[R] Timestamp of exported files not updated when the file name is overwritten (ggsave)
Hi. I have a script in which I export some plots to a folder in my PC. The plots are exported with the function ggsave (in ggplot2). Whenever I re-run the code and export updated plots, the name of the exported file is overwritten (as expected) but the timestamp is not updated what turns it very difficult to locate them, sometimes. Any thought or solution for this issue? Thanks, David [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R-es] preg
La viñeta del paquete tiene ejemplos: library(tm) vignette(tm) El jue., 19 de marzo de 2015 a las 10:43, jbetancourt ( jbetanco...@iscmc.cmw.sld.cu) escribió: Estimados ?podrían enviarme un ejemplo en el que analicen un documento de texto con la librería library(tm) mis saludos cordiales jose [[alternative HTML version deleted]] ___ R-help-es mailing list R-help-es@r-project.org https://stat.ethz.ch/mailman/listinfo/r-help-es [[alternative HTML version deleted]] ___ R-help-es mailing list R-help-es@r-project.org https://stat.ethz.ch/mailman/listinfo/r-help-es
Re: [R] Which is better: Modifying an existing package or creating a new one?
I would consider a third option: suggest the changes to the package authors. The authors might include your modifications to the original package if they feel that it would improve their package. Otherwise go for option 2. Option 1 will be harder to maintain if you want benefit from the updates on the packages A, B, C, D, E. Best regards, ir. Thierry Onkelinx Instituut voor natuur- en bosonderzoek / Research Institute for Nature and Forest team Biometrie Kwaliteitszorg / team Biometrics Quality Assurance Kliniekstraat 25 1070 Anderlecht Belgium To call in the statistician after the experiment is done may be no more than asking him to perform a post-mortem examination: he may be able to say what the experiment died of. ~ Sir Ronald Aylmer Fisher The plural of anecdote is not data. ~ Roger Brinner The combination of some data and an aching desire for an answer does not ensure that a reasonable answer can be extracted from a given body of data. ~ John Tukey 2015-03-19 8:56 GMT+01:00 jpm miao miao...@gmail.com: Hi, Given that I frequently use A, B, C, D, E packages. In each of the 5 packages, I intend to modify one of the functions. Two ways: 1st: Modify A, B, C, D, E to A', B', C', D', E' Then I will use library(A') . library(E') instead of A, B, C, D, E. or Just keep the names A, B, C, D, E but modify the content 2nd: create a package F and add the five functions to the F package. For each of the 5 functions, a line library(A)... or library(E) is required. Then I will need library(F) when I create a new program. Which is a better way in terms of time consumption and code portability? If I move the codes to a new computer, which way will be easier? Any suggestion? Thanks, Miao [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Which is better: Modifying an existing package or creating a new one?
Hi, Given that I frequently use A, B, C, D, E packages. In each of the 5 packages, I intend to modify one of the functions. Two ways: 1st: Modify A, B, C, D, E to A', B', C', D', E' Then I will use library(A') . library(E') instead of A, B, C, D, E. or Just keep the names A, B, C, D, E but modify the content 2nd: create a package F and add the five functions to the F package. For each of the 5 functions, a line library(A)... or library(E) is required. Then I will need library(F) when I create a new program. Which is a better way in terms of time consumption and code portability? If I move the codes to a new computer, which way will be easier? Any suggestion? Thanks, Miao [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] how to get coefficient and scores of Principal component analysis in R?
Actually, the loadings are quite different from the coefficients. The loadings are simply correlations of the original values to the scores for a PCA factor. The coefficients, on the other hand, allow one to compute the scores. There is a coefficient for each variable. The coefficient is multiplied with the standardized variable and then added to the next coefficient multiplied by its standardized variable ets. The general formula http://r.789695.n4.nabble.com/file/n4704832/PCA_formula.jpg -- View this message in context: http://r.789695.n4.nabble.com/how-to-get-coefficient-and-scores-of-Principal-component-analysis-in-R-tp3245198p4704832.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] glm in hdlm?
I am following the example in the vignette for hdlm (p. 19), but I cannot
get it to to fit a logistic. For those who don't know the package, it
allows one to fit high dimensional data where the number of variables may
exceed the number of cases.
library(hdlm)
LMFUN - function(x,y) return(glm(y ~ x, family=binomial(link=logit)))
FUNCVFIT - function(x,y) return(cv.glmnet(x, y, family='binomial'))
set.seed(1234)
xx-matrix(runif(20*4),20,4) #20 cases, 4 variables
xx[,1]-xx[,1]+1:20
yy-c(0,0,0,1,0,1,1,0,1,0,1,0,1,0,1,1,1,1,1,1)
#ordinary glms are fitted with no problems with yy either factor or numeric
fit1-glm(as.factor(yy)~xx,family=binomial)
fit2-glm(yy~xx,family=binomial)
fit3-hdlm(as.factor(yy) ~ xx, LMFUN = LMFUN, FUNCVFIT = FUNCVFIT)
This produces the error:
Error in { :
task 1 failed - (list) object cannot be coerced to type 'double'
In addition: There were 11 warnings (use warnings() to see them)
=
fit4-hdlm(yy ~ xx, LMFUN = LMFUN, FUNCVFIT = FUNCVFIT)
This produces:
Error in { :
task 1 failed - (list) object cannot be coerced to type 'double'
In addition: Warning messages:
1: Option grouped=FALSE enforced in cv.glmnet, since 3 observations per
fold
2: Option grouped=FALSE enforced in cv.glmnet, since 3 observations per
fold
3: Option grouped=FALSE enforced in cv.glmnet, since 3 observations per
fold
4: Option grouped=FALSE enforced in cv.glmnet, since 3 observations per
fold
5: Option grouped=FALSE enforced in cv.glmnet, since 3 observations per
fold
6: Option grouped=FALSE enforced in cv.glmnet, since 3 observations per
fold
7: Option grouped=FALSE enforced in cv.glmnet, since 3 observations per
fold
8: Option grouped=FALSE enforced in cv.glmnet, since 3 observations per
fold
9: Option grouped=FALSE enforced in cv.glmnet, since 3 observations per
fold
10: Option grouped=FALSE enforced in cv.glmnet, since 3 observations per
fold
=
Please tell me how to fit the glm in hdlm. Thanks very much for any help.
Stan
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[R-es] preg
Estimados ?podr�an enviarme un ejemplo en el que analicen un documento de texto con la librer�a library(tm) mis saludos cordiales jose [[alternative HTML version deleted]] ___ R-help-es mailing list R-help-es@r-project.org https://stat.ethz.ch/mailman/listinfo/r-help-es
[R] glmnet: converting coefficients back to original scale
Dear R-help, I'm having trouble understanding how glmnet converts its coefficient estimates back to the original scale. Here's an example with ridge regression: library(glmnet) set.seed(1) n - 20 # sample size d - data.frame(x1 = rnorm(n, 1, 1), x2 = rnorm(n, 10, 2), y = rnorm(n, 1, 2)) # Sample means mx1 - mean(d$x1) mx2 - mean(d$x2) my - mean(d$y) # Scaling factors (1/n standard deviations) sx1 - sd(d$x1)*sqrt((n - 1)/n) sx2 - sd(d$x2)*sqrt((n - 1)/n) sy - sd(d$y)*sqrt((n - 1)/n) # Scaled variables d$x1s - (d$x1 - mx1)/sx1 d$x2s - (d$x2 - mx2)/sx2 d$ys - (d$y - my)/sy lam - 0.5 # lambda value # Using scaled variables (same result for standardize=TRUE and standardize=FALSE) glmnet1 - glmnet(as.matrix(d[, c(x1s, x2s)]), d$ys, alpha=0, lambda = lam) # Using unscaled variables glmnet2 - glmnet(as.matrix(d[, c(x1, x2)]), d$y, alpha=0, lambda=lam) coef(glmnet2) ## s0 ## (Intercept) 2.5658491 ## x1 0.3471199 ## x2 -0.1703715 # I want to calculate the glmnet2 coef estimates from the glmnet1 coef estimates. # The following attempts are based on rearrangement of # (y - my)/sy = beta1*(x1 - mx1)/sx1 + beta2*(x2 - mx2)/sx2 my - coef(glmnet1)[x1s, s0]*mx1*sy/sx1 - coef(glmnet1)[x2s, s0]*mx2*sy/sx2 # 2.430971 # Not the same as coef(glmnet2)[(Intercept), s0] coef(glmnet1)[x1s, s0]*sy/sx1 # 0.3096897 # Not the same as coef(glmnet2)[x1, s0] coef(glmnet1)[x2s, s0]*sy/sx2 # -0.1524043 # Not the same as coef(glmnet2)[x2, s0] ## I can apply a similar method (with centring of y instead of standardisation) to successfully get the coefficient estimates on the original scale given by lm.ridge in the MASS package. I would appreciate any help anyone can give on where I'm going wrong with glmnet. Thanks, Mark __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Order Bars in ggplot2 bar graph
Dear experts, I am trying to make a bar graph using ggplot2. I would like to define the order of my bars independently of alphabetical or numerical order. How can I do that. Here a simplified example of my code and comments(#) describing my problem: #Code start library(ggplot2) bar-ggplot(data,aes(Leaf,Av_Glands_cor,fill=Damage)) # The column Leaf contains the variable C_1, C_2 and C_Cot. R always plots the bars in the following orders : C_1 (closest to the y-axis), C_2, C_Cot # How do I have to modify my code that the order of the bars is: C_Cot, C_2, C_1? bar+stat_summary(fun.y=mean,geom=bar,position=dodge,colour=black)+ theme_bw()+ theme(text = element_text(size=15), axis.text.x = element_text(angle=90, vjust=1))+ stat_summary(fun.data=mean_cl_normal,geom=errorbar,position=position_dodge(width=0.9),width=0.4,colour=gray65)+ labs(x=Leaf,y=Average nr. glands corrected for leaf sz.,fill=Damage)+ scale_fill_manual(values=c(gray95, gray75, gray45, black)) #Code end Thank you very much, Michael Eisenring Eisenring Michael, Msc. PhD Student Federal Department of Economic Affairs, Education and Research EAER Institute of Sustainability Sciences ISS Biosafety Reckenholzstrasse 191, CH-8046 Z�rich Tel. +41 44 37 77181 Fax +41 44 37 77201 michael.eisenr...@agroscope.admin.chmailto:michael.eisenr...@agroscope.admin.ch www.agroscope.chhttp://www.agroscope.ch/ [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Order Bars in ggplot2 bar graph
You need to set the levels of the factor in the required order. data$Leaf - factor(data$Leaf, levels = c(C_Cot, C_2, C_1)) ir. Thierry Onkelinx Instituut voor natuur- en bosonderzoek / Research Institute for Nature and Forest team Biometrie Kwaliteitszorg / team Biometrics Quality Assurance Kliniekstraat 25 1070 Anderlecht Belgium To call in the statistician after the experiment is done may be no more than asking him to perform a post-mortem examination: he may be able to say what the experiment died of. ~ Sir Ronald Aylmer Fisher The plural of anecdote is not data. ~ Roger Brinner The combination of some data and an aching desire for an answer does not ensure that a reasonable answer can be extracted from a given body of data. ~ John Tukey 2015-03-19 10:06 GMT+01:00 michael.eisenr...@agroscope.admin.ch: Dear experts, I am trying to make a bar graph using ggplot2. I would like to define the order of my bars independently of alphabetical or numerical order. How can I do that. Here a simplified example of my code and comments(#) describing my problem: #Code start library(ggplot2) bar-ggplot(data,aes(Leaf,Av_Glands_cor,fill=Damage)) # The column Leaf contains the variable C_1, C_2 and C_Cot. R always plots the bars in the following orders : C_1 (closest to the y-axis), C_2, C_Cot # How do I have to modify my code that the order of the bars is: C_Cot, C_2, C_1? bar+stat_summary(fun.y=mean,geom=bar,position=dodge,colour=black)+ theme_bw()+ theme(text = element_text(size=15), axis.text.x = element_text(angle=90, vjust=1))+ stat_summary(fun.data=mean_cl_normal,geom=errorbar,position=position_dodge(width=0.9),width=0.4,colour=gray65)+ labs(x=Leaf,y=Average nr. glands corrected for leaf sz.,fill=Damage)+ scale_fill_manual(values=c(gray95, gray75, gray45, black)) #Code end Thank you very much, Michael Eisenring Eisenring Michael, Msc. PhD Student Federal Department of Economic Affairs, Education and Research EAER Institute of Sustainability Sciences ISS Biosafety Reckenholzstrasse 191, CH-8046 Zürich Tel. +41 44 37 77181 Fax +41 44 37 77201 michael.eisenr...@agroscope.admin.chmailto: michael.eisenr...@agroscope.admin.ch www.agroscope.chhttp://www.agroscope.ch/ [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] R Course in Dublin (April 15-17)
