[Rd] Matrix package: compilation error
Trying to compile the package Matrix_0.9975-11.tar.gz with newest R-2.5.0 alpha (2007-03-31 r40986) on FreeBSD 7.0-CURRENT (i386) I get the following error: - R CMD INSTALL Matrix_0.9975-11.tar.gz * Installing to library '/usr/local/lib/R/library' * Installing *source* package 'Matrix' ... ** libs ** arch - "Makefile", line 10: Missing dependency operator "Makefile", line 12: Need an operator "Makefile", line 14: Need an operator make: fatal errors encountered -- cannot continue ERROR: compilation failed for package 'Matrix' ** Removing '/usr/local/lib/R/library/Matrix' - Under FreeBSD I have installed the LAPACK package (3.0.2) with library at location /usr/local/lib/liblapack.so.4 Is it possible that the Makefile of package Matrix fails because of that? Any help is appreciated, Rainer Hurling __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] Matrix package: compilation error
This is because of the GNUism in Matrix/src/Makefile ## get rid of this, once we have 'Depends: R (>= 2.5.0)': ifeq (, $(findstring -lRlapack, $(LAPACK_LIBS))) SOURCES_LAPACK = else SOURCES_LAPACK = zpotf2.f zpotrf.f zlacgv.f endif I guess you know what you need to do to fix it for BSD make? On Sat, 31 Mar 2007, Rainer Hurling wrote: > Trying to compile the package Matrix_0.9975-11.tar.gz with newest > R-2.5.0 alpha (2007-03-31 r40986) on FreeBSD 7.0-CURRENT (i386) I get > the following error: > > - > R CMD INSTALL Matrix_0.9975-11.tar.gz > * Installing to library '/usr/local/lib/R/library' > * Installing *source* package 'Matrix' ... > ** libs > ** arch - > "Makefile", line 10: Missing dependency operator > "Makefile", line 12: Need an operator > "Makefile", line 14: Need an operator > make: fatal errors encountered -- cannot continue > ERROR: compilation failed for package 'Matrix' > ** Removing '/usr/local/lib/R/library/Matrix' > - > > > Under FreeBSD I have installed the LAPACK package (3.0.2) with library > at location > > /usr/local/lib/liblapack.so.4 > > Is it possible that the Makefile of package Matrix fails because of that? Not used unless you asked for it during R's configure. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UKFax: +44 1865 272595 __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] Matrix package: compilation error
> "Rainer" == Rainer Hurling <[EMAIL PROTECTED]> > on Sat, 31 Mar 2007 19:03:44 +0200 writes: Rainer> Trying to compile the package Rainer> Matrix_0.9975-11.tar.gz Rainer> with newest R-2.5.0 alpha Rainer> (2007-03-31 r40986) on FreeBSD 7.0-CURRENT (i386) does FreeBSD use a make that is 'GNU make' compatible? Matrix/DESCRIPTION has a line which says -- SystemRequirements: GNU make -- Regards, Martin Maechler, ETH Zurich Rainer> I get the following error: Rainer> - Rainer> R CMD INSTALL Matrix_0.9975-11.tar.gz Rainer> * Installing to library '/usr/local/lib/R/library' Rainer> * Installing *source* package 'Matrix' ... Rainer> ** libs Rainer> ** arch - Rainer> "Makefile", line 10: Missing dependency operator Rainer> "Makefile", line 12: Need an operator Rainer> "Makefile", line 14: Need an operator Rainer> make: fatal errors encountered -- cannot continue Rainer> ERROR: compilation failed for package 'Matrix' Rainer> ** Removing '/usr/local/lib/R/library/Matrix' Rainer> - Rainer> Under FreeBSD I have installed the LAPACK package (3.0.2) with library Rainer> at location Rainer> /usr/local/lib/liblapack.so.4 Rainer> Is it possible that the Makefile of package Matrix fails because of that? Rainer> Any help is appreciated, Rainer> Rainer Hurling Rainer> __ Rainer> R-devel@r-project.org mailing list Rainer> https://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] Matrix package: compilation error
