Re: [R] R GUI for Linux?

2005-05-31 Thread Gavin Simpson

White, Charles E WRAIR-Wash DC wrote:

John:

Thank you for your interest. After more investigation I see that my
problem is with linking tcltk to R. tcl 8.4.7-2 and tk 8.4.7-2 are
tuned to fc3 (Fedora Core 3) and part of the standard installation.
However, required file locations are different than what is expected
by R. I set the locations for tclConfig.sh and tkConfig.sh using
./configure but R tells me something to the effect that Tcl and Tk
major or minor versions disagree. Your help or the help of others on
the R-List would be appreciated. FYI, I am also including the
locations of important files and directories.

tclConfig.sh: /usr/lib tkConfig.sh:  /usr/lib tcl library:
/usr/lib/tcl8.4 (symbolically linked from /usr/share/tcl8.4) tk
library:   /usr/lib/tk8.4 (separate copy in /usr/share/tk8.4) tcl.h:
I can't find it with full drive search tk.h: I can't find it
with full drive search


You need to install the devel packages for tcl and tk to get those 
header files.


on FC3, the preferred updater is yum so in a terminal:

su -c yum install tcl-devel tk-devel

Should install the *.h files for you.

HTH

Gav

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Re: [R] R GUI for Linux?

2005-05-31 Thread Ernesto Jardim

Sander Oom wrote:

Hi Charles,

Warm felt sympathies for your struggles. I consider myself a happy GUI 
user and have also struggled with the 'command line' history and lack of 
out-of-the-box functionality associated with Linux. However, Linux does 
have many, many advantages over other OS's, so I will stick to it. That 
said, I am reluctantly suggesting it to others, as there are lots of 
other things one can do on a Saturday afternoon. ;-)


After many long afternoons, I have come to the conclusion that accepting 
what comes as standard is the best approach to using Linux if you do 
have better things to do. I tried ESS, but I found it impenetrable at my 
first try, so gave up.


I run SuSE linux and R without any problem. The RPM was downloaded from 
CRAN and installed without any errors. I run update.packages to 
download, install and refresh all contributed and other packages.


I also looked for an R GUI, but must admit I stopped way before you did. 
I ended up using my favorite editor (Kate, comes standard with KDE) and 
cut and paste code into an R console (available as standard in the Kate 
window). Gives a nice clean window for writing code and running R. Of 
course Kate has code highlighting facilities (as standard). I soon 
realized that the console has a limited buffer for commands, such that 
long code sequences are abruptly ended part way through. Thus I have a 
second console open from which I source whole R files. The setup gives a 
relatively comfortable code debugging environment!


I was amazed when I read the instruction for JGR on Linux. I thought the 
whole point of Java was to create platform independent software. I have 
given up on any instructions that tell me to run 'make'. Linux 
distributions are just to idiosyncratic for it to be worth the effort. 
I'll just wait until Novell packs JGR with the new version of SuSE 
Linux. Even if I have to pay something for the added bonus!


Will keep following the GUI developments with interest,

Sander.


White, Charles E WRAIR-Wash DC wrote:

I feel your pain. grin I am a new Linux user who has spent most of 
the weekend trying to get a functional R setup. When I installed 
Fedora Core 3 (FC3) on my home computer, I thought using R in a 
terminal would be a snap. I installed R using the rpm packages and 
tried to use it with the FC3 default terminal (GNOME Terminal 2.7.3). 
Before long, I found out the terminal was rudely discarding output 
beyond a set number of lines. I could increase the number of lines 
kept by the terminal but that didn't strike me as an acceptable 
solution. Cutting to my stress relieving intermediate solution, I am 
currently using xemacs with ESS as my R programming environment under 
FC3. Eventually, I will want to run JGR as my programming environment 
and Rcmdr as both a teaching tool and means to distribute code to some 
of my clients. On my way to xemacs, I also tried to install emacs and 
gnomeGUI. I will briefly document my experience with trying to install 
each of these packages below:


XEMACS with ESS: XEMACS is within the 'walled garden' of packages 
tuned specifically to run under FC3 and XEMACS provides a tuned 
installation for ESS. Since I had already compiled R from source with 
shared libraries enabled (the rmp does not enable shared libraries), I 
don't know if XEMACS will work with the rpm version of R. Note also 
that I installed this package using yum; 'Add or Remove Applications' 
lists xemacs but wouldn't allow me to install.