Details at http://insightsc.ie/training/r-statistical-software/ Antony Unwin University of Augsburg, Germany and Insight Statistical Consulting, Dublin, Ireland __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Tele_R - first experiences
Dear R community, some days ago Enric Cervera Mateu has installed an R client with instant messaging, which is usable very simple via the public name @Tele_R in the messenger Telegram. I have tested Tele_R and e.g. tried most of the examples from [1] W.N. Venables, D.M. Smith, R Core Team. An Introduction to R. R Core Team. iBooks. and of §1 of [2] B. Everitt, T. Hothorn. An R and S-plus Companion to Multivariate Analysis. Springer. All is working very good in this environment. I am very impressed. I like the possibility to use R without installation complications with my iPhone, iPad or HTC One. The answers are send very fast, the idea to use a chat for mathematics communication seems to be especially suited to beginners: direct dive in, OS as you like, working anywhere, talking over distance, communicate with your peers or students (share code or examples etc even during a lesson - if a beamer is not available) etc. I would like to thank Enric for his valuable work to make the great work of the R team accessible to smartphones and tablets. I think that Tele_R is a very comfortable tool for teaching and learning R at an undergraduate level. And I would like to hear about the experiences, opinions or ideas of other members of the R community with respect of the use of Tele_R. I hope that this is not the wrong list to say these words. Best, Wolfgang Lindner Leichlingen, Germany __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] not a Stata version 5-12 .dta file
doesn't just running this solve your problem? https://github.com/ajdamico/usgsd/blob/master/World%20Values%20Survey/download%20all%20microdata.R On Fri, Mar 20, 2015 at 12:04 AM, Nicole Ford nicole.f...@me.com wrote: Anthony, Thanks for this. The issue I am having is WVS didn’t save all of their stata files, it seems, as .dta. Further, the .rdata files are not loading correctly, either, giving me .Traceback or crashes R when I try to source it. I will poke around your link to see if it can provide any insight. ~n On Mar 19, 2015, at 9:09 PM, Anthony Damico ajdam...@gmail.com wrote: hi nicole, i have published easy to reproduce, well-documented code to download and then analyze every file from every wave of the world values survey here. the download automation script should solve your problem, or at least work around it :) http://www.asdfree.com/search/label/world%20values%20survey%20%28wvs%29 On Thu, Mar 19, 2015 at 6:09 PM, Nicole Ford nicole.f...@me.com wrote: the text didn’t send for the R data file erros. sorry about that. 2015-03-19 17:41:38.544 R[398:5728] Unable to simultaneously satisfy constraints: ( NSAutoresizingMaskLayoutConstraint:0x618966c0 h=-- v=-- H:|-(0)-[NSView:0x6032da20] (Names: '|':FIFinderView:0x6080003612c0 ), NSAutoresizingMaskLayoutConstraint:0x612881b0 h=-- v=-- H:[NSView:0x6032da20]-(0)-| (Names: '|':FIFinderView:0x6080003612c0 ), NSAutoresizingMaskLayoutConstraint:0x60a8c710 h=-- v=-- H:|-(0)-[FIFinderView:0x6080003612c0] (Names: '|':NSNavFinderViewFileBrowser:0x608000375fc0 ), NSAutoresizingMaskLayoutConstraint:0x6128eb50 h=-- v=-- H:[FIFinderView:0x6080003612c0]-(0)-| (Names: '|':NSNavFinderViewFileBrowser:0x608000375fc0 ), NSAutoresizingMaskLayoutConstraint:0x60c93fb0 h=-- v=-- H:[NSNavFinderViewFileBrowser:0x608000375fc0(585)], NSLayoutConstraint:0x6149d740 H:|-(0)-[NSView:0x60133ec0] (Names: '|':NSView:0x6032da20 ), NSLayoutConstraint:0x61489880 H:[NSView:0x60133ec0]-(0)-| (Names: '|':NSView:0x6032da20 ), NSLayoutConstraint:0x6109e280 H:[FILocationPopUp:0x603fda00(207)], NSLayoutConstraint:0x60a82760 NSView:0x60133ec0.centerX == FILocationPopUp:0x603fda00.centerX, NSLayoutConstraint:0x60e835c0 H:[FILocationPopUp:0x603fda00]-(=10)-[SGTSearchField:0x603bf800], NSLayoutConstraint:0x6069f2c0 H:[SGTSearchField:0x603bf800]-(11)-| (Names: '|':NSView:0x60133ec0 ), NSLayoutConstraint:0x606801e0 H:[SGTSearchField:0x603bf800(=218)] ) Will attempt to recover by breaking constraint NSLayoutConstraint:0x606801e0 H:[SGTSearchField:0x603bf800(=218)] Set the NSUserDefault NSConstraintBasedLayoutVisualizeMutuallyExclusiveConstraints to YES to have -[NSWindow visualizeConstraints:] automatically called when this happens. And/or, break on objc_exception_throw to catch this in the debugger. str(dat) chr [1:2] .Traceback WV3_Data_rdata_v_2014_09_21 ls(dat) Error in as.environment(pos) : no item called .Traceback on the search list dat [1] .Traceback WV3_Data_rdata_v_2014_09_21 sessionInfo() R version 3.1.3 (2015-03-09) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X 10.10.1 (Yosemite) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] readstata13_0.5-3 effects_3.0-3 lattice_0.20-30 lme4_1.1-7 Rcpp_0.11.2 Matrix_1.1-5 runjags_1.2.1-0 sm_2.2-5.4 [9] foreign_0.8-63car_2.0-25 loaded via a namespace (and not attached): [1] coda_0.16-1 colorspace_1.2-4 grid_3.1.3 MASS_7.3-39 mgcv_1.8-4 minqa_1.2.3 nlme_3.1-120 nloptr_1.0.0 nnet_7.3-9 [10] parallel_3.1.3 pbkrtest_0.4-2 quantreg_5.11SparseM_1.6 splines_3.1.3tools_3.1.3 On Mar 19, 2015, at 5:08 PM, Nicole Ford nicole.f...@me.com wrote: Ista, I am pulling multiple countries and multiple waves, but here is one country in one wave. I know if I can get one to work, I can get them all to work. I have used WVS data in the past and never encountered any issues, so I am at a loss here. Thanks again! http://www.worldvaluessurvey.org/WVSDocumentationWV3.jsp http://www.worldvaluessurvey.org/WVSDocumentationWV3.jsp ~Nicole On Mar 19, 2015, at 4:59 PM, Ista Zahn istaz...@gmail.com mailto: istaz...@gmail.com wrote: Is the file publicly available? What is the URL? Best, Ista On Thu, Mar 19, 2015 at 4:46 PM, Nicole Ford nicole.f...@me.com mailto:nicole.f...@me.com wrote: Hello, Ista. Honestly, I am uncertain. I don't have STATA -- I downloaded this from the data source website. I can't imagine it is 13 because the data are old (2006). I tried package
Re: [R] not a Stata version 5-12 .dta file
hi nicole, i have published easy to reproduce, well-documented code to download and then analyze every file from every wave of the world values survey here. the download automation script should solve your problem, or at least work around it :) http://www.asdfree.com/search/label/world%20values%20survey%20%28wvs%29 On Thu, Mar 19, 2015 at 6:09 PM, Nicole Ford nicole.f...@me.com wrote: the text didn’t send for the R data file erros. sorry about that. 2015-03-19 17:41:38.544 R[398:5728] Unable to simultaneously satisfy constraints: ( NSAutoresizingMaskLayoutConstraint:0x618966c0 h=-- v=-- H:|-(0)-[NSView:0x6032da20] (Names: '|':FIFinderView:0x6080003612c0 ), NSAutoresizingMaskLayoutConstraint:0x612881b0 h=-- v=-- H:[NSView:0x6032da20]-(0)-| (Names: '|':FIFinderView:0x6080003612c0 ), NSAutoresizingMaskLayoutConstraint:0x60a8c710 h=-- v=-- H:|-(0)-[FIFinderView:0x6080003612c0] (Names: '|':NSNavFinderViewFileBrowser:0x608000375fc0 ), NSAutoresizingMaskLayoutConstraint:0x6128eb50 h=-- v=-- H:[FIFinderView:0x6080003612c0]-(0)-| (Names: '|':NSNavFinderViewFileBrowser:0x608000375fc0 ), NSAutoresizingMaskLayoutConstraint:0x60c93fb0 h=-- v=-- H:[NSNavFinderViewFileBrowser:0x608000375fc0(585)], NSLayoutConstraint:0x6149d740 H:|-(0)-[NSView:0x60133ec0] (Names: '|':NSView:0x6032da20 ), NSLayoutConstraint:0x61489880 H:[NSView:0x60133ec0]-(0)-| (Names: '|':NSView:0x6032da20 ), NSLayoutConstraint:0x6109e280 H:[FILocationPopUp:0x603fda00(207)], NSLayoutConstraint:0x60a82760 NSView:0x60133ec0.centerX == FILocationPopUp:0x603fda00.centerX, NSLayoutConstraint:0x60e835c0 H:[FILocationPopUp:0x603fda00]-(=10)-[SGTSearchField:0x603bf800], NSLayoutConstraint:0x6069f2c0 H:[SGTSearchField:0x603bf800]-(11)-| (Names: '|':NSView:0x60133ec0 ), NSLayoutConstraint:0x606801e0 H:[SGTSearchField:0x603bf800(=218)] ) Will attempt to recover by breaking constraint NSLayoutConstraint:0x606801e0 H:[SGTSearchField:0x603bf800(=218)] Set the NSUserDefault NSConstraintBasedLayoutVisualizeMutuallyExclusiveConstraints to YES to have -[NSWindow visualizeConstraints:] automatically called when this happens. And/or, break on objc_exception_throw to catch this in the debugger. str(dat) chr [1:2] .Traceback WV3_Data_rdata_v_2014_09_21 ls(dat) Error in as.environment(pos) : no item called .Traceback on the search list dat [1] .Traceback WV3_Data_rdata_v_2014_09_21 sessionInfo() R version 3.1.3 (2015-03-09) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X 10.10.1 (Yosemite) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] readstata13_0.5-3 effects_3.0-3 lattice_0.20-30 lme4_1.1-7 Rcpp_0.11.2 Matrix_1.1-5 runjags_1.2.1-0 sm_2.2-5.4 [9] foreign_0.8-63car_2.0-25 loaded via a namespace (and not attached): [1] coda_0.16-1 colorspace_1.2-4 grid_3.1.3 MASS_7.3-39 mgcv_1.8-4 minqa_1.2.3 nlme_3.1-120 nloptr_1.0.0 nnet_7.3-9 [10] parallel_3.1.3 pbkrtest_0.4-2 quantreg_5.11SparseM_1.6 splines_3.1.3tools_3.1.3 On Mar 19, 2015, at 5:08 PM, Nicole Ford nicole.f...@me.com wrote: Ista, I am pulling multiple countries and multiple waves, but here is one country in one wave. I know if I can get one to work, I can get them all to work. I have used WVS data in the past and never encountered any issues, so I am at a loss here. Thanks again! http://www.worldvaluessurvey.org/WVSDocumentationWV3.jsp http://www.worldvaluessurvey.org/WVSDocumentationWV3.jsp ~Nicole On Mar 19, 2015, at 4:59 PM, Ista Zahn istaz...@gmail.com mailto: istaz...@gmail.com wrote: Is the file publicly available? What is the URL? Best, Ista On Thu, Mar 19, 2015 at 4:46 PM, Nicole Ford nicole.f...@me.com mailto:nicole.f...@me.com wrote: Hello, Ista. Honestly, I am uncertain. I don't have STATA -- I downloaded this from the data source website. I can't imagine it is 13 because the data are old (2006). I tried package readstata13 out of desperation, but didn't think it would resolve. Thanks for the suggestion! Sent from my iPhone On Mar 19, 2015, at 4:41 PM, Ista Zahn istaz...@gmail.com mailto: istaz...@gmail.com wrote: Hi Nicole, Is it a stata 13 data file? If so your best bet is to open it in Stata and use the saveold command to save it as a stata 12 file. Best, Ista On Thu, Mar 19, 2015 at 3:00 PM, Nicole Ford nicole.f...@me.com mailto:nicole.f...@me.com wrote: Hello, I recently updated to the newest version of R and I am encountering issues. Please find my error and session info below.
