[R] mac os X: mprobit fails to install
Hi all, any chance that someone got through the installation problem of mprobit on mac os X? Stephane __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] mac os X: mprobit fails to install
Stephane - The check log indicated that malloc.h couldn't be found. Since that header file is located in /usr/include/sys on Macs, you could do the following: 1. Download mprobit_0.9-2.tar.gz from your local CRAN mirror. 2. At a terminal, type PKG_CFLAGS=-I/usr/include/sys R CMD INSTALL mprobit_0.9-2.tar.gz They'll be some warning messages, but the package should get built. - Phil Spector Statistical Computing Facility Department of Statistics UC Berkeley spec...@stat.berkeley.edu On Sun, 22 Nov 2009, stephane Luchini wrote: Hi all, any chance that someone got through the installation problem of mprobit on mac os X? Stephane __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] mac os X: mprobit fails to install
I have tried your command but without success. Any idea? Here is my log: Macbook:$ PKG_CFLAGS=-I/usr/include/sys R CMD INSTALL mprobit_0.9-2.tar.gz * Installing to library ‘/Users/stephaneluchini/Library/R/2.9/library’ * Installing *source* package ‘mprobit’ ... ** libs ** arch - i386 sh: make: command not found ERREUR : compilation failed pour le package ‘mprobit’ * Removing ‘/Users/stephaneluchini/Library/R/2.9/library/mprobit’ 2009/11/22 Phil Spector spec...@stat.berkeley.edu: Stephane - The check log indicated that malloc.h couldn't be found. Since that header file is located in /usr/include/sys on Macs, you could do the following: 1. Download mprobit_0.9-2.tar.gz from your local CRAN mirror. 2. At a terminal, type PKG_CFLAGS=-I/usr/include/sys R CMD INSTALL mprobit_0.9-2.tar.gz They'll be some warning messages, but the package should get built. - Phil Spector Statistical Computing Facility Department of Statistics UC Berkeley spec...@stat.berkeley.edu On Sun, 22 Nov 2009, stephane Luchini wrote: Hi all, any chance that someone got through the installation problem of mprobit on mac os X? Stephane __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] mac os X: mprobit fails to install
There were quite a few implicit declaration warning messages when I followed Phil's advice, but I do seem to get a complete build on a Mac 10.5.8 running 64 bit R 2.10.0. Have you installed the Xcode package? The gcc-4.2? -- David. On Nov 22, 2009, at 3:15 PM, SL wrote: I have tried your command but without success. Any idea? Here is my log: Macbook:$ PKG_CFLAGS=-I/usr/include/sys R CMD INSTALL mprobit_0.9-2.tar.gz * Installing to library ‘/Users/stephaneluchini/Library/R/2.9/library’ * Installing *source* package ‘mprobit’ ... ** libs ** arch - i386 sh: make: command not found ERREUR : compilation failed pour le package ‘mprobit’ * Removing ‘/Users/stephaneluchini/Library/R/2.9/library/mprobit’ 2009/11/22 Phil Spector spec...@stat.berkeley.edu: Stephane - The check log indicated that malloc.h couldn't be found. Since that header file is located in /usr/include/sys on Macs, you could do the following: 1. Download mprobit_0.9-2.tar.gz from your local CRAN mirror. 2. At a terminal, type PKG_CFLAGS=-I/usr/include/sys R CMD INSTALL mprobit_0.9-2.tar.gz They'll be some warning messages, but the package should get built. - Phil Spector Statistical Computing Facility Department of Statistics UC Berkeley spec...@stat.berkeley.edu On Sun, 22 Nov 2009, stephane Luchini wrote: Hi all, any chance that someone got through the installation problem of mprobit on mac os X? Stephane __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. David Winsemius, MD Heritage Laboratories West Hartford, CT __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] mac os X: mprobit fails to install
Thanks. I have 10.5.8 with R 2.10.0 now (i still had 2.9 in my previous messages). I also have gcc-4.2 installed but no Xcode package. It still fails to install - can it be the Xcode package? Where can I find it - I don't have my install CDs with me and will not get them soon? Stephane 2009/11/22 David Winsemius dwinsem...@comcast.net: There were quite a few implicit declaration warning messages when I followed Phil's advice, but I do seem to get a complete build on a Mac 10.5.8 running 64 bit R 2.10.0. Have you installed the Xcode package? The gcc-4.2? -- David. On Nov 22, 2009, at 3:15 PM, SL wrote: I have tried your command but without success. Any idea? Here is my log: Macbook:$ PKG_CFLAGS=-I/usr/include/sys R CMD INSTALL mprobit_0.9-2.tar.gz * Installing to library ‘/Users/stephaneluchini/Library/R/2.9/library’ * Installing *source* package ‘mprobit’ ... ** libs ** arch - i386 sh: make: command not found ERREUR : compilation failed pour le package ‘mprobit’ * Removing ‘/Users/stephaneluchini/Library/R/2.9/library/mprobit’ 2009/11/22 Phil Spector spec...