d.le...@warwick.ac.uk wrote:
Hello,
In limmaGUI, after running a linear model for a single gene time point
(mutant vs control), the venn-diagram for differentially expressed genes
with a p-value cut-off gives a different number than the top-table with
the same cut-off (2600 vs. 791).
I have seen the same thing happen before for multiple time points (when
the venn-diagram is more relevant)
Any ideas what is going on?
limmaGUI is a Bioconductor package; ask on the Bioconductor mailing list.
http://bioconductor.org/docs/mailList.html
don't forget to consult packageDescription() and include the maintainer
(who is in the best position to help).
Martin
Thanks
Danny
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