Re: [R] not a Stata version 5-12 .dta file
Anthony, Thanks for this. The issue I am having is WVS didn’t save all of their stata files, it seems, as .dta. Further, the .rdata files are not loading correctly, either, giving me .Traceback or crashes R when I try to source it. I will poke around your link to see if it can provide any insight. ~n On Mar 19, 2015, at 9:09 PM, Anthony Damico ajdam...@gmail.com wrote: hi nicole, i have published easy to reproduce, well-documented code to download and then analyze every file from every wave of the world values survey here. the download automation script should solve your problem, or at least work around it :) http://www.asdfree.com/search/label/world%20values%20survey%20%28wvs%29 http://www.asdfree.com/search/label/world%20values%20survey%20%28wvs%29 On Thu, Mar 19, 2015 at 6:09 PM, Nicole Ford nicole.f...@me.com mailto:nicole.f...@me.com wrote: the text didn’t send for the R data file erros. sorry about that. 2015-03-19 17:41:38.544 R[398:5728] Unable to simultaneously satisfy constraints: ( NSAutoresizingMaskLayoutConstraint:0x618966c0 h=-- v=-- H:|-(0)-[NSView:0x6032da20] (Names: '|':FIFinderView:0x6080003612c0 ), NSAutoresizingMaskLayoutConstraint:0x612881b0 h=-- v=-- H:[NSView:0x6032da20]-(0)-| (Names: '|':FIFinderView:0x6080003612c0 ), NSAutoresizingMaskLayoutConstraint:0x60a8c710 h=-- v=-- H:|-(0)-[FIFinderView:0x6080003612c0] (Names: '|':NSNavFinderViewFileBrowser:0x608000375fc0 ), NSAutoresizingMaskLayoutConstraint:0x6128eb50 h=-- v=-- H:[FIFinderView:0x6080003612c0]-(0)-| (Names: '|':NSNavFinderViewFileBrowser:0x608000375fc0 ), NSAutoresizingMaskLayoutConstraint:0x60c93fb0 h=-- v=-- H:[NSNavFinderViewFileBrowser:0x608000375fc0(585)], NSLayoutConstraint:0x6149d740 H:|-(0)-[NSView:0x60133ec0] (Names: '|':NSView:0x6032da20 ), NSLayoutConstraint:0x61489880 H:[NSView:0x60133ec0]-(0)-| (Names: '|':NSView:0x6032da20 ), NSLayoutConstraint:0x6109e280 H:[FILocationPopUp:0x603fda00(207)], NSLayoutConstraint:0x60a82760 NSView:0x60133ec0.centerX == FILocationPopUp:0x603fda00.centerX, NSLayoutConstraint:0x60e835c0 H:[FILocationPopUp:0x603fda00]-(=10)-[SGTSearchField:0x603bf800], NSLayoutConstraint:0x6069f2c0 H:[SGTSearchField:0x603bf800]-(11)-| (Names: '|':NSView:0x60133ec0 ), NSLayoutConstraint:0x606801e0 H:[SGTSearchField:0x603bf800(=218)] ) Will attempt to recover by breaking constraint NSLayoutConstraint:0x606801e0 H:[SGTSearchField:0x603bf800(=218)] Set the NSUserDefault NSConstraintBasedLayoutVisualizeMutuallyExclusiveConstraints to YES to have -[NSWindow visualizeConstraints:] automatically called when this happens. And/or, break on objc_exception_throw to catch this in the debugger. str(dat) chr [1:2] .Traceback WV3_Data_rdata_v_2014_09_21 ls(dat) Error in as.environment(pos) : no item called .Traceback on the search list dat [1] .Traceback WV3_Data_rdata_v_2014_09_21 sessionInfo() R version 3.1.3 (2015-03-09) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X 10.10.1 (Yosemite) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] readstata13_0.5-3 effects_3.0-3 lattice_0.20-30 lme4_1.1-7 Rcpp_0.11.2 Matrix_1.1-5 runjags_1.2.1-0 sm_2.2-5.4 [9] foreign_0.8-63car_2.0-25 loaded via a namespace (and not attached): [1] coda_0.16-1 colorspace_1.2-4 grid_3.1.3 MASS_7.3-39 mgcv_1.8-4 minqa_1.2.3 nlme_3.1-120 nloptr_1.0.0 nnet_7.3-9 [10] parallel_3.1.3 pbkrtest_0.4-2 quantreg_5.11SparseM_1.6 splines_3.1.3tools_3.1.3 On Mar 19, 2015, at 5:08 PM, Nicole Ford nicole.f...@me.com mailto:nicole.f...@me.com wrote: Ista, I am pulling multiple countries and multiple waves, but here is one country in one wave. I know if I can get one to work, I can get them all to work. I have used WVS data in the past and never encountered any issues, so I am at a loss here. Thanks again! http://www.worldvaluessurvey.org/WVSDocumentationWV3.jsp http://www.worldvaluessurvey.org/WVSDocumentationWV3.jsphttp://www.worldvaluessurvey.org/WVSDocumentationWV3.jsp http://www.worldvaluessurvey.org/WVSDocumentationWV3.jsp ~Nicole On Mar 19, 2015, at 4:59 PM, Ista Zahn istaz...@gmail.com mailto:istaz...@gmail.com mailto:istaz...@gmail.com mailto:istaz...@gmail.com wrote: Is the file publicly available? What is the URL? Best, Ista On Thu, Mar 19, 2015 at 4:46 PM, Nicole Ford nicole.f...@me.com mailto:nicole.f...@me.com mailto:nicole.f...@me.com mailto:nicole.f...@me.com wrote:
[R] r2wd (Write R to Word) in Chinese
Hi, The package r2wd is good at writing MS Word document from R. Can Chinese be written into MS Word by this package or any other method from R? Are Chinese fonts (e.g., Kai 楷書) available in r2wd? Thanks! [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] not a Stata version 5-12 .dta file
That is not a Stata data file, but a plain text data file. You can try
reading it into R like
x - read.table(WV3_Data_Russia_1995_stata_v_2014_04_28.dat,
fill = TRUE)
but you won't know what anything is. The metadata is in the .dct file,
in a format only Stata can love...
Best,
Ista
On Thu, Mar 19, 2015 at 9:50 PM, Nicole Ford nicole.f...@me.com wrote:
It seems the problem I am having is actually on the WVS end. The files I am
downloading seem to have incorrect endings? for example:
WV3_Data_Russia_1995_stata_v_2014_04_28.dat
I have emailed them and let them know.
~Nicole Ford
Ph.D. Candidate/ Instructor
University of South Florida
Government and International Affairs
Visitor, University of Rochester
office: Gavett 303P
e: nicole.f...@me.com
http://usf.academia.edu/NicoleFord
On Mar 19, 2015, at 8:53 PM, Ista Zahn istaz...@gmail.com wrote:
Does
/Users/nicoleford/Desktop/Russia2006.dta
exist? What does
list.files(/Users/nicoleford/Desktop, pattern = \\.dta)
say?
On Thu, Mar 19, 2015 at 8:35 PM, Nicole Ford nicole.f...@me.com wrote:
ok so after another restart- I got rid of some of the errors. But I am
still unable to load and R is telling me it is not a stata13 file.
dat - read.dta13(file.choose())
Error: First byte: Not a version 13 dta-file.
options(useFancyQuotes=F)
dat - read.dta(file.choose())
Error in read.dta(file.choose()) : not a Stata version 5-12 .dta file
options(useFancyQuotes=F)
dat - read.dta('/Users/nicoleford/Desktop/Russia2006.dta')
Error in read.dta(/Users/nicoleford/Desktop/Russia2006.dta) :
unable to open file: 'No such file or directory'
dat - read.dta(file='/Users/nicoleford/Desktop/Russia2006.dta')
Error in read.dta(file = /Users/nicoleford/Desktop/Russia2006.dta) :
unable to open file: 'No such file or directory’
I’m really at a loss.
