Dec 9, 2009 at 11:52 PM, Paolo Cavallini 
>> > cavall...@faunalia.it>> wrote:
>>
>>
>>Please note: the upgrade seems not to be clean. I keep on having the
>>plugin
>>marked as upgradeable, even after the upgrade. This has already
>>happened in
>>the past.
>>Thanks Volkan!
>>
>>
>> 
>>
>> ___
>> Qgis-user mailing list
>> Qgis-user@lists.osgeo.org
>> http://lists.osgeo.org/mailman/listinfo/qgis-user
>>
>
>
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Re: [Qgis-user] Problem with SDA4PP/Linked Statistical Display

2009-12-15 Thread Agustin Lobo

This might be a clue:
require(iplots) does not work from within the manageR console
(Carson?):
> require(iplots)
Error: package 'rJava' could not be loaded

while it works from a normal R console
(ubuntu 9.04, R. 2.10)

Agus

Volkan Kepoglu wrote:
I assumed that the problem is related with pywin32 but your OS is 
ubuntu, so the problem should be related with either rpy2 or iplot 
package in R or with java.


actually, i do not know the solution.

regards,
volkan.
 

On Sun, Dec 13, 2009 at 12:44 PM, Agustin Lobo > wrote:


But I still get the error on ubuntu 9.04 despite having
rJava available in R (2.10):

Traceback (most recent call last):
 File "/home/alobo/.qgis//python/plugins/SDA4PP/sda4pp.py", line
163, in doIplotTool
   d = iplot.IplotTool(self.iface)
 File "/home/alobo/.qgis//python/plugins/SDA4PP/iplot.py", line 64,
in __init__
   self.readInputFile()
 File "/home/alobo/.qgis//python/plugins/SDA4PP/iplot.py", line 357,
in readInputFile
   errorChecking = sda4ppLoadRpackage.readLib("iplot")
 File
"/home/alobo/.qgis//python/plugins/SDA4PP/sda4ppLoadRpackage.py",
line 58, in readLib
   result += loadIplot(r)
 File
"/home/alobo/.qgis//python/plugins/SDA4PP/sda4ppLoadRpackage.py",
line 143, in loadIplot
   r.require("iplots")

 File
"/usr/local/lib/python2.6/dist-packages/rpy2/robjects/__init__.py",
line 422, in __call__
   res = super(RFunction, self).__call__(*new_args, **new_kwargs)
RRuntimeError: Error: package 'rJava' could not be loaded


Agus


Volkan Kepoglu wrote:

finally, cleaning the upgrade and the glitches in the plugin gui
under linux is completed - i think.
please, update the plugin to rev. 0,151.

regards,
volkan.

On Wed, Dec 9, 2009 at 11:52 PM, Paolo Cavallini
mailto:cavall...@faunalia.it>
>>
wrote:


   Please note: the upgrade seems not to be clean. I keep on
having the
   plugin
   marked as upgradeable, even after the upgrade. This has already
   happened in
   the past.
   Thanks Volkan!




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Re: [Qgis-user] Problem with SDA4PP/Linked Statistical Display

2009-12-16 Thread Carson Farmer
This might be because Rpy2 doesn't seem to look in all the same places 
that R does... what about specifying the library location when using 
library... though this isn't a solution for the plugin, it might help to 
narrow down the problem...


?library

Carson



This might be a clue:
require(iplots) does not work from within the manageR console
(Carson?):
> require(iplots)
Error: package 'rJava' could not be loaded

while it works from a normal R console
(ubuntu 9.04, R. 2.10)

Agus

Volkan Kepoglu wrote:
I assumed that the problem is related with pywin32 but your OS is 
ubuntu, so the problem should be related with either rpy2 or iplot 
package in R or with java.


actually, i do not know the solution.

regards,
volkan.
 

On Sun, Dec 13, 2009 at 12:44 PM, Agustin Lobo > wrote:


But I still get the error on ubuntu 9.04 despite having
rJava available in R (2.10):

Traceback (most recent call last):
 File "/home/alobo/.qgis//python/plugins/SDA4PP/sda4pp.py", line
163, in doIplotTool
   d = iplot.IplotTool(self.iface)
 File "/home/alobo/.qgis//python/plugins/SDA4PP/iplot.py", line 64,
in __init__
   self.readInputFile()
 File "/home/alobo/.qgis//python/plugins/SDA4PP/iplot.py", line 357,
in readInputFile
   errorChecking = sda4ppLoadRpackage.readLib("iplot")
 File
"/home/alobo/.qgis//python/plugins/SDA4PP/sda4ppLoadRpackage.py",
line 58, in readLib
   result += loadIplot(r)
 File
"/home/alobo/.qgis//python/plugins/SDA4PP/sda4ppLoadRpackage.py",
line 143, in loadIplot
   r.require("iplots")

 File
"/usr/local/lib/python2.6/dist-packages/rpy2/robjects/__init__.py",
line 422, in __call__
   res = super(RFunction, self).__call__(*new_args, **new_kwargs)
RRuntimeError: Error: package 'rJava' could not be loaded


Agus


Volkan Kepoglu wrote:

finally, cleaning the upgrade and the glitches in the plugin gui
under linux is completed - i think.
please, update the plugin to rev. 0,151.

regards,
volkan.