Thanks, Brian and Martin, I think you are both right, Matrix tries to use BSD make (/usr/bin/make) on FreeBSD instead of GNU make (/usr/local/bin/gmake). Sorry, but I don't know how to persuade the configure script to use gmake :-( Rainer Prof Brian Ripley schrieb: > This is because of the GNUism in Matrix/src/Makefile > > ## get rid of this, once we have 'Depends: R (>= 2.5.0)': > ifeq (, $(findstring -lRlapack, $(LAPACK_LIBS))) > SOURCES_LAPACK = > else > SOURCES_LAPACK = zpotf2.f zpotrf.f zlacgv.f > endif > > I guess you know what you need to do to fix it for BSD make? > > On Sat, 31 Mar 2007, Rainer Hurling wrote: > >> Trying to compile the package Matrix_0.9975-11.tar.gz with newest >> R-2.5.0 alpha (2007-03-31 r40986) on FreeBSD 7.0-CURRENT (i386) I get >> the following error: >> >> - >> R CMD INSTALL Matrix_0.9975-11.tar.gz >> * Installing to library '/usr/local/lib/R/library' >> * Installing *source* package 'Matrix' ... >> ** libs >> ** arch - >> "Makefile", line 10: Missing dependency operator >> "Makefile", line 12: Need an operator >> "Makefile", line 14: Need an operator >> make: fatal errors encountered -- cannot continue >> ERROR: compilation failed for package 'Matrix' >> ** Removing '/usr/local/lib/R/library/Matrix' >> - >> >> >> Under FreeBSD I have installed the LAPACK package (3.0.2) with library >> at location >> >> /usr/local/lib/liblapack.so.4 >> >> Is it possible that the Makefile of package Matrix fails because of that? > > Not used unless you asked for it during R's configure. > __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] Matrix package: compilation error
Hi Rainer, check the following post for an alternative solution: http://tolstoy.newcastle.edu.au/R/help/06/01/18908.html if you would like more detailed instructions, let me know. Andrew On Sat, Mar 31, 2007 at 10:10:45PM +0200, Rainer Hurling wrote: > Thanks, Brian and Martin, > > I think you are both right, Matrix tries to use BSD make (/usr/bin/make) > on FreeBSD instead of GNU make (/usr/local/bin/gmake). > > Sorry, but I don't know how to persuade the configure script to use > gmake :-( > > Rainer > > > Prof Brian Ripley schrieb: > > This is because of the GNUism in Matrix/src/Makefile > > > > ## get rid of this, once we have 'Depends: R (>= 2.5.0)': > > ifeq (, $(findstring -lRlapack, $(LAPACK_LIBS))) > > SOURCES_LAPACK = > > else > > SOURCES_LAPACK = zpotf2.f zpotrf.f zlacgv.f > > endif > > > > I guess you know what you need to do to fix it for BSD make? > > > > On Sat, 31 Mar 2007, Rainer Hurling wrote: > > > >> Trying to compile the package Matrix_0.9975-11.tar.gz with newest > >> R-2.5.0 alpha (2007-03-31 r40986) on FreeBSD 7.0-CURRENT (i386) I get > >> the following error: > >> > >> - > >> R CMD INSTALL Matrix_0.9975-11.tar.gz > >> * Installing to library '/usr/local/lib/R/library' > >> * Installing *source* package 'Matrix' ... > >> ** libs > >> ** arch - > >> "Makefile", line 10: Missing dependency operator > >> "Makefile", line 12: Need an operator > >> "Makefile", line 14: Need an operator > >> make: fatal errors encountered -- cannot continue > >> ERROR: compilation failed for package 'Matrix' > >> ** Removing '/usr/local/lib/R/library/Matrix' > >> - > >> > >> > >> Under FreeBSD I have installed the LAPACK package (3.0.2) with library > >> at location > >> > >> /usr/local/lib/liblapack.so.4 > >> > >> Is it possible that the Makefile of package Matrix fails because of that? > > > > Not used unless you asked for it during R's configure. > > > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel -- Andrew Robinson Department of Mathematics and StatisticsTel: +61-3-8344-9763 University of Melbourne, VIC 3010 Australia Fax: +61-3-8344-4599 http://www.ms.unimelb.edu.au/~andrewpr http://blogs.mbs.edu/fishing-in-the-bay/ __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] Matrix package: compilation error
Thank you Andrew, 'setenv MAKE gmake' did it. Now I can use latest spdep package :-) Rainer Andrew Robinson schrieb: > Hi Rainer, > > check the following post for an alternative solution: > > http://tolstoy.newcastle.edu.au/R/help/06/01/18908.html > > if you would like more detailed instructions, let me know. > > Andrew > > > On Sat, Mar 31, 2007 at 10:10:45PM +0200, Rainer Hurling wrote: >> Thanks, Brian and Martin, >> >> I think you are both right, Matrix tries to use BSD make (/usr/bin/make) >> on FreeBSD instead of GNU make (/usr/local/bin/gmake). >> >> Sorry, but I don't know how to persuade the configure script to use >> gmake :-( >> >> Rainer >> >> >> Prof Brian Ripley schrieb: >>> This is because of the GNUism in Matrix/src/Makefile >>> >>> ## get rid of this, once we have 'Depends: R (>= 2.5.0)': >>> ifeq (, $(findstring -lRlapack, $(LAPACK_LIBS))) >>> SOURCES_LAPACK = >>> else >>> SOURCES_LAPACK = zpotf2.f zpotrf.f zlacgv.f >>> endif >>> >>> I guess you know what you need to do to fix it for BSD make? >>> >>> On Sat, 31 Mar 2007, Rainer Hurling wrote: >>> Trying to compile the package Matrix_0.9975-11.tar.gz with newest R-2.5.0 alpha (2007-03-31 r40986) on FreeBSD 7.0-CURRENT (i386) I get the following error: - R CMD INSTALL Matrix_0.9975-11.tar.gz * Installing to library '/usr/local/lib/R/library' * Installing *source* package 'Matrix' ... ** libs ** arch - "Makefile", line 10: Missing dependency operator "Makefile", line 12: Need an operator "Makefile", line 14: Need an operator make: fatal errors encountered -- cannot continue ERROR: compilation failed for package 'Matrix' ** Removing '/usr/local/lib/R/library/Matrix' - Under FreeBSD I have installed the LAPACK package (3.0.2) with library at location /usr/local/lib/liblapack.so.4 Is it possible that the Makefile of package Matrix fails because of that? >>> Not used unless you asked for it during R's configure. >>> >> __ >> R-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-devel > __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] Matrix package: compilation error
Rainer Hurling wrote:
> Thanks, Brian and Martin,
>
> I think you are both right, Matrix tries to use BSD make (/usr/bin/make)
> on FreeBSD instead of GNU make (/usr/local/bin/gmake).
>
> Sorry, but I don't know how to persuade the configure script to use
> gmake :-(
easy -
mkdir ~/mynewbin
ln -s /usr/local/bin/gmake ~/mynewbin/make
export PATH=${HOME}/mynewbin:${PATH}
Then run "R CMD INSTALL ..." as you did.
and afterwards, "rm -rf ~/mynewbin". (I hope I don't need to explain
what the 3 lines above do...)
HTL
>
> Rainer
>
>
> Prof Brian Ripley schrieb:
>> This is because of the GNUism in Matrix/src/Makefile
>>
>> ## get rid of this, once we have 'Depends: R (>= 2.5.0)':
>> ifeq (, $(findstring -lRlapack, $(LAPACK_LIBS)))
>> SOURCES_LAPACK =
>> else
>> SOURCES_LAPACK = zpotf2.f zpotrf.f zlacgv.f
>> endif
>>
>> I guess you know what you need to do to fix it for BSD make?