~Nicole Ford
Ph.D. Candidate/ Instructor
University of South Florida
Government and International Affairs
Visitor, University of Rochester
office: Gavett 303P
e: nfo...@ur.rochester.edu
http://usf.academia.edu/NicoleFord
On Mar 19, 2015, at 6:09 PM, Nicole Ford nicole.f...@me.com wrote:
the text didn’t send for the R data file erros. sorry about that.
2015-03-19 17:41:38.544 R[398:5728] Unable to simultaneously satisfy
constraints:
(
NSAutoresizingMaskLayoutConstraint:0x618966c0 h=-- v=--
H:|-(0)-[NSView:0x6032da20] (Names: '|':FIFinderView:0x6080003612c0
),
NSAutoresizingMaskLayoutConstraint:0x612881b0 h=-- v=--
H:[NSView:0x6032da20]-(0)-| (Names: '|':FIFinderView:0x6080003612c0
),
NSAutoresizingMaskLayoutConstraint:0x60a8c710 h=-- v=--
H:|-(0)-[FIFinderView:0x6080003612c0] (Names:
'|':NSNavFinderViewFileBrowser:0x608000375fc0 ),
NSAutoresizingMaskLayoutConstraint:0x6128eb50 h=-- v=--
H:[FIFinderView:0x6080003612c0]-(0)-| (Names:
'|':NSNavFinderViewFileBrowser:0x608000375fc0 ),
NSAutoresizingMaskLayoutConstraint:0x60c93fb0 h=-- v=--
H:[NSNavFinderViewFileBrowser:0x608000375fc0(585)],
NSLayoutConstraint:0x6149d740 H:|-(0)-[NSView:0x60133ec0]
(Names: '|':NSView:0x6032da20 ),
NSLayoutConstraint:0x61489880 H:[NSView:0x60133ec0]-(0)-|
(Names: '|':NSView:0x6032da20 ),
NSLayoutConstraint:0x6109e280
H:[FILocationPopUp:0x603fda00(207)],
NSLayoutConstraint:0x60a82760 NSView:0x60133ec0.centerX ==
FILocationPopUp:0x603fda00.centerX,
NSLayoutConstraint:0x60e835c0
H:[FILocationPopUp:0x603fda00]-(=10)-[SGTSearchField:0x603bf800],
NSLayoutConstraint:0x6069f2c0
H:[SGTSearchField:0x603bf800]-(11)-| (Names: '|':NSView:0x60133ec0
),
NSLayoutConstraint:0x606801e0
H:[SGTSearchField:0x603bf800(=218)]
)
Will attempt to recover by breaking constraint
NSLayoutConstraint:0x606801e0 H:[SGTSearchField:0x603bf800(=218)]
Set the NSUserDefault
NSConstraintBasedLayoutVisualizeMutuallyExclusiveConstraints to YES to have
-[NSWindow visualizeConstraints:] automatically called when this happens.
And/or, break on objc_exception_throw to catch this in the debugger.
str(dat)
chr [1:2] .Traceback WV3_Data_rdata_v_2014_09_21
ls(dat)
Error in as.environment(pos) :
no item called .Traceback on the search list
dat
[1] .Traceback WV3_Data_rdata_v_2014_09_21
sessionInfo()
R version 3.1.3 (2015-03-09)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.10.1 (Yosemite)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] readstata13_0.5-3 effects_3.0-3 lattice_0.20-30 lme4_1.1-7
Rcpp_0.11.2 Matrix_1.1-5 runjags_1.2.1-0 sm_2.2-5.4
[9] foreign_0.8-63car_2.0-25
loaded via a namespace (and not attached):
[1] coda_0.16-1 colorspace_1.2-4 grid_3.1.3 MASS_7.3-39
mgcv_1.8-4
Re: [R] not a Stata version 5-12 .dta file
I am trying it now— it is downloading currently. I will let you know of any success in the morning.Thanks! On Mar 20, 2015, at 12:09 AM, Anthony Damico ajdam...@gmail.com wrote: doesn't just running this solve your problem? https://github.com/ajdamico/usgsd/blob/master/World%20Values%20Survey/download%20all%20microdata.R https://github.com/ajdamico/usgsd/blob/master/World%20Values%20Survey/download%20all%20microdata.R On Fri, Mar 20, 2015 at 12:04 AM, Nicole Ford nicole.f...@me.com mailto:nicole.f...@me.com wrote: Anthony, Thanks for this. The issue I am having is WVS didn’t save all of their stata files, it seems, as .dta. Further, the .rdata files are not loading correctly, either, giving me .Traceback or crashes R when I try to source it. I will poke around your link to see if it can provide any insight. ~n On Mar 19, 2015, at 9:09 PM, Anthony Damico ajdam...@gmail.com mailto:ajdam...@gmail.com wrote: hi nicole, i have published easy to reproduce, well-documented code to download and then analyze every file from every wave of the world values survey here. the download automation script should solve your problem, or at least work around it :) http://www.asdfree.com/search/label/world%20values%20survey%20%28wvs%29 http://www.asdfree.com/search/label/world%20values%20survey%20%28wvs%29 On Thu, Mar 19, 2015 at 6:09 PM, Nicole Ford nicole.f...@me.com mailto:nicole.f...@me.com wrote: the text didn’t send for the R data file erros. sorry about that. 2015-03-19 17:41:38.544 R[398:5728] Unable to simultaneously satisfy constraints: ( NSAutoresizingMaskLayoutConstraint:0x618966c0 h=-- v=-- H:|-(0)-[NSView:0x6032da20] (Names: '|':FIFinderView:0x6080003612c0 ), NSAutoresizingMaskLayoutConstraint:0x612881b0 h=-- v=-- H:[NSView:0x6032da20]-(0)-| (Names: '|':FIFinderView:0x6080003612c0 ), NSAutoresizingMaskLayoutConstraint:0x60a8c710 h=-- v=-- H:|-(0)-[FIFinderView:0x6080003612c0] (Names: '|':NSNavFinderViewFileBrowser:0x608000375fc0 ), NSAutoresizingMaskLayoutConstraint:0x6128eb50 h=-- v=-- H:[FIFinderView:0x6080003612c0]-(0)-| (Names: '|':NSNavFinderViewFileBrowser:0x608000375fc0 ), NSAutoresizingMaskLayoutConstraint:0x60c93fb0 h=-- v=-- H:[NSNavFinderViewFileBrowser:0x608000375fc0(585)], NSLayoutConstraint:0x6149d740 H:|-(0)-[NSView:0x60133ec0] (Names: '|':NSView:0x6032da20 ), NSLayoutConstraint:0x61489880 H:[NSView:0x60133ec0]-(0)-| (Names: '|':NSView:0x6032da20 ), NSLayoutConstraint:0x6109e280 H:[FILocationPopUp:0x603fda00(207)], NSLayoutConstraint:0x60a82760 NSView:0x60133ec0.centerX == FILocationPopUp:0x603fda00.centerX, NSLayoutConstraint:0x60e835c0 H:[FILocationPopUp:0x603fda00]-(=10)-[SGTSearchField:0x603bf800], NSLayoutConstraint:0x6069f2c0 H:[SGTSearchField:0x603bf800]-(11)-| (Names: '|':NSView:0x60133ec0 ), NSLayoutConstraint:0x606801e0 H:[SGTSearchField:0x603bf800(=218)] ) Will attempt to recover by breaking constraint NSLayoutConstraint:0x606801e0 H:[SGTSearchField:0x603bf800(=218)] Set the NSUserDefault NSConstraintBasedLayoutVisualizeMutuallyExclusiveConstraints to YES to have -[NSWindow visualizeConstraints:] automatically called when this happens. And/or, break on objc_exception_throw to catch this in the debugger. str(dat) chr [1:2] .Traceback WV3_Data_rdata_v_2014_09_21 ls(dat) Error in as.environment(pos) : no item called .Traceback on the search list dat [1] .Traceback WV3_Data_rdata_v_2014_09_21 sessionInfo() R version 3.1.3 (2015-03-09) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X 10.10.1 (Yosemite) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] readstata13_0.5-3 effects_3.0-3 lattice_0.20-30 lme4_1.1-7 Rcpp_0.11.2 Matrix_1.1-5 runjags_1.2.1-0 sm_2.2-5.4 [9] foreign_0.8-63car_2.0-25 loaded via a namespace (and not attached): [1] coda_0.16-1 colorspace_1.2-4 grid_3.1.3 MASS_7.3-39 mgcv_1.8-4 minqa_1.2.3 nlme_3.1-120 nloptr_1.0.0 nnet_7.3-9 [10] parallel_3.1.3 pbkrtest_0.4-2 quantreg_5.11SparseM_1.6 splines_3.1.3tools_3.1.3 On Mar 19, 2015, at 5:08 PM, Nicole Ford nicole.f...@me.com mailto:nicole.f...@me.com wrote: Ista, I am pulling multiple countries and multiple waves, but here is one country in one wave. I know if I can get one to work, I can get them all to work. I have used WVS data in the past and never encountered any issues, so I am at a loss here. Thanks again!
