Re: [R] Problem with figures
Thanks, Yihui. It turns out that getting rid of the preview option is not
enough and one must include tikz and print to make it work.
Shige
On Sun, Dec 2, 2012 at 11:10 PM, Yihui Xie x...@yihui.name wrote:
fig=TRUE is irrelevant here, and knitr does not need fig=TRUE at all
(plots are automatically recorded).
The real problem is the [preview] option; remove it and you are all set.
Next time if you have problems with tikzDevice, you can take a look at
the LaTeX log to know what exactly is wrong, e.g. in this case you
will see
! LaTeX Error: Option clash for package preview.
The log file is at figure/fig1.log by default in your case.
Regards,
Yihui
--
Yihui Xie xieyi...@gmail.com
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On Sun, Dec 2, 2012 at 5:36 PM, Shige Song shiges...@gmail.com wrote:
Easiest way: copy and paste the code into Rstudio and hit compile pdf.
From the command line, I believe you can do knit2pdf example.Rnw.
Shige
On Sun, Dec 2, 2012 at 6:12 PM, Duncan Murdoch murdoch.dun...@gmail.com
wrote:
On 12-12-02 5:42 PM, Shige Song wrote:
I am having problem making ggplot2, tikzDevice, and knitr working
together.
I used a very simple example:
I don't use knitr so I can't really help, but you didn't tell us how you
passed this file to knitr, so maybe nobody can. However, if you were
using
Sweave, you would need to mention that the code chunk produces a figure
(using fig=TRUE in the = header).
Duncan Murdoch
---**example.Rnw---**--
\documentclass[preview]{**standalone}
\begin{document}
\begin{figure}
fig1,eval=TRUE,echo=FALSE,**dev='tikz'=
library(ggplot2)
qplot(displ, hwy, data = mpg, colour = factor(cyl))
@
\end{figure}
\end{document}
--**--**
-
I got ... ! == Fatal error occurred, no output PDF file produced!
label: fig1 (with options)
List of 3
$ eval: logi TRUE
$ echo: logi FALSE
$ dev : chr tikz
Error in process_file(text, output) :
Quitting from lines 6-8: (test_Rnw.Rnw) Error in
getMetricsFromLatex(**TeXMetrics) :
TeX was unable to calculate metrics for the following string
or character:
hwy
Common reasons for failure include:
* The string contains a character which is special to LaTeX unless
escaped properly, such as % or $.
* The string makes use of LaTeX commands provided by a package and
the tikzDevice was not told to load the package.
The contents of the LaTeX log of the aborted run have been printed
above,
it may contain additional details as to why the metric calculation
failed.
Calls: knit - process_file
Execution halted
Best,
Shige
[[alternative HTML version deleted]]
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] Problem with figures
All right. I did some more digging. It turns out that the real problem is
that the version of the standalone LaTeX package installed on my Debian
system is 1.1a. The easiest fix is to replace the three files
standalone.cfg, standalone.cls, and standalone.sty with the most
recent version from CTAN, which is 1.1b. Now I use
\documentclass[preview]{standalone} in my Rnw file to get the desired
results.
On Sun, Dec 2, 2012 at 11:10 PM, Yihui Xie x...@yihui.name wrote:
fig=TRUE is irrelevant here, and knitr does not need fig=TRUE at all
(plots are automatically recorded).
The real problem is the [preview] option; remove it and you are all set.
Next time if you have problems with tikzDevice, you can take a look at
the LaTeX log to know what exactly is wrong, e.g. in this case you
will see
! LaTeX Error: Option clash for package preview.
The log file is at figure/fig1.log by default in your case.
Regards,
Yihui
--
Yihui Xie xieyi...@gmail.com
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On Sun, Dec 2, 2012 at 5:36 PM, Shige Song shiges...@gmail.com wrote:
Easiest way: copy and paste the code into Rstudio and hit compile pdf.
From the command line, I believe you can do knit2pdf example.Rnw.
Shige
On Sun, Dec 2, 2012 at 6:12 PM, Duncan Murdoch murdoch.dun...@gmail.com
wrote:
On 12-12-02 5:42 PM, Shige Song wrote:
I am having problem making ggplot2, tikzDevice, and knitr working
together.
