[Rd] broken save(..., compress=xy)

2011-09-23 Thread Hervé Pagès 

Hi,

With current R devel and R 2.13.1:

 aa=1:5
 save(aa, file=aa.rda, compress=xy)
Error in identical(compress, gzip) || compress :
  invalid 'y' type in 'x || y'

Thanks!
H.

 sessionInfo()
R version 2.13.1 (2011-07-08)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_CA.UTF-8   LC_NUMERIC=C
 [3] LC_TIME=en_CA.UTF-8LC_COLLATE=en_CA.UTF-8
 [5] LC_MONETARY=C  LC_MESSAGES=en_CA.UTF-8
 [7] LC_PAPER=en_CA.UTF-8   LC_NAME=C
 [9] LC_ADDRESS=C   LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_CA.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats graphics  grDevices utils datasets  methods   base


--
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpa...@fhcrc.org
Phone:  (206) 667-5791
Fax:(206) 667-1319

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Re: [Rd] broken save(..., compress=xy)

2011-09-23 Thread Sarah Goslee 
Hi,


2011/9/23 Hervé Pagès hpa...@fhcrc.org:
 Hi,

 With current R devel and R 2.13.1:

 aa=1:5
 save(aa, file=aa.rda, compress=xy)
 Error in identical(compress, gzip) || compress :
  invalid 'y' type in 'x || y'

The options for compress are gzip bzip2 or xz (and not xy), at
least on my linux system. Are you sure you want xy?

Sarah

 Thanks!
 H.

 sessionInfo()
 R version 2.13.1 (2011-07-08)
 Platform: x86_64-unknown-linux-gnu (64-bit)

 locale:
  [1] LC_CTYPE=en_CA.UTF-8       LC_NUMERIC=C
  [3] LC_TIME=en_CA.UTF-8        LC_COLLATE=en_CA.UTF-8
  [5] LC_MONETARY=C              LC_MESSAGES=en_CA.UTF-8
  [7] LC_PAPER=en_CA.UTF-8       LC_NAME=C
  [9] LC_ADDRESS=C               LC_TELEPHONE=C
 [11] LC_MEASUREMENT=en_CA.UTF-8 LC_IDENTIFICATION=C

 attached base packages:
 [1] stats     graphics  grDevices utils     datasets  methods   base


 --


-- 
Sarah Goslee
http://www.functionaldiversity.org

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Re: [Rd] broken save(..., compress=xy)

2011-09-23 Thread Hervé Pagès 

On 11-09-23 11:02 AM, Sarah Goslee wrote:

Hi,


2011/9/23 Hervé Pagèshpa...@fhcrc.org:

Hi,

With current R devel and R 2.13.1:


aa=1:5
save(aa, file=aa.rda, compress=xy)

Error in identical(compress, gzip) || compress :
  invalid 'y' type in 'x || y'


The options for compress are gzip bzip2 or xz (and not xy), at
least on my linux system. Are you sure you want xy?


Right, I wanted xz, sorry... Maybe error handling could be improved
though so a typo in the input doesn't break the code?

Thanks,
H.



Sarah


Thanks!
H.


sessionInfo()

R version 2.13.1 (2011-07-08)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
  [1] LC_CTYPE=en_CA.UTF-8   LC_NUMERIC=C
  [3] LC_TIME=en_CA.UTF-8LC_COLLATE=en_CA.UTF-8
  [5] LC_MONETARY=C  LC_MESSAGES=en_CA.UTF-8
  [7] LC_PAPER=en_CA.UTF-8   LC_NAME=C
  [9] LC_ADDRESS=C   LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_CA.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats graphics  grDevices utils datasets  methods   base


--






--
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpa...@fhcrc.org
Phone:  (206) 667-5791
Fax:(206) 667-1319

__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] broken save(..., compress=xy)

2011-09-23 Thread Martin Maechler 
 Hervé Pagès hpa...@fhcrc.org
 on Fri, 23 Sep 2011 11:44:32 -0700 writes:

 On 11-09-23 11:02 AM, Sarah Goslee wrote:
 Hi,
 
 
 2011/9/23 Hervé Pagèshpa...@fhcrc.org:
 Hi,
 
 With current R devel and R 2.13.1:
 
 aa=1:5 save(aa, file=aa.rda, compress=xy)
 Error in identical(compress, gzip) || compress :
 invalid 'y' type in 'x || y'
 
 The options for compress are gzip bzip2 or xz (and
 not xy), at least on my linux system. Are you sure you
 want xy?