[R] Problem with different proj4string that are actually identical
Dear everybody I am trying to run an Ecological Niche Factor Analysis (enfa) with the package adehabitatHS but before I do so, I want to test the significance of its parameters marginality and tolerance, by using the function niche.test() that runs a Monte Carlo test. I used to do that with the old package adehabitat that is now deprecated so I updated all my codes. Everything I want to do seems to work fine except the niche.test() function and I get the error message here below. testCro-niche.test(paramdf, spCro, nrep = 999, o.include = TRUE) Error in join(pts, ta) : different proj4string in x and xy I checked the proj4string for x (paramdf) and xy (spCro) and there are exactly identical (see below). summary(spCro) Object of class SpatialPoints Coordinates: min max longitude -124.91 -124.13 latitude39.86 46.95 Is projected: FALSE proj4string : [+proj=longlat +datum=WGS84 +ellps=WGS84 +towgs84=0,0,0] Number of points: 84 summary(paramdf) Object of class SpatialPixelsDataFrame Coordinates: min max x -125.5 -123.7998 y 39.50384 47. Is projected: FALSE proj4string : [+proj=longlat +datum=WGS84 +ellps=WGS84 +towgs84=0,0,0] Number of points: 108237 Grid attributes: cellcentre.offset cellsize cells.dim x-125.49517 0.00966 176 y 39.50867 0.00966 776 Data attributes: bath slope rugo sumT Min. :-3611.83 Min. : 0. Min. :0.00 Min. : 1.184 1st Qu.:-1885.11 1st Qu.: 0.5271 1st Qu.:0.008044 1st Qu.: 2.150 Median : -894.61 Median : 1.4974 Median :0.036921 Median : 3.978 Mean :-1157.85 Mean : 3.4237 Mean :0.147369 Mean : 4.794 3rd Qu.: -150.85 3rd Qu.: 4.1152 3rd Qu.:0.197974 3rd Qu.: 7.388 Max. : -0.05 Max. :61.3592 Max. :0.992856 Max. :14.436 [...] I think I looked for all the help I could find on the internet and didn't find any solution so here is my last chance. Does anybody have an idea on how to solve this problem? By the way, I use the R version 3.1.3 and up-to-date adehabitatHS, ade4, sp and other packages. Thanks a lot, Lenaig )))° °((( Lenaïg Hemery, Ph. D. Research Associate - post-doc Hatfield Marine Science Center Oregon State University 2030 S.E. Marine Science Drive, Newport, OR 97365, USA Cell:+1-541-272-7196 __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] no variable removal when running glmnet on diabetes dataset with alpha=1, lambda=.1
New ZixCorp secure email message from ValueOptions Secure Email To view the secure message, click on the link below or copy and paste the link into your Internet browser address bar. https://securemail-valueoptions.com/s/e?m=ABC5UVsyBkxRSfS2UXb8k64pc=ABDfgFbxA3h2RUXHIPdWEiCwem=R%2dhelp%40r%2dproject%2eorg You are reading the plaintext version of this message. For a better user experience, change your email settings to enable the viewing of HTML. Do not reply to this notification message; this message was auto-generated by the sender's security system. To reply to the sender, click on the link above. The secure message expires on Sep 15, 2015 @ 08:04 PM (GMT). Want to send and receive secure email messages transparently? http://www.zixcorp.com/info/zixmail_ZMC [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] not a Stata version 5-12 .dta file
the text didn’t send for the R data file erros. sorry about that. 2015-03-19 17:41:38.544 R[398:5728] Unable to simultaneously satisfy constraints: ( NSAutoresizingMaskLayoutConstraint:0x618966c0 h=-- v=-- H:|-(0)-[NSView:0x6032da20] (Names: '|':FIFinderView:0x6080003612c0 ), NSAutoresizingMaskLayoutConstraint:0x612881b0 h=-- v=-- H:[NSView:0x6032da20]-(0)-| (Names: '|':FIFinderView:0x6080003612c0 ), NSAutoresizingMaskLayoutConstraint:0x60a8c710 h=-- v=-- H:|-(0)-[FIFinderView:0x6080003612c0] (Names: '|':NSNavFinderViewFileBrowser:0x608000375fc0 ), NSAutoresizingMaskLayoutConstraint:0x6128eb50 h=-- v=-- H:[FIFinderView:0x6080003612c0]-(0)-| (Names: '|':NSNavFinderViewFileBrowser:0x608000375fc0 ), NSAutoresizingMaskLayoutConstraint:0x60c93fb0 h=-- v=-- H:[NSNavFinderViewFileBrowser:0x608000375fc0(585)], NSLayoutConstraint:0x6149d740 H:|-(0)-[NSView:0x60133ec0] (Names: '|':NSView:0x6032da20 ), NSLayoutConstraint:0x61489880 H:[NSView:0x60133ec0]-(0)-| (Names: '|':NSView:0x6032da20 ), NSLayoutConstraint:0x6109e280 H:[FILocationPopUp:0x603fda00(207)], NSLayoutConstraint:0x60a82760 NSView:0x60133ec0.centerX == FILocationPopUp:0x603fda00.centerX, NSLayoutConstraint:0x60e835c0 H:[FILocationPopUp:0x603fda00]-(=10)-[SGTSearchField:0x603bf800], NSLayoutConstraint:0x6069f2c0 H:[SGTSearchField:0x603bf800]-(11)-| (Names: '|':NSView:0x60133ec0 ), NSLayoutConstraint:0x606801e0 H:[SGTSearchField:0x603bf800(=218)] ) Will attempt to recover by breaking constraint NSLayoutConstraint:0x606801e0 H:[SGTSearchField:0x603bf800(=218)] Set the NSUserDefault NSConstraintBasedLayoutVisualizeMutuallyExclusiveConstraints to YES to have -[NSWindow visualizeConstraints:] automatically called when this happens. And/or, break on objc_exception_throw to catch this in the debugger. str(dat) chr [1:2] .Traceback WV3_Data_rdata_v_2014_09_21 ls(dat) Error in as.environment(pos) : no item called .Traceback on the search list dat [1] .Traceback WV3_Data_rdata_v_2014_09_21 sessionInfo() R version 3.1.3 (2015-03-09) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X 10.10.1 (Yosemite) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] readstata13_0.5-3 effects_3.0-3 lattice_0.20-30 lme4_1.1-7 Rcpp_0.11.2 Matrix_1.1-5 runjags_1.2.1-0 sm_2.2-5.4 [9] foreign_0.8-63car_2.0-25 loaded via a namespace (and not attached): [1] coda_0.16-1 colorspace_1.2-4 grid_3.1.3 MASS_7.3-39 mgcv_1.8-4 minqa_1.2.3 nlme_3.1-120 nloptr_1.0.0 nnet_7.3-9 [10] parallel_3.1.3 pbkrtest_0.4-2 quantreg_5.11SparseM_1.6 splines_3.1.3tools_3.1.3 On Mar 19, 2015, at 5:08 PM, Nicole Ford nicole.f...@me.com wrote: Ista, I am pulling multiple countries and multiple waves, but here is one country in one wave. I know if I can get one to work, I can get them all to work. I have used WVS data in the past and never encountered any issues, so I am at a loss here. Thanks again! http://www.worldvaluessurvey.org/WVSDocumentationWV3.jsp http://www.worldvaluessurvey.org/WVSDocumentationWV3.jsp ~Nicole On Mar 19, 2015, at 4:59 PM, Ista Zahn istaz...@gmail.com mailto:istaz...@gmail.com wrote: Is the file publicly available? What is the URL? Best, Ista On Thu, Mar 19, 2015 at 4:46 PM, Nicole Ford nicole.f...@me.com mailto:nicole.f...@me.com wrote: Hello, Ista. Honestly, I am uncertain. I don't have STATA -- I downloaded this from the data source website. I can't imagine it is 13 because the data are old (2006). I tried package readstata13 out of desperation, but didn't think it would resolve. Thanks for the suggestion! Sent from my iPhone On Mar 19, 2015, at 4:41 PM, Ista Zahn istaz...@gmail.com mailto:istaz...@gmail.com wrote: Hi Nicole, Is it a stata 13 data file? If so your best bet is to open it in Stata and use the saveold command to save it as a stata 12 file. Best, Ista On Thu, Mar 19, 2015 at 3:00 PM, Nicole Ford nicole.f...@me.com mailto:nicole.f...@me.com wrote: Hello, I recently updated to the newest version of R and I am encountering issues. Please find my error and session info below. My data are attached. I have tried the readstata13 package just in case to no avail. Unless I am missing something, google isn’t helping. Thank you in advance. error: dat - read.dta(file.choose()) Error in read.dta(file.choose()) : not a Stata version 5-12 .dta file 2015-03-19 14:14:21.445 R[398:5728] Unable to simultaneously satisfy constraints: (
[R] remove outliers with scatterplotMatrix
outliers may sometimes make a scatter plot less understandable. when using scatterplotMatrix, is it possible to automatically remove them? [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Multicollinearity, plm, and omitting variables
I'm fitting a fixed effect model with plm and know that I'm dealing with multi-collinearity between two of the independent variables. I working on identifying multicolliearity in models as a practice and have identified the variable with alias(), then verified with vif(). I was also able to use kappa() to show a very large conditional number verifying the multicollinearity. My question is why does plm() omit this multicolliearity variable from the coefficients? There is no output clarifying why and I couldn't find anything in the documentation. Stata automatically omits this variable and I'm curious if plm() does a check and then omits. Does plm() run through checks when fitting a fixed effect model that checks for collinearity or any other problems before running the model? Why is dfmfd98 variable being omitted in the example below? Stack Exchange Post : http://stats.stackexchange.com/questions/141684/multicollinearity-plm-and-omitting-variables Multicollinearity variable dfmfd98 Reproducible example : dput : data - structure(list(lexptot = c(8.28377505197124, 9.1595012302023, 8.14707583238833, 9.86330744180814, 8.21391453619232, 8.92372556833205, 7.77219149815994, 8.58202430280175, 8.34096828565733, 10.1133857229336, 8.56482997492403, 8.09468633074053, 8.27040804817704, 8.69834992618814, 8.03086333985764, 8.89644392254136, 8.20990433577082, 8.82621293136669, 7.79379981225575, 8.16139809188569, 8.25549748271241, 8.57464947213076, 8.2714431846277, 8.72374048671495, 7.98522888221012, 8.56460042433047, 8.22778847721461, 9.15431416391622, 8.25261818916933, 8.88033778695326), year = c(0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L), dfmfdyr = c(0, 1, 0, 1, 0, 1, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 0, 1, 0, 1, 0, 1, 0, 0, 0, 0), dfmfd98 = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0), nh = c(11054L, 11054L, 11061L, 11061L, 11081L, 11081L, 11101L, 11101L, 12021L, 12021L, 12035L, 12035L, 12051L, 12051L, 12054L, 12054L, 12081L, 12081L, 12121L, 12121L, 13014L, 13014L, 13015L, 13015L, 13021L, 13021L, 13025L, 13025L, 13035L, 13035L)), .Names = c(lexptot, year, dfmfdyr, dfmfd98, nh), class = c(tbl_df, data.frame), row.names = c(NA, -30L)) Regression Code : library(plm) lm - plm(lexptot ~ year + dfmfdyr + dfmfd98 + nh, data = data, model = within, index = nh) summary(lm) Output : Oneway (individual) effect Within Model Call: plm(formula = lexptot ~ year + dfmfdyr + dfmfd98 + nh, data = data, model = within, index = nh) Balanced Panel: n=15, T=2, N=30 Residuals : Min. 1st Qu.Median 3rd Qu. Max. -4.75e-01 -1.69e-01 4.44e-16 1.69e-01 4.75e-01 Coefficients : Estimate Std. Error t-value Pr(|t|) year 0.475520.23830 1.9955 0.06738 . dfmfdyr 0.346350.29185 1.1867 0.25657 --- Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 Total Sum of Squares:5.7882 Residual Sum of Squares: 1.8455 R-Squared : 0.68116 Adj. R-Squared : 0.29517 F-statistic: 13.8864 on 2 and 13 DF, p-value: 0.00059322 [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Use BatchJobs package to submit Rmpi job
Hi,
BatchJobs package is popular to submit R batch jobs on various job scheduler.
Now we are facing the question is to submit a Rmpi jobs. So we want to know how
we can leverage BatchJobs to do so. After a bit investigation/enhancement, we
tested below approach on OpenLava job scheduler. we want to get some inputs
from the group to see how this makes sense to you. thanks,
1. R script that submit a Rmpi job using BatchJobs:
library(BatchJobs)
conf = BatchJobs:::getBatchJobsConf()
conf$cluster.functions =
makeClusterFunctionsOpenLava(/home/clusteradmin/rmpi.tmpl) -- specify
job template file that includes mpirun to start R job.
reg = makeRegistry(id = RMPIJobsExample)
f = function(x) {-- RMPI
algorithm function. This is the normal Rmpi R script.
library(Rmpi)
...
mpi.spawn.Rslaves(nslaves=slaveno)
...
mpi.remote.exec(paste(I
am,mpi.comm.rank(),of,mpi.comm.size()))
...