On Wed, Dec 9, 2009 at 11:52 PM, Paolo Cavallini
mailto:cavall...@faunalia.it>
>>
wrote:


   Please note: the upgrade seems not to be clean. I keep on
having the
   plugin
   marked as upgradeable, even after the upgrade. This has 
already

   happened in
   the past.
   Thanks Volkan!






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--
Carson J. Q. Farmer
ISSP Doctoral Fellow
National Centre for Geocomputation (NCG),
National University of Ireland, Maynooth,
Email: carson.far...@gmail.com
Web:   http://www.carsonfarmer.com/
  http://www.ftools.ca/

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Re: [Qgis-user] Problem with SDA4PP/Linked Statistical Display

2009-12-16 Thread Agustin Lobo

Then it seems that this shared problem between manageR and SDA4PP
has to be consulted in the rpy list. I let you do it.
On my side, I'm making some tests. I've found this weird behavior:

Outside manageR:

> require(rJava)
Loading required package: rJava
> search()
 [1] ".GlobalEnv""package:rJava" "package:stats"
 [4] "package:graphics"  "package:grDevices" "package:utils"
 [7] "package:datasets"  "package:methods"   "Autoloads"
[10] "package:base"

Within manageR:
> require(rJava)
Loading required package: rJava
> search()
[1] ".GlobalEnv""package:stats" "package:graphics"
[4] "package:grDevices" "package:utils" "package:datasets"
[7] "package:methods"   "Autoloads" "package:base"

and also within manageR:
> library(rJava, lib.loc="/usr/local/lib/R/site-library")
Error: package/namespace load failed for 'rJava'

which works fine outside manageR.

Agus

Carson Farmer wrote:
This might be because Rpy2 doesn't seem to look in all the same places 
that R does... what about specifying the library location when using 
library... though this isn't a solution for the plugin, it might help to 
narrow down the problem...


?library

Carson



This might be a clue:
require(iplots) does not work from within the manageR console
(Carson?):
> require(iplots)
Error: package 'rJava' could not be loaded

while it works from a normal R console
(ubuntu 9.04, R. 2.10)

Agus

Volkan Kepoglu wrote:
I assumed that the problem is related with pywin32 but your OS is 
ubuntu, so the problem should be related with either rpy2 or iplot 
package in R or with java.


actually, i do not know the solution.

regards,
volkan.
 

On Sun, Dec 13, 2009 at 12:44 PM, Agustin Lobo > wrote:


But I still get the error on ubuntu 9.04 despite having
rJava available in R (2.10):

Traceback (most recent call last):
 File "/home/alobo/.qgis//python/plugins/SDA4PP/sda4pp.py", line
163, in doIplotTool
   d = iplot.IplotTool(self.iface)
 File "/home/alobo/.qgis//python/plugins/SDA4PP/iplot.py", line 64,
in __init__
   self.readInputFile()
 File "/home/alobo/.qgis//python/plugins/SDA4PP/iplot.py", line 357,
in readInputFile
   errorChecking = sda4ppLoadRpackage.readLib("iplot")
 File
"/home/alobo/.qgis//python/plugins/SDA4PP/sda4ppLoadRpackage.py",
line 58, in readLib
   result += loadIplot(r)
 File
"/home/alobo/.qgis//python/plugins/SDA4PP/sda4ppLoadRpackage.py",
line 143, in loadIplot
   r.require("iplots")

 File
"/usr/local/lib/python2.6/dist-packages/rpy2/robjects/__init__.py",
line 422, in __call__
   res = super(RFunction, self).__call__(*new_args, **new_kwargs)
RRuntimeError: Error: package 'rJava' could not be loaded


Agus


Volkan Kepoglu wrote:

finally, cleaning the upgrade and the glitches in the plugin gui
under linux is completed - i think.
please, update the plugin to rev. 0,151.

regards,
volkan.

On Wed, Dec 9, 2009 at 11:52 PM, Paolo Cavallini
mailto:cavall...@faunalia.it>
>>
wrote:


   Please note: the upgrade seems not to be clean. I keep on
having the
   plugin
   marked as upgradeable, even after the upgrade. This has 
already

   happened in
   the past.
   Thanks Volkan!






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