@stat.berkeley.edu: Stephane - The check log indicated that malloc.h couldn't be found. Since that header file is located in /usr/include/sys on Macs, you could do the following: 1. Download mprobit_0.9-2.tar.gz from your local CRAN mirror. 2. At a terminal, type PKG_CFLAGS=-I/usr/include/sys R CMD INSTALL mprobit_0.9-2.tar.gz They'll be some warning messages, but the package should get built. - Phil Spector Statistical Computing Facility Department of Statistics UC Berkeley spec...@stat.berkeley.edu On Sun, 22 Nov 2009, stephane Luchini wrote: Hi all, any chance that someone got through the installation problem of mprobit on mac os X? Stephane __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. David Winsemius, MD Heritage Laboratories West Hartford, CT __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] mac os X: mprobit fails to install
On Nov 22, 2009, at 4:00 PM, stephane Luchini wrote: Thanks. I have 10.5.8 with R 2.10.0 now (i still had 2.9 in my previous messages). I also have gcc-4.2 installed but no Xcode package. It still fails to install - can it be the Xcode package? Where can I find it - I don't have my install CDs with me and will not get them soon? Xcode is distributed free by Apple through its developer program. All you need to do is register, again, free, or at least it used to be so. You could also check the tools section of CRAN. I am not sufficient UNIXified to be an authoritative source on these issues. -- David Stephane 2009/11/22 David Winsemius dwinsem...@comcast.net: There were quite a few implicit declaration warning messages when I followed Phil's advice, but I do seem to get a complete build on a Mac 10.5.8 running 64 bit R 2.10.0. Have you installed the Xcode package? The gcc-4.2? -- David. On Nov 22, 2009, at 3:15 PM, SL wrote: I have tried your command but without success. Any idea? Here is my log: Macbook:$ PKG_CFLAGS=-I/usr/include/sys R CMD INSTALL mprobit_0.9-2.tar.gz * Installing to library ‘/Users/stephaneluchini/Library/R/2.9/ library’ * Installing *source* package ‘mprobit’ ... ** libs ** arch - i386 sh: make: command not found ERREUR : compilation failed pour le package ‘mprobit’ * Removing ‘/Users/stephaneluchini/Library/R/2.9/library/mprobit’ 2009/11/22 Phil Spector spec...@stat.berkeley.edu: Stephane - The check log indicated that malloc.h couldn't be found. Since that header file is located in /usr/include/sys on Macs, you could do the following: 1. Download mprobit_0.9-2.tar.gz from your local CRAN mirror. 2. At a terminal, type PKG_CFLAGS=-I/usr/include/sys R CMD INSTALL mprobit_0.9-2.tar.gz They'll be some warning messages, but the package should get built. - Phil Spector Statistical Computing Facility Department of Statistics UC Berkeley spec...@stat.berkeley.edu On Sun, 22 Nov 2009, stephane Luchini wrote: Hi all, any chance that someone got through the installation problem of mprobit on mac os X? Stephane __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. David Winsemius, MD Heritage Laboratories West Hartford, CT __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. David Winsemius, MD Heritage Laboratories West Hartford, CT __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] mac os X: mprobit fails to install
Xcode is available for download here: http://developer.apple.com/technology/xcode.html As David noted, you do need to register, but it is free. Note also that it is a 750 Mb download. HTH, Marc Schwartz On Nov 22, 2009, at 3:11 PM, David Winsemius wrote: On Nov 22, 2009, at 4:00 PM, stephane Luchini wrote: Thanks. I have 10.5.8 with R 2.10.0 now (i still had 2.9 in my previous messages). I also have gcc-4.2 installed but no Xcode package. It still fails to install - can it be the Xcode package? Where can I find it - I don't have my install CDs with me and will not get them soon? Xcode is distributed free by Apple through its developer program. All you need to do is register, again, free, or at least it used to be so. You could also check the tools section of CRAN. I am not sufficient UNIXified to be an authoritative source on these issues. -- David Stephane 2009/11/22 David Winsemius dwinsem...