>>
>> On Sat, 31 Mar 2007, Rainer Hurling wrote:
>>
>>> Trying to compile the package Matrix_0.9975-11.tar.gz with newest
>>> R-2.5.0 alpha (2007-03-31 r40986) on FreeBSD 7.0-CURRENT (i386) I get
>>> the following error:
>>>
>>> -
>>> R CMD INSTALL Matrix_0.9975-11.tar.gz
>>> * Installing to library '/usr/local/lib/R/library'
>>> * Installing *source* package 'Matrix' ...
>>> ** libs
>>> ** arch -
>>> "Makefile", line 10: Missing dependency operator
>>> "Makefile", line 12: Need an operator
>>> "Makefile", line 14: Need an operator
>>> make: fatal errors encountered -- cannot continue
>>> ERROR: compilation failed for package 'Matrix'
>>> ** Removing '/usr/local/lib/R/library/Matrix'
>>> -
>>>
>>>
>>> Under FreeBSD I have installed the LAPACK package (3.0.2) with library
>>> at location
>>>
>>> /usr/local/lib/liblapack.so.4
>>>
>>> Is it possible that the Makefile of package Matrix fails because of that?
>> Not used unless you asked for it during R's configure.
>>
>
> __
> R-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
__
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Re: [Rd] Matrix package: compilation error
Thank you Hin-Tak Leung,
on Saturday, 31th, Brian Ripley and Martin Maechler showed me the use of
gmake without linking make against gmake:
setenv MAKE gmake
R CMD INSTALL Matrix_0.9975-11.tar.gz
unsetenv MAKE
R CMD INSTALL spdep_0.4-2.tar.gz
Everything works fine now. However, on my wishlist is a general way to
integrate "the search for gmake on systems like FreeBSD" in the
configure script of packages like Matrix ... ;-)
Rainer Hurling
Hin-Tak Leung schrieb:
> Rainer Hurling wrote:
>> Thanks, Brian and Martin,
>>
>> I think you are both right, Matrix tries to use BSD make
>> (/usr/bin/make) on FreeBSD instead of GNU make (/usr/local/bin/gmake).
>>
>> Sorry, but I don't know how to persuade the configure script to use
>> gmake :-(
>
> easy -
>
> mkdir ~/mynewbin
> ln -s /usr/local/bin/gmake ~/mynewbin/make
> export PATH=${HOME}/mynewbin:${PATH}
>
> Then run "R CMD INSTALL ..." as you did.
>
> and afterwards, "rm -rf ~/mynewbin". (I hope I don't need to explain
> what the 3 lines above do...)
>
> HTL
>
>
>>
>> Rainer
>>
>>
>> Prof Brian Ripley schrieb:
>>> This is because of the GNUism in Matrix/src/Makefile
>>>
>>> ## get rid of this, once we have 'Depends: R (>= 2.5.0)':
>>> ifeq (, $(findstring -lRlapack, $(LAPACK_LIBS)))
>>> SOURCES_LAPACK =
>>> else
>>> SOURCES_LAPACK = zpotf2.f zpotrf.f zlacgv.f
>>> endif
>>>
>>> I guess you know what you need to do to fix it for BSD make?
>>>
>>> On Sat, 31 Mar 2007, Rainer Hurling wrote:
>>>
Trying to compile the package Matrix_0.9975-11.tar.gz with newest
R-2.5.0 alpha (2007-03-31 r40986) on FreeBSD 7.0-CURRENT (i386) I get
the following error:
-
R CMD INSTALL Matrix_0.9975-11.tar.gz
* Installing to library '/usr/local/lib/R/library'
* Installing *source* package 'Matrix' ...