JGR: I have installed jdk1.5.0_03 and MOST of the the output from make 
looks like JGR is compiling correctly. JavaGD and rJava are not 
finding jini.h. I don't see an explicit statement of how to start JGR 
but I assume that is done by typing JGR (or maybe jgr) in a terminal 
window. Nothing happens. Two potential problems are: (a) I never 
should have downloaded JavaGD and rJava from CRAN (they won't 
uninstall, deleting the directories doesn't stop the problem, and I 
can't use yum to remove R to start over because yum doesn't recognise 
that R is installed.) or (b) I need to uninstall some of the stray 
versions of java littering my hard drive. I haven't removed the 
symbolic link between jre1.5.0_02 and firefox.


Rcmdr: There are all sorts of things in FC3 that seem to be tcl/tk 
related but Rcmdr doesn't seem to work with them. Since some are part 
of the base FC3 installation, I'm nervious about replacing them or 
installing competing software. Potentially conflicting software in FC3 
are listed below:


tcl.i386 8.4.7-2installed
tclx.i3868.3.5-4installed
db4-tcl.i386 4.2.52-6   base
postgresql-tcl.i386  7.4.8-1.FC3.1  
updates-released
ruby-tcltk.i386  1.8.2-1.FC3.1  
updates-released

tcl-devel.i386   8.4.7-2base

Re: [R] R GUI for Linux?

2005-05-31 Thread A.J. Rossini
If you really want something closer to an IDE, add ECB to that mix
(Emacs Code Browser).  ESS does some minimal connections to it, for
code browsing between functions, data.frame creations, and S4 class
constructions.



On 5/31/05, Jari Oksanen [EMAIL PROTECTED] wrote:
 On Tue, 2005-05-31 at 10:43 +0100, Ernesto Jardim wrote:
 
  ESS looks very good but why should I load more than 30MB on the memory
  to work on a text file ? and why do I need to lear all the tricks and
  features of emacs just to edit a text file ?
 
 With emacs tricks you perhaps refer to four-finger key combinations that
 even gave name to emacs: it's supposed to be an acronym for Esc-Meta-
 Alt-Ctrl-Shift (say the enemies). However, you don't need those tricks.
 The only ones you need are Alt-x R to start R in ESS, and Esc-p to go
 back in command history -- these at least are the only ones I use,
 although I know people who really like acrobatic key combinations (I
 don't). All the rest is in the menus -- even in ordinary GNU Emacs (and
 also in its MacOS X and Windows ports). Installing ESS may be more
 trouble with GNU Emacs, but if you use Debian based distributions (like
 Ubuntu), you can directly install a deb package for ess (I once found an
 rpm for ESS as well, but that's not official nor standard). I avoid
 XEmacs, but people say things are even easier there.
 
 I'd suggest you try Emacs + ESS + R. It is really good and likable.
 Emacs is much more user friendly than it used to be some decade ago.
 
 cheers, jari oksanen
 --
 Jari Oksanen [EMAIL PROTECTED]
 
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-- 
best,
-tony

Commit early,commit often, and commit in a repository from which we can easily
roll-back your mistakes (AJR, 4Jan05).

A.J. Rossini
[EMAIL PROTECTED]

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RE: [R] R GUI for Linux?

2005-05-31 Thread White, Charles E WRAIR-Wash DC
Thanks for the tip. I thought that 'Base' files were installed already
but I know better now. Unfortunately, I'm still not up and running yet.
Since I don't have access to the subject machine at the moment, I'll be
even more vague than usual.

I installed the development versions of tcltk and specified the
locations for the *.sh files, the *.h files, and both of the individual
directories in /usr/lib. Based on my reading of one of the *.sh files,
it looks like I can specify multiple directories for a configuration
variable by putting them in quotes and leaving a space in between like
'path1 path2'. My reward was that ./configure didn't complain about
searching for any tcltk files and I got the clear message that R
couldn't compile/link to tcltk. Hmph. grin

Next steps when I get home tonight:
(a) Replace library locations in /usr/lib with those in /usr/share
(b) Include all four library locations
(c) Wait until Fedora Core 4 comes out in a couple of weeks, wipe my
drive, and start all over again.

Any other suggestions? Thanks again.

Chuck
-Original Message-
From: Gavin Simpson [mailto:[EMAIL PROTECTED] 
Sent: Tuesday, May 31, 2005 3:30 AM
To: White, Charles E WRAIR-Wash DC
Cc: John Fox; [EMAIL PROTECTED]; r-help@stat.math.ethz.ch
Subject: Re: [R] R GUI for Linux?

