Re: [Rd] Dependency 'sma' is not available

2009-10-02 Thread Duncan Murdoch 

Martin Morgan wrote:

zong-pei@imm.ox.ac.uk wrote:
  

So packages like beadarray and arrayQualityMetrics
cannot be installed.



The sma author no longer wishes to maintain this package. The packges
beadarray and arrayQualityMetrics are Bioconductor packages that depend
on sma indirectly through other packages. The other packages are being
revised to no longer depend on sma, but this has not yet been completed.
The workaround is to manually install sma from its archive: download

  http://cran.fhcrc.org/src/contrib/Archive/sma/sma_0.5.15.tar.gz

and install.packages("sma_0.5.15.tar.gz", repos=NULL).

beadarray and arrayQualityMetrics are Bioconductor packages, so please
follow up on the Bioconductor mailing list

  http://bioconductor.org/docs/mailList.html

  


This message is mainly for Zong-pei:

I don't know the circumstances or license for sma, but one of the 
advantages of open source is that someone else could take over 
maintenance of sma if it is open source and the original author is no 
longer interested.  You should think about doing it, or recruiting 
someone with the necessary skills if you don't have them.


Duncan Murdoch


Martin



  

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Re: [Rd] Dependency 'sma' is not available

2009-10-01 Thread Martin Morgan 
zong-pei@imm.ox.ac.uk wrote:
> So packages like beadarray and arrayQualityMetrics
> cannot be installed.

The sma author no longer wishes to maintain this package. The packges
beadarray and arrayQualityMetrics are Bioconductor packages that depend
on sma indirectly through other packages. The other packages are being
revised to no longer depend on sma, but this has not yet been completed.
The workaround is to manually install sma from its archive: download

  http://cran.fhcrc.org/src/contrib/Archive/sma/sma_0.5.15.tar.gz

and install.packages("sma_0.5.15.tar.gz", repos=NULL).

beadarray and arrayQualityMetrics are Bioconductor packages, so please
follow up on the Bioconductor mailing list

  http://bioconductor.org/docs/mailList.html

Martin



> 
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> R-devel@r-project.org mailing list
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-- 
Martin Morgan
Computational Biology / Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N.
PO Box 19024 Seattle, WA 98109

Location: Arnold Building M1 B861
Phone: (206) 667-2793

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[Rd] Dependency 'sma' is not available

2009-10-01 Thread zong-pei . han 
So packages like beadarray and arrayQualityMetrics
cannot be installed.

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