** libs
** arch -
"Makefile", line 10: Missing dependency operator
"Makefile", line 12: Need an operator
"Makefile", line 14: Need an operator
make: fatal errors encountered -- cannot continue
ERROR: compilation failed for package 'Matrix'
** Removing '/usr/local/lib/R/library/Matrix'
-
Under FreeBSD I have installed the LAPACK package (3.0.2) with library
at location
/usr/local/lib/liblapack.so.4
Is it possible that the Makefile of package Matrix fails because of
that?
>>> Not used unless you asked for it during R's configure.
>>>
>>
>> __
>> R-devel@r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-devel
>
__
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Re: [Rd] Matrix package: compilation error
Rainer Hurling wrote:
> Thank you Hin-Tak Leung,
>
> on Saturday, 31th, Brian Ripley and Martin Maechler showed me the use of
> gmake without linking make against gmake:
>
> setenv MAKE gmake
> R CMD INSTALL Matrix_0.9975-11.tar.gz
> unsetenv MAKE
> R CMD INSTALL spdep_0.4-2.tar.gz
>
> Everything works fine now. However, on my wishlist is a general way to
> integrate "the search for gmake on systems like FreeBSD" in the
> configure script of packages like Matrix ... ;-)
Hmm, you are using a csh-like shell. Just replace the "export" statement
below with the equivalent setenv statement:
setenv PATH ${HOME}/mynewbin:${PATH}
The PATH trick is also a useful thing to do if you have say,
multiple java JDK's, or other things.
> Hin-Tak Leung schrieb:
>> Rainer Hurling wrote:
>>> Thanks, Brian and Martin,
>>>
>>> I think you are both right, Matrix tries to use BSD make
>>> (/usr/bin/make) on FreeBSD instead of GNU make (/usr/local/bin/gmake).
>>>
>>> Sorry, but I don't know how to persuade the configure script to use
>>> gmake :-(
>>
>> easy -
>>
>> mkdir ~/mynewbin
>> ln -s /usr/local/bin/gmake ~/mynewbin/make
>> export PATH=${HOME}/mynewbin:${PATH}
>>
>> Then run "R CMD INSTALL ..." as you did.
>>
>> and afterwards, "rm -rf ~/mynewbin". (I hope I don't need to explain
>> what the 3 lines above do...)
>>
>> HTL
>>
>>
>>>
>>> Rainer
>>>
>>>
>>> Prof Brian Ripley schrieb:
This is because of the GNUism in Matrix/src/Makefile
## get rid of this, once we have 'Depends: R (>= 2.5.0)':
ifeq (, $(findstring -lRlapack, $(LAPACK_LIBS)))
SOURCES_LAPACK =
else
SOURCES_LAPACK = zpotf2.f zpotrf.f zlacgv.f
endif
I guess you know what you need to do to fix it for BSD make?
On Sat, 31 Mar 2007, Rainer Hurling wrote:
> Trying to compile the package Matrix_0.9975-11.tar.gz with newest
> R-2.5.0 alpha (2007-03-31 r40986) on FreeBSD 7.0-CURRENT (i386) I get
> the following error:
>
> -
> R CMD INSTALL Matrix_0.9975-11.tar.gz
> * Installing to library '/usr/local/lib/R/library'
> * Installing *source* package 'Matrix' ...
> ** libs
> ** arch -
> "Makefile", line 10: Missing dependency operator
> "Makefile", line 12: Need an operator
> "Makefile", line 14: Need an operator
> make: fatal errors encountered -- cannot continue
> ERROR: compilation failed for package 'Matrix'
> ** Removing '/usr/local/lib/R/library/Matrix'
> -
>
>
> Under FreeBSD I have installed the LAPACK package (3.0.2) with library
> at location
>
> /usr/local/lib/liblapack.so.4
>
> Is it possible that the Makefile of package Matrix fails because of
> that?
Not used unless you asked for it during R's configure.
>>>
>>> __
>>> R-devel@r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/r-devel
>>
__
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