[R] Problems downloading and installing nlme under Linux Mint 15
I am running R under Linux Mint 15 and trying to download and install nlme. During the download I get an error message: Warning message: In install.packages(nlme) : installation of package ‘nlme’ had non-zero exit status When I try to load the package, I get an error message library(nlme) Error: package ‘nlme’ was built before R 3.0.0: please re-install it Why am I getting the error message, and what can I do to fix the problem? Please see output of R session below. Thank you, John version platform i486-pc-linux-gnu arch i486 os linux-gnu system i486, linux-gnu status major 3 minor 0.1 year 2013 month 05 day16 svn rev62743 language R version.string R version 3.0.1 (2013-05-16) nickname Good Sport install.packages(nlme) Installing package into ‘/home/john/R/i486-pc-linux-gnu-library/3.0’ (as ‘lib’ is unspecified) --- Please select a CRAN mirror for use in this session --- trying URL 'http://watson.nci.nih.gov/cran_mirror/src/contrib/nlme_3.1-113.tar.gz' Content type 'application/octet-stream' length 752188 bytes (734 Kb) opened URL == downloaded 734 Kb * installing *source* package ‘nlme’ ... ** package ‘nlme’ successfully unpacked and MD5 sums checked ** libs gfortran -fpic -O2 -pipe -g -c chol.f -o chol.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c corStruct.c -o corStruct.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c gnls.c -o gnls.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c init.c -o init.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c matrix.c -o matrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c nlOptimizer.c -o nlOptimizer.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c nlme.c -o nlme.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c nlmefit.c -o nlmefit.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c nls.c -o nls.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c pdMat.c -o pdMat.o gfortran -fpic -O2 -pipe -g -c rs.f -o rs.o gcc -std=gnu99 -shared -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o nls.o pdMat.o rs.o -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR installing to /home/john/R/i486-pc-linux-gnu-library/3.0/nlme/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error : package ‘lattice’ was built before R 3.0.0: please re-install it ERROR: lazy loading failed for package ‘nlme’ * removing ‘/home/john/R/i486-pc-linux-gnu-library/3.0/nlme’ The downloaded source packages are in ‘/tmp/Rtmpo7eFZf/downloaded_packages’ Warning message: In install.packages(nlme) : installation of package ‘nlme’ had non-zero exit status library(nlme) Error: package ‘nlme’ was built before R 3.0.0: please re-install it John David Sorkin M.D., Ph.D. Professor of Medicine Chief, Biostatistics and Informatics University of Maryland School of Medicine Division of Gerontology and Geriatric Medicine Baltimore VA Medical Center 10 North Greene Street GRECC (BT/18/GR) Baltimore, MD 21201-1524 (Phone) 410-605-7119 (Fax) 410-605-7913 (Please call phone number above prior to faxing) CThis email message, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized use, disclosure or distribution is prohibited. If you are not the intended recipient, please contact the sender by reply email and destroy all copies of the original message. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Problems downloading and installing nlme under Linux Mint 15
There is the error message: Error : package ‘lattice’ was built before R 3.0.0: please re-install it Perhaps the problem lies there. Clint BowmanINTERNET: cl...@ecy.wa.gov Air Quality Modeler INTERNET: cl...@math.utah.edu Department of Ecology VOICE: (360) 407-6815 PO Box 47600FAX:(360) 407-7534 Olympia, WA 98504-7600 USPS: PO Box 47600, Olympia, WA 98504-7600 Parcels:300 Desmond Drive, Lacey, WA 98503-1274 On Tue, 21 Jan 2014, John Sorkin wrote: I am running R under Linux Mint 15 and trying to download and install nlme. During the download I get an error message: Warning message: In install.packages(nlme) : installation of package ‘nlme’ had non-zero exit status When I try to load the package, I get an error message library(nlme) Error: package ‘nlme’ was built before R 3.0.0: please re-install it Why am I getting the error message, and what can I do to fix the problem? Please see output of R session below. Thank you, John version platform i486-pc-linux-gnu arch i486 os linux-gnu system i486, linux-gnu status major 3 minor 0.1 year 2013 month 05 day16 svn rev62743 language R version.string R version 3.0.1 (2013-05-16) nickname Good Sport install.packages(nlme) Installing package into ‘/home/john/R/i486-pc-linux-gnu-library/3.0’ (as ‘lib’ is unspecified) --- Please select a CRAN mirror for use in this session --- trying URL 'http://watson.nci.nih.gov/cran_mirror/src/contrib/nlme_3.1-113.tar.gz' Content type 'application/octet-stream' length 752188 bytes (734 Kb) opened URL == downloaded 734 Kb * installing *source* package ‘nlme’ ... ** package ‘nlme’ successfully unpacked and MD5 sums checked ** libs gfortran -fpic -O2 -pipe -g -c chol.f -o chol.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c corStruct.c -o corStruct.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c gnls.c -o gnls.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c init.c -o init.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c matrix.c -o matrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c nlOptimizer.c -o nlOptimizer.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c nlme.c -o nlme.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c nlmefit.c -o nlmefit.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c nls.c -o nls.