I used a very simple example:
I don't use knitr so I can't really help, but you didn't tell us how you
passed this file to knitr, so maybe nobody can. However, if you were
using
Sweave, you would need to mention that the code chunk produces a figure
(using fig=TRUE in the = header).
Duncan Murdoch
---**example.Rnw---**--
\documentclass[preview]{**standalone}
\begin{document}
\begin{figure}
fig1,eval=TRUE,echo=FALSE,**dev='tikz'=
library(ggplot2)
qplot(displ, hwy, data = mpg, colour = factor(cyl))
@
\end{figure}
\end{document}
--**--**
-
I got ... ! == Fatal error occurred, no output PDF file produced!
label: fig1 (with options)
List of 3
$ eval: logi TRUE
$ echo: logi FALSE
$ dev : chr tikz
Error in process_file(text, output) :
Quitting from lines 6-8: (test_Rnw.Rnw) Error in
getMetricsFromLatex(**TeXMetrics) :
TeX was unable to calculate metrics for the following string
or character:
hwy
Common reasons for failure include:
* The string contains a character which is special to LaTeX unless
escaped properly, such as % or $.
* The string makes use of LaTeX commands provided by a package and
the tikzDevice was not told to load the package.
The contents of the LaTeX log of the aborted run have been printed
above,
it may contain additional details as to why the metric calculation
failed.
Calls: knit - process_file
Execution halted
Best,
Shige
[[alternative HTML version deleted]]
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] Problem with figures
I'm using the latest version of TeXLive under Ubuntu
(http://packages.ubuntu.com/quantal/tex/texlive) so I did not realize
the version of standalone can be a problem. My version is also 1.1a,
but I do not have any problems if I remove the preview option from
your example. Sounds like there is a subtle difference somewhere
between your Debian TeXLive and my Ubuntu TeXLive...
Regards,
Yihui
--
Yihui Xie xieyi...@gmail.com
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On Mon, Dec 3, 2012 at 9:29 AM, Shige Song shiges...@gmail.com wrote:
All right. I did some more digging. It turns out that the real problem is
that the version of the standalone LaTeX package installed on my Debian
system is 1.1a. The easiest fix is to replace the three files
standalone.cfg, standalone.cls, and standalone.sty with the most
recent version from CTAN, which is 1.1b. Now I use
\documentclass[preview]{standalone} in my Rnw file to get the desired
results.
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] Problem with figures
On 12-12-02 5:42 PM, Shige Song wrote:
I am having problem making ggplot2, tikzDevice, and knitr working together.
I used a very simple example:
I don't use knitr so I can't really help, but you didn't tell us how you
passed this file to knitr, so maybe nobody can. However, if you were
using Sweave, you would need to mention that the code chunk produces a
figure (using fig=TRUE in the = header).
Duncan Murdoch
---example.Rnw-
\documentclass[preview]{standalone}
\begin{document}
\begin{figure}
fig1,eval=TRUE,echo=FALSE,dev='tikz'=
library(ggplot2)
qplot(displ, hwy, data = mpg, colour = factor(cyl))
@
\end{figure}
\end{document}
-
I got ... ! == Fatal error occurred, no output PDF file produced!
label: fig1 (with options)
List of 3
$ eval: logi TRUE
$ echo: logi FALSE
$ dev : chr tikz
Error in process_file(text, output) :
Quitting from lines 6-8: (test_Rnw.Rnw) Error in
getMetricsFromLatex(TeXMetrics) :
TeX was unable to calculate metrics for the following string
or character:
hwy
Common reasons for failure include:
* The string contains a character which is special to LaTeX unless
escaped properly, such as % or $.
* The string makes use of LaTeX commands provided by a package and
the tikzDevice was not told to load the package.
The contents of the LaTeX log of the aborted run have been printed above,
it may contain additional details as to why the metric calculation failed.
Calls: knit - process_file
Execution halted
Best,
Shige
[[alternative HTML version deleted]]
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] Problem with figures
Easiest way: copy and paste the code into Rstudio and hit compile pdf.
From the command line, I believe you can do knit2pdf example.Rnw.