 Right, I wanted xz, sorry... Maybe error handling could
 be improved though so a typo in the input doesn't break
 the code?

well, what every  ' break the code '  means,
you are right that a more informative error message makes sense
here (though, the code now is slightly longer).
I've committed such a change {svn rev 57057}.

Martin

 Thanks, H.

 
 Sarah
 
 Thanks!  H.
 
 sessionInfo()
 R version 2.13.1 (2011-07-08) Platform:
 x86_64-unknown-linux-gnu (64-bit)
 
 locale: [1] LC_CTYPE=en_CA.UTF-8 LC_NUMERIC=C [3]
 LC_TIME=en_CA.UTF-8 LC_COLLATE=en_CA.UTF-8 [5]
 LC_MONETARY=C LC_MESSAGES=en_CA.UTF-8 [7]
 LC_PAPER=en_CA.UTF-8 LC_NAME=C [9] LC_ADDRESS=C
 LC_TELEPHONE=C [11] LC_MEASUREMENT=en_CA.UTF-8
 LC_IDENTIFICATION=C
 
 attached base packages: [1] stats graphics grDevices
 utils datasets methods base
 
 
 --
 



-- 
Hervé Pagès

 Program in Computational Biology Division of Public Health
 Sciences Fred Hutchinson Cancer Research Center 1100
 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA
 98109-1024

 E-mail: hpa...@fhcrc.org Phone: (206) 667-5791 Fax: (206)
 667-1319

 __
 R-devel@r-project.org mailing list
 https://stat.ethz.ch/mailman/listinfo/r-devel

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Re: [Rd] broken save(..., compress=xy)

2011-09-23 Thread Hervé Pagès 

Hi Martin,

On 11-09-23 04:12 PM, Martin Maechler wrote:

Hervé Pagèshpa...@fhcrc.org
 on Fri, 23 Sep 2011 11:44:32 -0700 writes:


   On 11-09-23 11:02 AM, Sarah Goslee wrote:
   Hi,
 
 
   2011/9/23 Hervé Pagèshpa...@fhcrc.org:
   Hi,
 
   With current R devel and R 2.13.1:
 
   aa=1:5 save(aa, file=aa.rda, compress=xy)
   Error in identical(compress, gzip) || compress :
   invalid 'y' type in 'x || y'
 
   The options for compress are gzip bzip2 or xz (and
   not xy), at least on my linux system. Are you sure you
   want xy?

   Right, I wanted xz, sorry... Maybe error handling could
   be improved though so a typo in the input doesn't break
   the code?

well, what every  ' break the code '  means,


break here means that the if statement in charge of examining
user input doesn't execute properly for some invalid input.


you are right that a more informative error message makes sense
here (though, the code now is slightly longer).
I've committed such a change {svn rev 57057}.


Thank you!

H.



Martin

   Thanks, H.

 
   Sarah
 
   Thanks!  H.
 
   sessionInfo()
   R version 2.13.1 (2011-07-08) Platform:
   x86_64-unknown-linux-gnu (64-bit)
 
   locale: [1] LC_CTYPE=en_CA.UTF-8 LC_NUMERIC=C [3]
   LC_TIME=en_CA.UTF-8 LC_COLLATE=en_CA.UTF-8 [5]
   LC_MONETARY=C LC_MESSAGES=en_CA.UTF-8 [7]
   LC_PAPER=en_CA.UTF-8 LC_NAME=C [9] LC_ADDRESS=C
   LC_TELEPHONE=C [11] LC_MEASUREMENT=en_CA.UTF-8
   LC_IDENTIFICATION=C
 
   attached base packages: [1] stats graphics grDevices
   utils datasets methods base
 
 
   --
 








--
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpa...@fhcrc.org
Phone:  (206) 667-5791
Fax:(206) 667-1319

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R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel