[R] install packages from R-forge SVN
R-helpers: I was curious if anyone developed a package/approach to installing packages directly from the R-forge SVN subsystem (rather than waiting for it to build)? I can, of course, SVN it command line but I was hoping for an install.packages(svn://) sort of approach. Cheers! --j -- Jonathan A. Greenberg, PhD Assistant Professor Global Environmental Analysis and Remote Sensing (GEARS) Laboratory Department of Geography and Geographic Information Science University of Illinois at Urbana-Champaign 259 Computing Applications Building, MC-150 605 East Springfield Avenue Champaign, IL 61820-6371 Phone: 217-300-1924 http://www.geog.illinois.edu/~jgrn/ AIM: jgrn307, MSN: jgrn...@hotmail.com, Gchat: jgrn307, Skype: jgrn3007 __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] install-packages
hello, i am new and I want to know how to install a packare on R thank you said filahi [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] install-packages
Try typing this into google search bar: [R] install packages The majority of the results on the first page will help you out. On Thu, Aug 1, 2013 at 8:43 PM, Said Filahi sa.fil...@gmail.com wrote: hello, i am new and I want to know how to install a packare on R thank you said filahi [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Michael Rennie, Research Scientist Fisheries and Oceans Canada, Freshwater Institute Winnipeg, Manitoba, CANADA [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] install packages and time-out
I use R / RStudio at work. Recently, I tried to download XLConnect package using install.packages(XLConnect) However, I got the following error message: Installing package(s) into 'WORKCOMPUTER SPECIFIC STUFF HERE Documents/R/win-library/2.15' (as 'lib' is unspecified) trying URL 'http://www.stats.bris.ac.uk/R/bin/windows/contrib/2.15/XLConnect_0.2-5.zip' Warning in install.packages : InternetOpenUrl failed: 'The operation timed out' Error in download.file(url, destfile, method, mode = wb, ...) : cannot open URL 'http://www.stats.bris.ac.uk/R/bin/windows/contrib/2.15/XLConnect_0.2-5.zip' Warning in install.packages : download of package 'XLConnect' failed I think the reason for the problem is that I'm in a corporate environment and our firewall spends 2-3 mins scanning the zip file before releasing it. I think the solution requires me to tell R to override (what I believe is) the 60 second time-out default setting when you run install.packages. At least I think install.packages calls download.file I need to extend the time-out window, so that the firewall can do its thing. Some notes, which I think are relevant: Ø Although I'm working in a corporate environment, I have worked with my IT team to ensure that HTTP/proxy measures allow on the fly package download, e.g. no problems with install.packages(ggplot2) Ø I've also tried using setInternet2(TRUE) before the above, which made no difference Ø I've also tried using: options(timeout=300) before the install.packages command, in order to attempt to force a five-minute window ; this had no affect Ø The target file does exist on Bristol's servers if you search for the website using internet explorer Ø I can download the package manually (although our security measures spend some time scanning this particular package). Once saved locally, I successfully run install.packages to load the file from the local drive, but that's hardly the way forward if I want to keep things up to date! Ø I have tried Imperial College's server, which also fails, so it's not a mirror issue. Ø I have run the same code at home to the same Bristol mirror and get no issues. A bit stuck, therefore! ** Atrium Underwriters Ltd is authorised and regulated by the Financial Services Authority. Atrium Insurance Agency Ltd is authorised and regulated by the Financial Services Authority. Atrium Insurance Agency (Asia) Pte. Ltd. is authorised and regulated by the Monetary Authority of Singapore. The information in this email, and in any of its attachments, is confidential and may be legally privileged. It is intended solely for the addressee. Access to this email, and to any of its attachments, by anyone else is unauthorised. If you are not the intended recipient, any disclosure, copying, distribution or any action taken or omitted to be taken in reliance on it, is prohibited and may be unlawful. If you have received this email in error please notify us immediately (by telephone on +44 (0)20 7327 4877 or by return email) and destroy the message, together with any attachments and all copies in your possession. Any views expressed in this email are not necessarily those of Atrium Underwriting Group Ltd or any of its subsidiaries. Atrium Underwriting Group Ltd, Room 790, Lloyd's, 1 Lime Street, London EC3M 7DQ. Registered in England No. 2860390. Atrium Insurance Agency Ltd, Room 790, Lloyd's, 1 Lime Street, London EC3M 7DQ. Registered in England No. 5993519. Atrium Underwriters Ltd, Room 790, Lloyd's, 1 Lime Street, London EC3M 7DQ. Registered in England No. 1958863 Registered Office as above This footnote also confirms that this email message has been swept by MIMECast for the presence of computer viruses. ** [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] install packages from intranet
Hi, I'm new to R. Apologies if this is a simple query, I've searched the mailing lists and docs but can't find a solution to my problem. I'm trying to make some packages available on our intranet. During development the 'intranet' is a webserver running on localhost. * When I call install.packages I get a mesage about not being able to access 'index for repository'. * The directories are viewable and can be seen through a web browser. * Web server is IIS running on Winows 7. * I've used the same paths on the web server as where the packages are located in the CRAN mirror's. * I've tried setting setInternet2(TRUE), which was already set. r - getOption(repos); r[CRAN] = http://localhost; r[CRANextra] = http://localhost/pub/RWin; options(repos=r) r CRAN CRANextra http://localhost; http://localhost/pub/RWin; install.packages(abind) Warning: unable to access index for repository http://localhost/bin/windows/cont rib/2.13 Warning: unable to access index for repository http://localhost/pub/RWin/bin/win dows/contrib/2.13 Warning message: In getDependencies(pkgs, dependencies, available, lib) : package 'abind' is not available (for R version 2.13.1) OR install.packages(abind, contriburl=http://localhost/bin/windows/contrib/2.13;) Warning: unable to access index for repository http://localhost/bin/windows/contrib/2.13 Warning message: In getDependencies(pkgs, dependencies, available, lib) : package ‘abind’ is not available (for R version 2.13.1) OR install.packages(abind, contriburl=http://localhost/bin/windows/contrib/2.13/abind_1.3-0.zip;) Warning: unable to access index for repository http://localhost/bin/windows/contrib/2.13/abind_1.3-0.zip Warning message: In getDependencies(pkgs, dependencies, available, lib) : package ‘abind’ is not available (for R version 2.13.1) Can anyone give me any clues as to what I'm doing wrong? Does R need some kind of index file to map between the name 'abind' and the zip filename? Many thanks Peter. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] install packages from intranet
On 12.08.2011 11:40, Peter Aberline wrote: Hi, I'm new to R. Apologies if this is a simple query, I've searched the mailing lists and docs but can't find a solution to my problem. I'm trying to make some packages available on our intranet. During development the 'intranet' is a webserver running on localhost. * When I call install.packages I get a mesage about not being able to access 'index for repository'. * The directories are viewable and can be seen through a web browser. * Web server is IIS running on Winows 7. * I've used the same paths on the web server as where the packages are located in the CRAN mirror's. * I've tried setting setInternet2(TRUE), which was already set. r- getOption(repos); r[CRAN] = http://localhost; r[CRANextra] = http://localhost/pub/RWin; options(repos=r) r CRAN CRANextra http://localhost; http://localhost/pub/RWin; install.packages(abind) Warning: unable to access index for repository http://localhost/bin/windows/cont rib/2.13 Warning: unable to access index for repository http://localhost/pub/RWin/bin/win dows/contrib/2.13 Warning message: In getDependencies(pkgs, dependencies, available, lib) : package 'abind' is not available (for R version 2.13.1) OR install.packages(abind, contriburl=http://localhost/bin/windows/contrib/2.13;) Warning: unable to access index for repository http://localhost/bin/windows/contrib/2.13 Warning message: In getDependencies(pkgs, dependencies, available, lib) : package ‘abind’ is not available (for R version 2.13.1) OR install.packages(abind, contriburl=http://localhost/bin/windows/contrib/2.13/abind_1.3-0.zip;) Warning: unable to access index for repository http://localhost/bin/windows/contrib/2.13/abind_1.3-0.zip Warning message: In getDependencies(pkgs, dependencies, available, lib) : package ‘abind’ is not available (for R version 2.13.1) Can anyone give me any clues as to what I'm doing wrong? Does R need some kind of index file to map between the name 'abind' and the zip filename? Right, the PACKAGES file. You will find it in any repository. If you only have a selectio of packages on your local server, you can use write_PACKAGES() from the tools package to generate your own. Anyway, if you make a local repository available: Does it make sense to just install all of them into a library that can be accessed from all machines you aimed at with the local repository? Uwe Ligges Many thanks Peter. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] install packages in Windows Vista
Dear R experts... I would really appreciate your suggestions in installing a package in Windows Vista... I am unable to install a package on a windows vista based computer, in spite of running it as an administrator. The package xpose4.2.1 is available from https://sourceforge.net/projects/xpose/files/Xpose4/Xpose_4.2.1/xpose4_4.2.1_win32.zip/download Following is the error message when I try to install the package from the Rgui command line... I get similar errors when I try to install the packages from Rgui (Packages | Install packages from local zip files) menu, but with default lib=C:/Users/santosh/Documents/R/win-library/2.11 . install.packages(C:/Users/santosh/Downloads/xpose4_4.2.1_win32.zip,repos=NULL,lib=C:/Program Files/R/R-2.11.1/library) Error in gzfile(file, r) : cannot open the connection In addition: Warning message: In gzfile(file, r) : cannot open compressed file 'xpose4_4.2.1_win32/DESCRIPTION', probable reason 'No such file or directory' However, I see file folder in which the library related folders are installed.. Thanks again, Santosh [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Install packages not working in latest version?
Seems that the latest version R version 2.9.0 (2009-04-17) has a glitch and will not install packages. Issue with unzipping? Works fine with R version 2.8.1 (2008-12-22) install.packages(ff) --- Please select a CRAN mirror for use in this session --- trying URL 'http://cran.fhcrc.org/bin/windows/contrib/2.9/ff_2.0.1.zip' Content type 'application/zip' length 779664 bytes (761 Kb) opened URL downloaded 761 Kb Error in .Internal(int.unzip(zipname, NULL, dest)) : no internal function int.unzip Bruce __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Install packages not working in latest version?
Neotropical bat risk assessments wrote: Seems that the latest version R version 2.9.0 (2009-04-17) has a glitch and will not install packages. Issue with unzipping? Works fine with R version 2.8.1 (2008-12-22) install.packages(ff) --- Please select a CRAN mirror for use in this session --- trying URL 'http://cran.fhcrc.org/bin/windows/contrib/2.9/ff_2.0.1.zip' Content type 'application/zip' length 779664 bytes (761 Kb) opened URL downloaded 761 Kb Error in .Internal(int.unzip(zipname, NULL, dest)) : no internal function int.unzip Please check if you have old base packages in a library that is used before the standard library in R_HOME/library when you start R-2.9.0. Uwe Ligges Bruce __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Install Packages in Windows Vista
I can't seem to install packages to R. Each time I get the following output...for example bundle 'VR' successfully unpacked and MD5 sums checked The downloaded packages are in C:\Users\DarkBlue\AppData\Local\Temp\RtmpQrD7Le\downloaded_packages updating HTML package descriptions Warning message: In file.create(f.tg) : cannot create file 'C:\PROGRA~1\R\R/doc/html/packages.html', reason 'Permission denied' -- View this message in context: http://www.nabble.com/Install-Packages-in-Windows-Vista-tp18228954p18228954.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Install Packages in Windows Vista
Run R as the Administrator. Install the packages. Then run as an ordinary user. Charles Annis, P.E. [EMAIL PROTECTED] phone: 561-352-9699 eFax: 614-455-3265 http://www.StatisticalEngineering.com -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of nicholasw22 Sent: Tuesday, July 01, 2008 10:11 PM To: r-help@r-project.org Subject: [R] Install Packages in Windows Vista I can't seem to install packages to R. Each time I get the following output...for example bundle 'VR' successfully unpacked and MD5 sums checked The downloaded packages are in C:\Users\DarkBlue\AppData\Local\Temp\RtmpQrD7Le\downloaded_packages updating HTML package descriptions Warning message: In file.create(f.tg) : cannot create file 'C:\PROGRA~1\R\R/doc/html/packages.html', reason 'Permission denied' -- View this message in context: http://www.nabble.com/Install-Packages-in-Windows-Vista-tp18228954p18228954. html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Install Packages in Windows Vista
You do that by right clicking the R icon on the Windows Desktop and then choosing Run As Administrator . Alternately grab el.js and Rgui.bat from the batchfiles distribution -- home page is at: http://batchfiles.googlecode.com and place them anywhere in your path and then you can just do this from the command line to start up R as an elevated process (you will be asked for confirmation): el Rgui (Omitting el starts it up normally.) On Tue, Jul 1, 2008 at 11:09 PM, Charles Annis, P.E. [EMAIL PROTECTED] wrote: Run R as the Administrator. Install the packages. Then run as an ordinary user. Charles Annis, P.E. [EMAIL PROTECTED] phone: 561-352-9699 eFax: 614-455-3265 http://www.StatisticalEngineering.com -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of nicholasw22 Sent: Tuesday, July 01, 2008 10:11 PM To: r-help@r-project.org Subject: [R] Install Packages in Windows Vista I can't seem to install packages to R. Each time I get the following output...for example bundle 'VR' successfully unpacked and MD5 sums checked The downloaded packages are in C:\Users\DarkBlue\AppData\Local\Temp\RtmpQrD7Le\downloaded_packages updating HTML package descriptions Warning message: In file.create(f.tg) : cannot create file 'C:\PROGRA~1\R\R/doc/html/packages.html', reason 'Permission denied' -- View this message in context: http://www.nabble.com/Install-Packages-in-Windows-Vista-tp18228954p18228954. html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