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c pdMat.c -o pdMat.o gfortran -fpic -O2 -pipe -g -c rs.f -o rs.o gcc -std=gnu99 -shared -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o nls.o pdMat.o rs.o -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR installing to /home/john/R/i486-pc-linux-gnu-library/3.0/nlme/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error : package ‘lattice’ was built before R 3.0.0: please re-install it ERROR: lazy loading failed for package ‘nlme’ * removing ‘/home/john/R/i486-pc-linux-gnu-library/3.0/nlme’ The downloaded source packages are in ‘/tmp/Rtmpo7eFZf/downloaded_packages’ Warning message: In install.packages(nlme) : installation of package ‘nlme’ had non-zero exit status library(nlme) Error: package ‘nlme’ was built before R 3.0.0: please re-install it John David Sorkin M.D., Ph.D. Professor of Medicine Chief, Biostatistics and Informatics University of Maryland School of Medicine Division of Gerontology and Geriatric Medicine Baltimore VA Medical Center 10 North Greene Street GRECC (BT/18/GR) Baltimore, MD 21201-1524 (Phone) 410-605-7119 (Fax) 410-605-7913 (Please call phone number above prior to faxing) CThis email message, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized use, disclosure or distribution is prohibited. If you are not the intended recipient, please contact the sender by reply email and destroy all copies of the original message. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Problems downloading and installing nlme under Linux Mint 15
Clint, Thank you! Problem solved. John John David Sorkin M.D., Ph.D. Professor of Medicine Chief, Biostatistics and Informatics University of Maryland School of Medicine Division of Gerontology and Geriatric Medicine Baltimore VA Medical Center 10 North Greene Street GRECC (BT/18/GR) Baltimore, MD 21201-1524 (Phone) 410-605-7119 (Fax) 410-605-7913 (Please call phone number above prior to faxing) Clint Bowman cl...@ecy.wa.gov 1/21/2014 6:57 PM There is the error message: Error : package ‘lattice’ was built before R 3.0.0: please re-install it Perhaps the problem lies there. Clint BowmanINTERNET:cl...@ecy.wa.gov Air Quality ModelerINTERNET:cl...@math.utah.edu Department of EcologyVOICE:(360) 407-6815 PO Box 47600FAX:(360) 407-7534 Olympia, WA 98504-7600 USPS: PO Box 47600, Olympia, WA 98504-7600 Parcels:300 Desmond Drive, Lacey, WA 98503-1274 On Tue, 21 Jan 2014, John Sorkin wrote: I am running R under Linux Mint 15 and trying to download and install nlme. During the download I get an error message: Warning message: In install.packages(nlme) : installation of package ‘nlme’ had non-zero exit status When I try to load the package, I get an error message library(nlme) Error: package ‘nlme’ was built before R 3.0.0: please re-install it Why am I getting the error message, and what can I do to fix the problem? Please see output of R session below. Thank you, John version platform i486-pc-linux-gnu arch i486 os linux-gnu system i486, linux-gnu status major 3 minor 0.1 year 2013 month 05 day16 svn rev62743 language R version.string R version 3.0.1 (2013-05-16) nickname Good Sport install.packages(nlme) Installing package into ‘/home/john/R/i486-pc-linux-gnu-library/3.0’ (as ‘lib’ is unspecified) --- Please select a CRAN mirror for use in this session --- trying URL 'http://watson.nci.nih.gov/cran_mirror/src/contrib/nlme_3.1-113.tar.gz' Content type 'application/octet-stream' length 752188 bytes (734 Kb) opened URL == downloaded 734 Kb * installing *source* package ‘nlme’ ... ** package ‘nlme’ successfully unpacked and MD5 sums checked ** libs gfortran -fpic -O2 -pipe -g -c chol.f -o chol.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c corStruct.c -o corStruct.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c gnls.c -o gnls.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c init.c -o init.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c matrix.c -o matrix.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c nlOptimizer.c -o nlOptimizer.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c nlme.c -o nlme.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c nlmefit.c -o nlmefit.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c nls.c -o nls.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -g -c pdMat.c -o pdMat.o gfortran -fpic -O2 -pipe -g -c rs.f -o rs.o gcc -std=gnu99 -shared -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o nls.o pdMat.o rs.o -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR installing to /home/john/R/i486-pc-linux-gnu-library/3.0/nlme/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error : package ‘lattice’ was built before R 3.0.0: please re-install it ERROR: lazy loading failed for package ‘nlme’ * removing ‘/home/john/R/i486-pc-linux-gnu-library/3.0/nlme’ The downloaded source packages are in ‘/tmp/Rtmpo7eFZf/downloaded_packages’ Warning message: In install.packages(nlme) : installation of package ‘nlme’ had non-zero exit status library(nlme) Error: package ‘nlme’ was built before R 3.0.0: please re-install it John David Sorkin M.D., Ph.D. Professor of Medicine Chief, Biostatistics and Informatics University of Maryland School of Medicine Division of Gerontology and Geriatric Medicine Baltimore VA Medical Center 10 North Greene Street GRECC (BT/18/GR) Baltimore, MD 21201-1524 (Phone) 410-605-7119 (Fax) 410-605-7913 (Please call phone number above prior to faxing) CThis email message, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized use, disclosure or distribution is prohibited. If you are not the intended recipient, please contact the sender by reply email and destroy all copies