}
batchMap(reg, f, 1) -- specify 1 Rmpi job
submitJobs(reg, np=2) -- specify number of
processors to use
showStatus(reg)
waitForJobs(reg)
showStatus(reg)
2. the job template: rmpi.tmpl
#BSUB -q mpi_job_queue
/opt/openlava/bin/openmpi-mpirun
-np 1 R CMD BATCH %= rscript %
Please let us know your comments,
Thanks,
Feng Li
Teraproc Inc.
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https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] remove outliers with scatterplotMatrix
Dear Roberto, This is, I assume, the scatterplotMatrix() function in the car package. There is no option for automatically removing outliers, although the various options for labeling points should help you identify them. If you want to remove outliers once identified, you could use the subset argument to scatterplotMatrix(), much as you would for a statistical modeling function, as long as the variables in the scatterplot matrix are specified in a formula. For example, scatterplotMatrix(~ income + education + prestige, data=Duncan, id.n=2) identifies the two most noteworthy points in each panel (as explained in ?scatterplotMatrix), while scatterplotMatrix(~ income + education + prestige, data=Duncan, subset= -c(6, 16)) removes cases 6 and 16. I hope this helps, John --- John Fox, Professor McMaster University Hamilton, Ontario, Canada http://socserv.mcmaster.ca/jfox/ -Original Message- From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of Pagliari, Roberto Sent: March-19-15 11:07 AM To: r-help@r-project.org Subject: [R] remove outliers with scatterplotMatrix outliers may sometimes make a scatter plot less understandable. when using scatterplotMatrix, is it possible to automatically remove them? [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting- guide.html and provide commented, minimal, self-contained, reproducible code. --- This email has been checked for viruses by Avast antivirus software. http://www.avast.com __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Which is better: Modifying an existing package or creating a new one?
I would second that. -- | http://billyam.com || http://use-r.com || http://shinyserver.com (BETA) SAS Certified Base Programmer for SAS 9 Oracle SQL Expert(11g) On Thu, Mar 19, 2015 at 4:39 PM, Thierry Onkelinx thierry.onkel...@inbo.be wrote: I would consider a third option: suggest the changes to the package authors. The authors might include your modifications to the original package if they feel that it would improve their package. Otherwise go for option 2. Option 1 will be harder to maintain if you want benefit from the updates on the packages A, B, C, D, E. Best regards, ir. Thierry Onkelinx Instituut voor natuur- en bosonderzoek / Research Institute for Nature and Forest team Biometrie Kwaliteitszorg / team Biometrics Quality Assurance Kliniekstraat 25 1070 Anderlecht Belgium To call in the statistician after the experiment is done may be no more than asking him to perform a post-mortem examination: he may be able to say what the experiment died of. ~ Sir Ronald Aylmer Fisher The plural of anecdote is not data. ~ Roger Brinner The combination of some data and an aching desire for an answer does not ensure that a reasonable answer can be extracted from a given body of data. ~ John Tukey 2015-03-19 8:56 GMT+01:00 jpm miao miao...@gmail.com: Hi, Given that I frequently use A, B, C, D, E packages. In each of the 5 packages, I intend to modify one of the functions. Two ways: 1st: Modify A, B, C, D, E to A', B', C', D', E' Then I will use library(A') . library(E') instead of A, B, C, D, E. or Just keep the names A, B, C, D, E but modify the content 2nd: create a package F and add the five functions to the F package. For each of the 5 functions, a line library(A)... or library(E) is required. Then I will need library(F) when I create a new program. Which is a better way in terms of time consumption and code portability? If I move the codes to a new computer, which way will be easier? Any suggestion? Thanks, Miao [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Why do my posts not get accepted to the mailing list?
Greetings. I was told to email my question. Why do my posts not get accepted to the mailing list? Example: http://r.789695.n4.nabble.com/How-do-I-move-the-horizontal-axis-in-a-plot-so-that-it-starts-at-the-zero-of-the-vertical-axis-td4696935.html I don't understand why I always have this problem when I post and try to subscribe and I still haven't found a solution after three years. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] not a Stata version 5-12 .dta file
Hello, I recently updated to the newest version of R and I am encountering issues. Please find my error and session info below. My data are attached. I have tried the readstata13 package just in case to no avail. Unless I am missing something, google isn’t helping. Thank you in advance. error: dat - read.dta(file.choose()) Error in read.dta(file.choose()) : not a Stata version 5-12 .dta file 2015-03-19 14:14:21.445 R[398:5728] Unable to simultaneously satisfy constraints: ( NSAutoresizingMaskLayoutConstraint:0x608000490bd0 h=-- v=-- H:|-(0)-[NSView:0x6012eba0] (Names: '|':FIFinderView:0x60363a80 ), NSAutoresizingMaskLayoutConstraint:0x608000490e50 h=-- v=-- H:[NSView:0x6012eba0]-(0)-| (Names: '|':FIFinderView:0x60363a80 ), NSAutoresizingMaskLayoutConstraint:0x608000491120 h=-- v=-- H:|-(0)-[FIFinderView:0x60363a80] (Names: '|':NSNavFinderViewFileBrowser:0x608000377400 ), NSAutoresizingMaskLayoutConstraint:0x608000491170 h=-- v=-- H:[FIFinderView:0x60363a80]-(0)-| (Names: '|':NSNavFinderViewFileBrowser:0x608000377400 ), NSAutoresizingMaskLayoutConstraint:0x608000491350 h=-- v=-- H:[NSNavFinderViewFileBrowser:0x608000377400(585)], NSLayoutConstraint:0x60482d50 H:|-(0)-[NSView:0x6012e380] (Names: '|':NSView:0x6012eba0 ), NSLayoutConstraint:0x60482da0 H:[NSView:0x6012e380]-(0)-| (Names: '|':NSView:0x6012eba0 ), NSLayoutConstraint:0x604816d0 H:[FILocationPopUp:0x601f2800(207)], NSLayoutConstraint:0x60482a30 NSView:0x6012e380.centerX == FILocationPopUp:0x601f2800.centerX, NSLayoutConstraint:0x604825d0 H:[FILocationPopUp:0x601f2800]-(=10)-[SGTSearchField:0x603a5160], NSLayoutConstraint:0x60482b70 H:[SGTSearchField:0x603a5160]-(11)-| (Names: '|':NSView:0x6012e380 ), NSLayoutConstraint:0x604814f0 H:[SGTSearchField:0x603a5160(=218)] ) Will attempt to recover by breaking constraint NSLayoutConstraint:0x604814f0 H:[SGTSearchField:0x603a5160(=218)] Set the NSUserDefault NSConstraintBasedLayoutVisualizeMutuallyExclusiveConstraints to YES to have -[NSWindow visualizeConstraints:] automatically called when this happens. And/or, break on objc_exception_throw to catch this in the debugger. sessionInfo() Session Info: R version 3.1.3 (2015-03-09) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X 10.10.1 (Yosemite) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] effects_3.0-3 lattice_0.20-30 lme4_1.1-7 Rcpp_0.11.2 Matrix_1.1-5runjags_1.2.1-0 sm_2.2-5.4 foreign_0.8-63 car_2.0-25 loaded via a namespace (and not attached): [1] coda_0.16-1 colorspace_1.2-4 grid_3.1.3 MASS_7.3-39 mgcv_1.8-4 minqa_1.2.3 nlme_3.1-120 nloptr_1.0.0 nnet_7.3-9 [10] parallel_3.1.3 pbkrtest_0.4-2 quantreg_5.11SparseM_1.6 splines_3.1.3tools_3.1.3 ~n __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] not a Stata version 5-12 .dta file
Hello, I recently updated to the newest version of R and I am encountering issues. Please find my error and session info below. My data are attached. I have tried the readstata13 package just in case to no avail. Unless I am missing something, google isn’t helping. Thank you in advance. error: dat - read.dta(file.choose()) Error in read.dta(file.choose()) : not a Stata version 5-12 .dta file 2015-03-19 14:14:21.445 R[398:5728] Unable to simultaneously satisfy constraints: ( NSAutoresizingMaskLayoutConstraint:0x608000490bd0 h=-- v=-- H:|-(0)-[NSView:0x6012eba0] (Names: '|':FIFinderView:0x60363a80 ), NSAutoresizingMaskLayoutConstraint:0x608000490e50 h=-- v=-- H:[NSView:0x6012eba0]-(0)-| (Names: '|':FIFinderView:0x60363a80 ), NSAutoresizingMaskLayoutConstraint:0x608000491120 h=-- v=-- H:|-(0)-[FIFinderView:0x60363a80] (Names: '|':NSNavFinderViewFileBrowser:0x608000377400 ), NSAutoresizingMaskLayoutConstraint:0x608000491170 h=-- v=-- H:[FIFinderView:0x60363a80]-(0)-| (Names: '|':NSNavFinderViewFileBrowser:0x608000377400 ), NSAutoresizingMaskLayoutConstraint:0x608000491350 h=-- v=-- H:[NSNavFinderViewFileBrowser:0x608000377400(585)], NSLayoutConstraint:0x60482d50 H:|-(0)-[NSView:0x6012e380] (Names: '|':NSView:0x6012eba0 ), NSLayoutConstraint:0x60482da0 H:[NSView:0x6012e380]-(0)-| (Names: '|':NSView:0x6012eba0 ), NSLayoutConstraint:0x604816d0 H:[FILocationPopUp:0x601f2800(207)], NSLayoutConstraint:0x60482a30 NSView:0x6012e380.centerX == FILocationPopUp:0x601f2800.centerX, NSLayoutConstraint:0x604825d0 H:[FILocationPopUp:0x601f2800]-(=10)-[SGTSearchField:0x603a5160], NSLayoutConstraint:0x60482b70 H:[SGTSearchField:0x603a5160]-(11)-| (Names: '|':NSView:0x6012e380 ), NSLayoutConstraint:0x604814f0 H:[SGTSearchField:0x603a5160(=218)] ) Will attempt to recover by breaking constraint NSLayoutConstraint:0x604814f0 H:[SGTSearchField:0x603a5160(=218)] Set the NSUserDefault NSConstraintBasedLayoutVisualizeMutuallyExclusiveConstraints to YES to have -[NSWindow visualizeConstraints:] automatically called when this happens. And/or, break on objc_exception_throw to catch this in the debugger. sessionInfo() Session Info: R version 3.1.3 (2015-03-09) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X 10.10.1 (Yosemite) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] effects_3.0-3 lattice_0.20-30 lme4_1.1-7 Rcpp_0.11.2 Matrix_1.1-5runjags_1.2.1-0 sm_2.2-5.4 foreign_0.8-63 car_2.0-25 loaded via a namespace (and not attached): [1] coda_0.16-1 colorspace_1.2-4 grid_3.1.3 MASS_7.3-39 mgcv_1.8-4 minqa_1.2.3 nlme_3.1-120 nloptr_1.0.0 nnet_7.3-9 [10] parallel_3.1.3 pbkrtest_0.4-2 quantreg_5.11SparseM_1.6 splines_3.1.3tools_3.1.3 ~n __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] remove outliers with scatterplotMatrix
Thank you John, I will try that one. Bob, From: John Fox [j...@mcmaster.ca] Sent: Thursday, March 19, 2015 2:08 PM To: Pagliari, Roberto Cc: r-help@r-project.org Subject: RE: [R] remove outliers with scatterplotMatrix Dear Roberto, This is, I assume, the scatterplotMatrix() function in the car package. There is no option for automatically removing outliers, although the various options for labeling points should help you identify them. If you want to remove outliers once identified, you could use the subset argument to scatterplotMatrix(), much as you would for a statistical modeling function, as long as the variables in the scatterplot matrix are specified in a formula. For example, scatterplotMatrix(~ income + education + prestige, data=Duncan, id.n=2) identifies the two most noteworthy points in each panel (as explained in ?scatterplotMatrix), while scatterplotMatrix(~ income + education + prestige, data=Duncan, subset= -c(6, 16)) removes cases 6 and 16. I hope this helps, John --- John Fox, Professor McMaster University Hamilton, Ontario, Canada http://socserv.mcmaster.ca/jfox/ -Original Message- From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of Pagliari, Roberto Sent: March-19-15 11:07 AM To: r-help@r-project.org Subject: [R] remove outliers with scatterplotMatrix outliers may sometimes make a scatter plot less understandable. when using scatterplotMatrix, is it possible to automatically remove them? [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting- guide.html and provide commented, minimal, self-contained, reproducible code. --- This email has been checked for viruses by Avast antivirus software. http://www.avast.com __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Why do my posts not get accepted to the mailing list?