@comcast.net: There were quite a few implicit declaration warning messages when I followed Phil's advice, but I do seem to get a complete build on a Mac 10.5.8 running 64 bit R 2.10.0. Have you installed the Xcode package? The gcc-4.2? -- David. On Nov 22, 2009, at 3:15 PM, SL wrote: I have tried your command but without success. Any idea? Here is my log: Macbook:$ PKG_CFLAGS=-I/usr/include/sys R CMD INSTALL mprobit_0.9-2.tar.gz * Installing to library ‘/Users/stephaneluchini/Library/R/2.9/ library’ * Installing *source* package ‘mprobit’ ... ** libs ** arch - i386 sh: make: command not found ERREUR : compilation failed pour le package ‘mprobit’ * Removing ‘/Users/stephaneluchini/Library/R/2.9/library/mprobit’ 2009/11/22 Phil Spector spec...@stat.berkeley.edu: Stephane - The check log indicated that malloc.h couldn't be found. Since that header file is located in /usr/include/sys on Macs, you could do the following: 1. Download mprobit_0.9-2.tar.gz from your local CRAN mirror. 2. At a terminal, type PKG_CFLAGS=-I/usr/include/sys R CMD INSTALL mprobit_0.9-2.tar.gz They'll be some warning messages, but the package should get built. - Phil Spector Statistical Computing Facility Department of Statistics UC Berkeley spec...@stat.berkeley.edu On Sun, 22 Nov 2009, stephane Luchini wrote: Hi all, any chance that someone got through the installation problem of mprobit on mac os X? Stephane __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. David Winsemius, MD Heritage Laboratories West Hartford, CT __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. David Winsemius, MD Heritage Laboratories West Hartford, CT __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] mac os X: mprobit fails to install
Thanks to all, that was it! Xcode needed to be installed. For those who did not update to snow Leopard, things could be a bit tricky because apple did delete links to previous versions in search engines. On their site, one has to search through their download section. For snow leopard: version 3.2.1 For leopard : version 3.1.4 did the trick for me. I now can load mprobit in R - I still have to do some testing. Thanks again. Stephane 2009/11/22 Marc Schwartz marc_schwa...@me.com: Xcode is available for download here: http://developer.apple.com/technology/xcode.html As David noted, you do need to register, but it is free. Note also that it is a 750 Mb download. HTH, Marc Schwartz On Nov 22, 2009, at 3:11 PM, David Winsemius wrote: On Nov 22, 2009, at 4:00 PM, stephane Luchini wrote: Thanks. I have 10.5.8 with R 2.10.0 now (i still had 2.9 in my previous messages). I also have gcc-4.2 installed but no Xcode package. It still fails to install - can it be the Xcode package? Where can I find it - I don't have my install CDs with me and will not get them soon? Xcode is distributed free by Apple through its developer program. All you need to do is register, again, free, or at least it used to be so. You could also check the tools section of CRAN. I am not sufficient UNIXified to be an authoritative source on these issues. -- David Stephane 2009/11/22 David Winsemius dwinsem...@comcast.net: There were quite a few implicit declaration warning messages when I followed Phil's advice, but I do seem to get a complete build on a Mac 10.5.8 running 64 bit R 2.10.0. Have you installed the Xcode package? The gcc-4.2? -- David. On Nov 22, 2009, at 3:15 PM, SL wrote: I have tried your command but without success. Any idea? Here is my log: Macbook:$ PKG_CFLAGS=-I/usr/include/sys R CMD INSTALL mprobit_0.9-2.tar.gz * Installing to library ‘/Users/stephaneluchini/Library/R/2.9/library’ * Installing *source* package ‘mprobit’ ... ** libs ** arch - i386 sh: make: command not found ERREUR : compilation failed pour le package ‘mprobit’ * Removing ‘/Users/stephaneluchini/Library/R/2.9/library/mprobit’ 2009/11/22 Phil Spector spec...@stat.berkeley.edu: Stephane - The check log indicated that malloc.h couldn't be found. Since that header file is located in /usr/include/sys on Macs, you could do the following: 1. Download mprobit_0.9-2.tar.gz from your local CRAN mirror. 2. At a terminal, type PKG_CFLAGS=-I/usr/include/sys R CMD INSTALL mprobit_0.9-2.tar.gz They'll be some warning messages, but the package should get built. - Phil Spector Statistical Computing Facility Department of Statistics UC Berkeley spec...@stat.berkeley.edu On Sun, 22 Nov 2009, stephane Luchini wrote: Hi all, any chance that someone got through the installation problem of mprobit on mac os X? Stephane __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. David Winsemius, MD Heritage Laboratories West Hartford, CT __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. David Winsemius, MD Heritage Laboratories West Hartford, CT __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