White, Charles E WRAIR-Wash DC wrote:
 John:
 
 Thank you for your interest. After more investigation I see that my
 problem is with linking tcltk to R. tcl 8.4.7-2 and tk 8.4.7-2 are
 tuned to fc3 (Fedora Core 3) and part of the standard installation.
 However, required file locations are different than what is expected
 by R. I set the locations for tclConfig.sh and tkConfig.sh using
 ./configure but R tells me something to the effect that Tcl and Tk
 major or minor versions disagree. Your help or the help of others on
 the R-List would be appreciated. FYI, I am also including the
 locations of important files and directories.
 
 tclConfig.sh: /usr/lib tkConfig.sh:  /usr/lib tcl library:
 /usr/lib/tcl8.4 (symbolically linked from /usr/share/tcl8.4) tk
 library:   /usr/lib/tk8.4 (separate copy in /usr/share/tk8.4) tcl.h:
 I can't find it with full drive search tk.h: I can't find it
 with full drive search

You need to install the devel packages for tcl and tk to get those 
header files.

on FC3, the preferred updater is yum so in a terminal:

su -c yum install tcl-devel tk-devel

Should install the *.h files for you.

HTH

Gav

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Re: [R] R GUI for Linux?

2005-05-31 Thread Bo Peng
   ESS looks very good but why should I load more than 30MB on the memory
   to work on a text file ? and why do I need to lear all the tricks and
   features of emacs just to edit a text file ?

One of the advantages (and disadvantages) of linux applications like
emacs is that you can, if you know how to, customize it to your taste
so you do not have to 'learn all the tricks and features' of it. You
can use cua package if you are used to C-x,C-c,C-v and other windows
stuff. You can change keybindings of ESS if you do not like them.

The reason why I like ESS is that I can step through or run a piece of
R code easily. For my ESS installation, I have several ESS buttons on
the toolbar to start R, eval line and step, eval region and eval
function. I have also linked these functions to shortcuts F9,F10,F11
by defining
  (define-key ess-mode-map  (kbd f9)  (quote ess-eval-line-and-step))
  (define-key ess-mode-map  (kbd f10)  (quote ess-eval-region))
  (define-key ess-mode-map  (kbd f11) (quote ess-eval-buffer))
in .emacs.

I do not see any reason why an embedded R session would occupy more
RAM than a standalone R session, other than the time/RAM emacs uses to
color the output. This can be a problem if the output is extremely
long so I usually clean the R-cmd buffer once a while.

Bo

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Re: [R] R GUI for Linux?

2005-05-31 Thread Gavin Simpson

White, Charles E WRAIR-Wash DC wrote:

Thanks for the tip. I thought that 'Base' files were installed already
but I know better now. Unfortunately, I'm still not up and running yet.
Since I don't have access to the subject machine at the moment, I'll be
even more vague than usual.


Base refers to the repository in which the packages reside. Unless you 
did a Full/Complete installation of FC3 from the CD's/DVD then you will 
*not* have all of Base installed.



I installed the development versions of tcltk and specified the
locations for the *.sh files, the *.h files, and both of the individual
directories in /usr/lib. Based on my reading of one of the *.sh files,
it looks like I can specify multiple directories for a configuration
variable by putting them in quotes and leaving a space in between like
'path1 path2'. My reward was that ./configure didn't complain about
searching for any tcltk files and I got the clear message that R
couldn't compile/link to tcltk. Hmph. grin

Next steps when I get home tonight:
(a) Replace library locations in /usr/lib with those in /usr/share
(b) Include all four library locations
(c) Wait until Fedora Core 4 comes out in a couple of weeks, wipe my
drive, and start all over again.

Any other suggestions? Thanks again.

Chuck


How are you specifying the locations of the *.sh and *.h files?

I've done very little to my FC boxes and as long as tcl tk, tcl-devel 
and tk-devel packages are installed, ./configure picks up the locations 
just fine. You shouldn't have to do anything. Perhaps undo you what did 
after installing the tcl/tk and devel packages and try it again as this 
most definitely works for me (almost) out of the box.