Shige
On Sun, Dec 2, 2012 at 6:12 PM, Duncan Murdoch murdoch.dun...@gmail.comwrote:
On 12-12-02 5:42 PM, Shige Song wrote:
I am having problem making ggplot2, tikzDevice, and knitr working
together.
I used a very simple example:
I don't use knitr so I can't really help, but you didn't tell us how you
passed this file to knitr, so maybe nobody can. However, if you were using
Sweave, you would need to mention that the code chunk produces a figure
(using fig=TRUE in the = header).
Duncan Murdoch
---**example.Rnw---**--
\documentclass[preview]{**standalone}
\begin{document}
\begin{figure}
fig1,eval=TRUE,echo=FALSE,**dev='tikz'=
library(ggplot2)
qplot(displ, hwy, data = mpg, colour = factor(cyl))
@
\end{figure}
\end{document}
--**--**
-
I got ... ! == Fatal error occurred, no output PDF file produced!
label: fig1 (with options)
List of 3
$ eval: logi TRUE
$ echo: logi FALSE
$ dev : chr tikz
Error in process_file(text, output) :
Quitting from lines 6-8: (test_Rnw.Rnw) Error in
getMetricsFromLatex(**TeXMetrics) :
TeX was unable to calculate metrics for the following string
or character:
hwy
Common reasons for failure include:
* The string contains a character which is special to LaTeX unless
escaped properly, such as % or $.
* The string makes use of LaTeX commands provided by a package and
the tikzDevice was not told to load the package.
The contents of the LaTeX log of the aborted run have been printed above,
it may contain additional details as to why the metric calculation failed.
Calls: knit - process_file
Execution halted
Best,
Shige
[[alternative HTML version deleted]]
__**
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/**listinfo/r-helphttps://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/**
posting-guide.html http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
[[alternative HTML version deleted]]
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] Problem with figures
fig=TRUE is irrelevant here, and knitr does not need fig=TRUE at all
(plots are automatically recorded).
The real problem is the [preview] option; remove it and you are all set.
Next time if you have problems with tikzDevice, you can take a look at
the LaTeX log to know what exactly is wrong, e.g. in this case you
will see
! LaTeX Error: Option clash for package preview.
The log file is at figure/fig1.log by default in your case.
Regards,
Yihui
--
Yihui Xie xieyi...@gmail.com
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On Sun, Dec 2, 2012 at 5:36 PM, Shige Song shiges...@gmail.com wrote:
Easiest way: copy and paste the code into Rstudio and hit compile pdf.
From the command line, I believe you can do knit2pdf example.Rnw.
Shige
On Sun, Dec 2, 2012 at 6:12 PM, Duncan Murdoch
murdoch.dun...@gmail.comwrote:
On 12-12-02 5:42 PM, Shige Song wrote:
I am having problem making ggplot2, tikzDevice, and knitr working
together.
I used a very simple example:
I don't use knitr so I can't really help, but you didn't tell us how you
passed this file to knitr, so maybe nobody can. However, if you were using
Sweave, you would need to mention that the code chunk produces a figure
(using fig=TRUE in the = header).
Duncan Murdoch
---**example.Rnw---**--
\documentclass[preview]{**standalone}
\begin{document}
\begin{figure}
fig1,eval=TRUE,echo=FALSE,**dev='tikz'=
library(ggplot2)
qplot(displ, hwy, data = mpg, colour = factor(cyl))
@
\end{figure}
\end{document}
--**--**
-
I got ... ! == Fatal error occurred, no output PDF file produced!
label: fig1 (with options)
List of 3
$ eval: logi TRUE
$ echo: logi FALSE
$ dev : chr tikz
Error in process_file(text, output) :
Quitting from lines 6-8: (test_Rnw.Rnw) Error in
getMetricsFromLatex(**TeXMetrics) :
TeX was unable to calculate metrics for the following string
or character:
hwy
Common reasons for failure include:
* The string contains a character which is special to LaTeX unless
escaped properly, such as % or $.
* The string makes use of LaTeX commands provided by a package and
the tikzDevice was not told to load the package.
The contents of the LaTeX log of the aborted run have been printed above,
it may contain additional details as to why the metric calculation failed.
Calls: knit - process_file
Execution halted
Best,
Shige
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