On 19/03/2015 2:26 PM, andrejfa...@ml1.net wrote: Greetings. I was told to email my question. Why do my posts not get accepted to the mailing list? Example: http://r.789695.n4.nabble.com/How-do-I-move-the-horizontal-axis-in-a-plot-so-that-it-starts-at-the-zero-of-the-vertical-axis-td4696935.html I don't understand why I always have this problem when I post and try to subscribe and I still haven't found a solution after three years. This post *did* appear on the mailing list. Do what you just did. I would not have seen your earlier posts, because I don't read posts from nabble; perhaps they are now banned completely. Duncan Murdoch __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] remove outliers with scatterplotMatrix
On Mar 19, 2015, at 8:06 AM, Pagliari, Roberto wrote: outliers may sometimes make a scatter plot less understandable. when using scatterplotMatrix, is it possible to automatically remove them? I've known people who set values to NA that are outside some predefined threshold such as less than the .05th percentile (the .0005th quantile) and the 99.95th percentile at the high end. I'm not so eager to erase values at either end, but there would be automated ways of doing that on a copy of the data. Post a better description of the data problem. [[alternative HTML version deleted]] And learn to configure your email client to post in plain text. and read the material mentioned below. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. David Winsemius Alameda, CA, USA __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] not a Stata version 5-12 .dta file
Hello, Ista. Honestly, I am uncertain. I don't have STATA -- I downloaded this from the data source website. I can't imagine it is 13 because the data are old (2006). I tried package readstata13 out of desperation, but didn't think it would resolve. Thanks for the suggestion! Sent from my iPhone On Mar 19, 2015, at 4:41 PM, Ista Zahn istaz...@gmail.com wrote: Hi Nicole, Is it a stata 13 data file? If so your best bet is to open it in Stata and use the saveold command to save it as a stata 12 file. Best, Ista On Thu, Mar 19, 2015 at 3:00 PM, Nicole Ford nicole.f...@me.com wrote: Hello, I recently updated to the newest version of R and I am encountering issues. Please find my error and session info below. My data are attached. I have tried the readstata13 package just in case to no avail. Unless I am missing something, google isn’t helping. Thank you in advance. error: dat - read.dta(file.choose()) Error in read.dta(file.choose()) : not a Stata version 5-12 .dta file 2015-03-19 14:14:21.445 R[398:5728] Unable to simultaneously satisfy constraints: ( NSAutoresizingMaskLayoutConstraint:0x608000490bd0 h=-- v=-- H:|-(0)-[NSView:0x6012eba0] (Names: '|':FIFinderView:0x60363a80 ), NSAutoresizingMaskLayoutConstraint:0x608000490e50 h=-- v=-- H:[NSView:0x6012eba0]-(0)-| (Names: '|':FIFinderView:0x60363a80 ), NSAutoresizingMaskLayoutConstraint:0x608000491120 h=-- v=-- H:|-(0)-[FIFinderView:0x60363a80] (Names: '|':NSNavFinderViewFileBrowser:0x608000377400 ), NSAutoresizingMaskLayoutConstraint:0x608000491170 h=-- v=-- H:[FIFinderView:0x60363a80]-(0)-| (Names: '|':NSNavFinderViewFileBrowser:0x608000377400 ), NSAutoresizingMaskLayoutConstraint:0x608000491350 h=-- v=-- H:[NSNavFinderViewFileBrowser:0x608000377400(585)], NSLayoutConstraint:0x60482d50 H:|-(0)-[NSView:0x6012e380] (Names: '|':NSView:0x6012eba0 ), NSLayoutConstraint:0x60482da0 H:[NSView:0x6012e380]-(0)-| (Names: '|':NSView:0x6012eba0 ), NSLayoutConstraint:0x604816d0 H:[FILocationPopUp:0x601f2800(207)], NSLayoutConstraint:0x60482a30 NSView:0x6012e380.centerX == FILocationPopUp:0x601f2800.centerX, NSLayoutConstraint:0x604825d0 H:[FILocationPopUp:0x601f2800]-(=10)-[SGTSearchField:0x603a5160], NSLayoutConstraint:0x60482b70 H:[SGTSearchField:0x603a5160]-(11)-| (Names: '|':NSView:0x6012e380 ), NSLayoutConstraint:0x604814f0 H:[SGTSearchField:0x603a5160(=218)] ) Will attempt to recover by breaking constraint NSLayoutConstraint:0x604814f0 H:[SGTSearchField:0x603a5160(=218)] Set the NSUserDefault NSConstraintBasedLayoutVisualizeMutuallyExclusiveConstraints to YES to have -[NSWindow visualizeConstraints:] automatically called when this happens. And/or, break on objc_exception_throw to catch this in the debugger. sessionInfo() Session Info: R version 3.1.3 (2015-03-09) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X 10.10.1 (Yosemite) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] effects_3.0-3 lattice_0.20-30 lme4_1.1-7 Rcpp_0.11.2 Matrix_1.1-5runjags_1.2.1-0 sm_2.2-5.4 foreign_0.8-63 car_2.0-25 loaded via a namespace (and not attached): [1] coda_0.16-1 colorspace_1.2-4 grid_3.1.3 MASS_7.3-39 mgcv_1.8-4 minqa_1.2.3 nlme_3.1-120 nloptr_1.0.0 nnet_7.3-9 [10] parallel_3.1.3 pbkrtest_0.4-2 quantreg_5.11SparseM_1.6 splines_3.1.3tools_3.1.3 ~n __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] not a Stata version 5-12 .dta file
Ista, I am pulling multiple countries and multiple waves, but here is one country in one wave. I know if I can get one to work, I can get them all to work. I have used WVS data in the past and never encountered any issues, so I am at a loss here. Thanks again! http://www.worldvaluessurvey.org/WVSDocumentationWV3.jsp http://www.worldvaluessurvey.org/WVSDocumentationWV3.jsp ~Nicole On Mar 19, 2015, at 4:59 PM, Ista Zahn istaz...@gmail.com wrote: Is the file publicly available? What is the URL? Best, Ista On Thu, Mar 19, 2015 at 4:46 PM, Nicole Ford nicole.f...@me.com wrote: Hello, Ista. Honestly, I am uncertain. I don't have STATA -- I downloaded this from the data source website. I can't imagine it is 13 because the data are old (2006). I tried package readstata13 out of desperation, but didn't think it would resolve. Thanks for the suggestion! Sent from my iPhone On Mar 19, 2015, at 4:41 PM, Ista Zahn istaz...@gmail.com wrote: Hi Nicole, Is it a stata 13 data file? If so your best bet is to open it in Stata and use the saveold command to save it as a stata 12 file. Best, Ista On Thu, Mar 19, 2015 at 3:00 PM, Nicole Ford nicole.f...@me.com wrote: Hello, I recently updated to the newest version of R and I am encountering issues. Please find my error and session info below. My data are attached. I have tried the readstata13 package just in case to no avail. Unless I am missing something, google isn’t helping. Thank you in advance. error: dat - read.dta(file.choose()) Error in read.dta(file.choose()) : not a Stata version 5-12 .dta file 2015-03-19 14:14:21.445 R[398:5728] Unable to simultaneously satisfy constraints: ( NSAutoresizingMaskLayoutConstraint:0x608000490bd0 h=-- v=-- H:|-(0)-[NSView:0x6012eba0] (Names: '|':FIFinderView:0x60363a80 ), NSAutoresizingMaskLayoutConstraint:0x608000490e50 h=-- v=-- H:[NSView:0x6012eba0]-(0)-| (Names: '|':FIFinderView:0x60363a80 ), NSAutoresizingMaskLayoutConstraint:0x608000491120 h=-- v=-- H:|-(0)-[FIFinderView:0x60363a80] (Names: '|':NSNavFinderViewFileBrowser:0x608000377400 ), NSAutoresizingMaskLayoutConstraint:0x608000491170 h=-- v=-- H:[FIFinderView:0x60363a80]-(0)-| (Names: '|':NSNavFinderViewFileBrowser:0x608000377400 ), NSAutoresizingMaskLayoutConstraint:0x608000491350 h=-- v=-- H:[NSNavFinderViewFileBrowser:0x608000377400(585)], NSLayoutConstraint:0x60482d50 H:|-(0)-[NSView:0x6012e380] (Names: '|':NSView:0x6012eba0 ), NSLayoutConstraint:0x60482da0 H:[NSView:0x6012e380]-(0)-| (Names: '|':NSView:0x6012eba0 ), NSLayoutConstraint:0x604816d0 H:[FILocationPopUp:0x601f2800(207)], NSLayoutConstraint:0x60482a30 NSView:0x6012e380.centerX == FILocationPopUp:0x601f2800.centerX, NSLayoutConstraint:0x604825d0 H:[FILocationPopUp:0x601f2800]-(=10)-[SGTSearchField:0x603a5160], NSLayoutConstraint:0x60482b70 H:[SGTSearchField:0x603a5160]-(11)-| (Names: '|':NSView:0x6012e380 ), NSLayoutConstraint:0x604814f0 H:[SGTSearchField:0x603a5160(=218)] ) Will attempt to recover by breaking constraint NSLayoutConstraint:0x604814f0 H:[SGTSearchField:0x603a5160(=218)] Set the NSUserDefault NSConstraintBasedLayoutVisualizeMutuallyExclusiveConstraints to YES to have -[NSWindow visualizeConstraints:] automatically called when this happens. And/or, break on objc_exception_throw to catch this in the debugger. sessionInfo() Session Info: R version 3.1.3 (2015-03-09) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X 10.10.1 (Yosemite) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] effects_3.0-3 lattice_0.20-30 lme4_1.1-7 Rcpp_0.11.2 Matrix_1.1-5runjags_1.2.1-0 sm_2.2-5.4 foreign_0.8-63 car_2.0-25 loaded via a namespace (and not attached): [1] coda_0.16-1 colorspace_1.2-4 grid_3.1.3 MASS_7.3-39 mgcv_1.8-4 minqa_1.2.3 nlme_3.1-120 nloptr_1.0.0 nnet_7.3-9 [10] parallel_3.1.3 pbkrtest_0.4-2 quantreg_5.11SparseM_1.6 splines_3.1.3tools_3.1.3 ~n __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
Re: [R] Tele_R - first experiences