If that doesn't work, wait till you get back to your 'subject' machine 
and post back exactly what messages you are receiving that indicate R 
couldn't compile/link to tcl/tk


G

--
%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%
Gavin Simpson [T] +44 (0)20 7679 5522
ENSIS Research Fellow [F] +44 (0)20 7679 7565
ENSIS Ltd.  ECRC [E] gavin.simpsonATNOSPAMucl.ac.uk
UCL Department of Geography   [W] http://www.ucl.ac.uk/~ucfagls/cv/
26 Bedford Way[W] http://www.ucl.ac.uk/~ucfagls/
London.  WC1H 0AP.
%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%

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RESOLVED: [R] R GUI for Linux?

2005-05-31 Thread White, Charles E WRAIR-Wash DC
1) As long as the developer version of tcltk is installed, I now have no 
problem compiling R with tcltk support on Fedora Core 3. After extracting the 
gunzipped directory, I switch to the new directory and execute the following 
two commands:
./configure enable-R-shlib
make

2) After compiling JGR as specified on their web site, the JGR program is 
initialized with the 'run' file. That's one of the first things said in the 
instructions but I forgot by the time I got things compiled.

Thanks for your help.

Chuck

-Original Message-
From: Gavin Simpson [mailto:[EMAIL PROTECTED]
Sent: Tue 5/31/2005 8:57 AM
To: White, Charles E WRAIR-Wash DC
Cc: r-help@stat.math.ethz.ch
Subject: Re: [R] R GUI for Linux?
 
White, Charles E WRAIR-Wash DC wrote:
 Thanks for the tip. I thought that 'Base' files were installed already
 but I know better now. Unfortunately, I'm still not up and running yet.
 Since I don't have access to the subject machine at the moment, I'll be
 even more vague than usual.

Base refers to the repository in which the packages reside. Unless you 
did a Full/Complete installation of FC3 from the CD's/DVD then you will 
*not* have all of Base installed.

 I installed the development versions of tcltk and specified the
 locations for the *.sh files, the *.h files, and both of the individual
 directories in /usr/lib. Based on my reading of one of the *.sh files,
 it looks like I can specify multiple directories for a configuration
 variable by putting them in quotes and leaving a space in between like
 'path1 path2'. My reward was that ./configure didn't complain about
 searching for any tcltk files and I got the clear message that R
 couldn't compile/link to tcltk. Hmph. grin
 
 Next steps when I get home tonight:
 (a) Replace library locations in /usr/lib with those in /usr/share
 (b) Include all four library locations
 (c) Wait until Fedora Core 4 comes out in a couple of weeks, wipe my
 drive, and start all over again.
 
 Any other suggestions? Thanks again.
 
 Chuck

How are you specifying the locations of the *.sh and *.h files?

I've done very little to my FC boxes and as long as tcl tk, tcl-devel 
and tk-devel packages are installed, ./configure picks up the locations 
just fine. You shouldn't have to do anything. Perhaps undo you what did 
after installing the tcl/tk and devel packages and try it again as this 
most definitely works for me (almost) out of the box.

If that doesn't work, wait till you get back to your 'subject' machine 
and post back exactly what messages you are receiving that indicate R 
couldn't compile/link to tcl/tk

G

-- 
%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%
Gavin Simpson [T] +44 (0)20 7679 5522
ENSIS Research Fellow [F] +44 (0)20 7679 7565
ENSIS Ltd.  ECRC [E] gavin.simpsonATNOSPAMucl.ac.uk
UCL Department of Geography   [W] http://www.ucl.ac.uk/~ucfagls/cv/
26 Bedford Way[W] http://www.ucl.ac.uk/~ucfagls/
London.  WC1H 0AP.
%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%

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[R] R GUI for Linux?

2005-05-30 Thread White, Charles E WRAIR-Wash DC
I feel your pain. grin I am a new Linux user who has spent most of the 
weekend trying to get a functional R setup. When I installed Fedora Core 3 
(FC3) on my home computer, I thought using R in a terminal would be a snap. I 
installed R using the rpm packages and tried to use it with the FC3 default 
terminal (GNOME Terminal 2.7.3). Before long, I found out the terminal was 
rudely discarding output beyond a set number of lines. I could increase the 
number of lines kept by the terminal but that didn't strike me as an acceptable 
solution. Cutting to my stress relieving intermediate solution, I am currently 
using xemacs with ESS as my R programming environment under FC3. Eventually, I 
will want to run JGR as my programming environment and Rcmdr as both a teaching 
tool and means to distribute code to some of my clients. On my way to xemacs, I 
also tried to install emacs and gnomeGUI. I will briefly document my experience 
with trying to install each of these packages below:

XEMACS with ESS: XEMACS is within the 'walled garden' of packages tuned 
specifically to run under FC3 and XEMACS provides a tuned installation for ESS. 
Since I had already compiled R from source with shared libraries enabled (the 
rmp does not enable shared libraries), I don't know if XEMACS will work with 
the rpm version of R. Note also that I installed this package using yum; 'Add 
or Remove Applications' lists xemacs but wouldn't allow me to install.