Hey that's really nice. I'm not sure how practical it is, but it works surprisingly well. Best, Ista On Thu, Mar 19, 2015 at 8:21 AM, Dr. Wolfgang Lindner lindn...@t-online.de wrote: Dear R community, some days ago Enric Cervera Mateu has installed an R client with instant messaging, which is usable very simple via the public name @Tele_R in the messenger Telegram. I have tested Tele_R and e.g. tried most of the examples from [1] W.N. Venables, D.M. Smith, R Core Team. An Introduction to R. R Core Team. iBooks. and of §1 of [2] B. Everitt, T. Hothorn. An R and S-plus Companion to Multivariate Analysis. Springer. All is working very good in this environment. I am very impressed. I like the possibility to use R without installation complications with my iPhone, iPad or HTC One. The answers are send very fast, the idea to use a chat for mathematics communication seems to be especially suited to beginners: direct dive in, OS as you like, working anywhere, talking over distance, communicate with your peers or students (share code or examples etc even during a lesson - if a beamer is not available) etc. I would like to thank Enric for his valuable work to make the great work of the R team accessible to smartphones and tablets. I think that Tele_R is a very comfortable tool for teaching and learning R at an undergraduate level. And I would like to hear about the experiences, opinions or ideas of other members of the R community with respect of the use of Tele_R. I hope that this is not the wrong list to say these words. Best, Wolfgang Lindner Leichlingen, Germany __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] not a Stata version 5-12 .dta file
Is the file publicly available? What is the URL? Best, Ista On Thu, Mar 19, 2015 at 4:46 PM, Nicole Ford nicole.f...@me.com wrote: Hello, Ista. Honestly, I am uncertain. I don't have STATA -- I downloaded this from the data source website. I can't imagine it is 13 because the data are old (2006). I tried package readstata13 out of desperation, but didn't think it would resolve. Thanks for the suggestion! Sent from my iPhone On Mar 19, 2015, at 4:41 PM, Ista Zahn istaz...@gmail.com wrote: Hi Nicole, Is it a stata 13 data file? If so your best bet is to open it in Stata and use the saveold command to save it as a stata 12 file. Best, Ista On Thu, Mar 19, 2015 at 3:00 PM, Nicole Ford nicole.f...@me.com wrote: Hello, I recently updated to the newest version of R and I am encountering issues. Please find my error and session info below. My data are attached. I have tried the readstata13 package just in case to no avail. Unless I am missing something, google isn’t helping. Thank you in advance. error: dat - read.dta(file.choose()) Error in read.dta(file.choose()) : not a Stata version 5-12 .dta file 2015-03-19 14:14:21.445 R[398:5728] Unable to simultaneously satisfy constraints: ( NSAutoresizingMaskLayoutConstraint:0x608000490bd0 h=-- v=-- H:|-(0)-[NSView:0x6012eba0] (Names: '|':FIFinderView:0x60363a80 ), NSAutoresizingMaskLayoutConstraint:0x608000490e50 h=-- v=-- H:[NSView:0x6012eba0]-(0)-| (Names: '|':FIFinderView:0x60363a80 ), NSAutoresizingMaskLayoutConstraint:0x608000491120 h=-- v=-- H:|-(0)-[FIFinderView:0x60363a80] (Names: '|':NSNavFinderViewFileBrowser:0x608000377400 ), NSAutoresizingMaskLayoutConstraint:0x608000491170 h=-- v=-- H:[FIFinderView:0x60363a80]-(0)-| (Names: '|':NSNavFinderViewFileBrowser:0x608000377400 ), NSAutoresizingMaskLayoutConstraint:0x608000491350 h=-- v=-- H:[NSNavFinderViewFileBrowser:0x608000377400(585)], NSLayoutConstraint:0x60482d50 H:|-(0)-[NSView:0x6012e380] (Names: '|':NSView:0x6012eba0 ), NSLayoutConstraint:0x60482da0 H:[NSView:0x6012e380]-(0)-| (Names: '|':NSView:0x6012eba0 ), NSLayoutConstraint:0x604816d0 H:[FILocationPopUp:0x601f2800(207)], NSLayoutConstraint:0x60482a30 NSView:0x6012e380.centerX == FILocationPopUp:0x601f2800.centerX, NSLayoutConstraint:0x604825d0 H:[FILocationPopUp:0x601f2800]-(=10)-[SGTSearchField:0x603a5160], NSLayoutConstraint:0x60482b70 H:[SGTSearchField:0x603a5160]-(11)-| (Names: '|':NSView:0x6012e380 ), NSLayoutConstraint:0x604814f0 H:[SGTSearchField:0x603a5160(=218)] ) Will attempt to recover by breaking constraint NSLayoutConstraint:0x604814f0 H:[SGTSearchField:0x603a5160(=218)] Set the NSUserDefault NSConstraintBasedLayoutVisualizeMutuallyExclusiveConstraints to YES to have -[NSWindow visualizeConstraints:] automatically called when this happens. And/or, break on objc_exception_throw to catch this in the debugger. sessionInfo() Session Info: R version 3.1.3 (2015-03-09) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X 10.10.1 (Yosemite) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] effects_3.0-3 lattice_0.20-30 lme4_1.1-7 Rcpp_0.11.2 Matrix_1.1-5runjags_1.2.1-0 sm_2.2-5.4 foreign_0.8-63 car_2.0-25 loaded via a namespace (and not attached): [1] coda_0.16-1 colorspace_1.2-4 grid_3.1.3 MASS_7.3-39 mgcv_1.8-4 minqa_1.2.3 nlme_3.1-120 nloptr_1.0.0 nnet_7.3-9 [10] parallel_3.1.3 pbkrtest_0.4-2 quantreg_5.11SparseM_1.6 splines_3.1.3tools_3.1.3 ~n __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] not a Stata version 5-12 .dta file
Hi Nicole, Is it a stata 13 data file? If so your best bet is to open it in Stata and use the saveold command to save it as a stata 12 file. Best, Ista On Thu, Mar 19, 2015 at 3:00 PM, Nicole Ford nicole.f...@me.com wrote: Hello, I recently updated to the newest version of R and I am encountering issues. Please find my error and session info below. My data are attached. I have tried the readstata13 package just in case to no avail. Unless I am missing something, google isn’t helping. Thank you in advance. error: dat - read.dta(file.choose()) Error in read.dta(file.choose()) : not a Stata version 5-12 .dta file 2015-03-19 14:14:21.445 R[398:5728] Unable to simultaneously satisfy constraints: ( NSAutoresizingMaskLayoutConstraint:0x608000490bd0 h=-- v=-- H:|-(0)-[NSView:0x6012eba0] (Names: '|':FIFinderView:0x60363a80 ), NSAutoresizingMaskLayoutConstraint:0x608000490e50 h=-- v=-- H:[NSView:0x6012eba0]-(0)-| (Names: '|':FIFinderView:0x60363a80 ), NSAutoresizingMaskLayoutConstraint:0x608000491120 h=-- v=-- H:|-(0)-[FIFinderView:0x60363a80] (Names: '|':NSNavFinderViewFileBrowser:0x608000377400 ), NSAutoresizingMaskLayoutConstraint:0x608000491170 h=-- v=-- H:[FIFinderView:0x60363a80]-(0)-| (Names: '|':NSNavFinderViewFileBrowser:0x608000377400 ), NSAutoresizingMaskLayoutConstraint:0x608000491350 h=-- v=-- H:[NSNavFinderViewFileBrowser:0x608000377400(585)], NSLayoutConstraint:0x60482d50 H:|-(0)-[NSView:0x6012e380] (Names: '|':NSView:0x6012eba0 ), NSLayoutConstraint:0x60482da0 H:[NSView:0x6012e380]-(0)-| (Names: '|':NSView:0x6012eba0 ), NSLayoutConstraint:0x604816d0 H:[FILocationPopUp:0x601f2800(207)], NSLayoutConstraint:0x60482a30 NSView:0x6012e380.centerX == FILocationPopUp:0x601f2800.centerX, NSLayoutConstraint:0x604825d0 H:[FILocationPopUp:0x601f2800]-(=10)-[SGTSearchField:0x603a5160], NSLayoutConstraint:0x60482b70 H:[SGTSearchField:0x603a5160]-(11)-| (Names: '|':NSView:0x6012e380 ), NSLayoutConstraint:0x604814f0 H:[SGTSearchField:0x603a5160(=218)] ) Will attempt to recover by breaking constraint NSLayoutConstraint:0x604814f0 H:[SGTSearchField:0x603a5160(=218)] Set the NSUserDefault NSConstraintBasedLayoutVisualizeMutuallyExclusiveConstraints to YES to have -[NSWindow visualizeConstraints:] automatically called when this happens. And/or, break on objc_exception_throw to catch this in the debugger. sessionInfo() Session Info: R version 3.1.3 (2015-03-09) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X 10.10.1 (Yosemite) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] effects_3.0-3 lattice_0.20-30 lme4_1.1-7 Rcpp_0.11.2 Matrix_1.1-5runjags_1.2.1-0 sm_2.2-5.4 foreign_0.8-63 car_2.0-25 loaded via a namespace (and not attached): [1] coda_0.16-1 colorspace_1.2-4 grid_3.1.3 MASS_7.3-39 mgcv_1.8-4 minqa_1.2.3 nlme_3.1-120 nloptr_1.0.0 nnet_7.3-9 [10] parallel_3.1.3 pbkrtest_0.4-2 quantreg_5.11SparseM_1.6 splines_3.1.3tools_3.1.3 ~n __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] not a Stata version 5-12 .dta file
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Re: [R] Timestamp of exported files not updated when the file name is overwritten (ggsave)
I just tried the example for 'ggsave' and waited a minute between each run, and the time modified for the file name was correct in that it showed a different time when run the second time. Please post the code you are running, the system you are using and then an example of what the times are. Are you looking at the time 'modified' or 'created'; this will make a difference. So a few more particulars about your problem would be helpful. Try running the example for ggsave as I did and see if the times change. Jim Holtman Data Munger Guru What is the problem that you are trying to solve? Tell me what you want to do, not how you want to do it. On Thu, Mar 19, 2015 at 4:48 AM, David Villegas Ríos chir...@gmail.com wrote: Hi. I have a script in which I export some plots to a folder in my PC. The plots are exported with the function ggsave (in ggplot2). Whenever I re-run the code and export updated plots, the name of the exported file is overwritten (as expected) but the timestamp is not updated what turns it very difficult to locate them, sometimes. Any thought or solution for this issue? Thanks, David [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