JGR: I have installed jdk1.5.0_03 and MOST of the the output from make looks 
like JGR is compiling correctly. JavaGD and rJava are not finding jini.h. I 
don't see an explicit statement of how to start JGR but I assume that is done 
by typing JGR (or maybe jgr) in a terminal window. Nothing happens. Two 
potential problems are: (a) I never should have downloaded JavaGD and rJava 
from CRAN (they won't uninstall, deleting the directories doesn't stop the 
problem, and I can't use yum to remove R to start over because yum doesn't 
recognise that R is installed.) or (b) I need to uninstall some of the stray 
versions of java littering my hard drive. I haven't removed the symbolic link 
between jre1.5.0_02 and firefox.

Rcmdr: There are all sorts of things in FC3 that seem to be tcl/tk related but 
Rcmdr doesn't seem to work with them. Since some are part of the base FC3 
installation, I'm nervious about replacing them or installing competing 
software. Potentially conflicting software in FC3 are listed below:

tcl.i386 8.4.7-2installed
tclx.i3868.3.5-4installed
db4-tcl.i386 4.2.52-6   base
postgresql-tcl.i386  7.4.8-1.FC3.1  updates-released
ruby-tcltk.i386  1.8.2-1.FC3.1  updates-released
tcl-devel.i386   8.4.7-2base
tcl-html.i3868.4.7-2base
tclx-devel.i386  8.3.5-4base
tclx-doc.i3868.3.5-4base

EMACS with ESS: A version of EMACS is tuned to FC3 but ESS has to be obtained 
elsewhere. Installing ESS requires editing the hidden .emacs file. I know how 
to see hidden files but this one does not appear to be where the ESS directions 
say to look.

gnomeGUI: Error message says that I don't have Gnome installed. It would be 
nice and GNU to have a working copy of gnome GUI.

I hope you have found my message to be entertaining. If anybody can stop me 
before I do something else stupid, I'd appreciate it. Thanks.

Chuck

Charles E. White, Senior Biostatistician, MS
Walter Reed Army Institute of Research
503 Robert Grant Ave., Room 1w102
Silver Spring, MD 20910-1557
Personal/Professional Site: http://users.starpower.net/cwhite571/professional/

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Re: [R] R GUI for Linux?

2005-05-30 Thread Sander Oom

Hi Charles,

Warm felt sympathies for your struggles. I consider myself a happy GUI 
user and have also struggled with the 'command line' history and lack of 
out-of-the-box functionality associated with Linux. However, Linux does 
have many, many advantages over other OS's, so I will stick to it. That 
said, I am reluctantly suggesting it to others, as there are lots of 
other things one can do on a Saturday afternoon. ;-)


After many long afternoons, I have come to the conclusion that accepting 
what comes as standard is the best approach to using Linux if you do 
have better things to do. I tried ESS, but I found it impenetrable at my 
first try, so gave up.


I run SuSE linux and R without any problem. The RPM was downloaded from 
CRAN and installed without any errors. I run update.packages to 
download, install and refresh all contributed and other packages.


I also looked for an R GUI, but must admit I stopped way before you did. 
I ended up using my favorite editor (Kate, comes standard with KDE) and 
cut and paste code into an R console (available as standard in the Kate 
window). Gives a nice clean window for writing code and running R. Of 
course Kate has code highlighting facilities (as standard). I soon 
realized that the console has a limited buffer for commands, such that 
long code sequences are abruptly ended part way through. Thus I have a 
second console open from which I source whole R files. The setup gives a 
relatively comfortable code debugging environment!


I was amazed when I read the instruction for JGR on Linux. I thought the 
whole point of Java was to create platform independent software. I have 
given up on any instructions that tell me to run 'make'. Linux 
distributions are just to idiosyncratic for it to be worth the effort. 
I'll just wait until Novell packs JGR with the new version of SuSE 
Linux. Even if I have to pay something for the added bonus!


Will keep following the GUI developments with interest,

Sander.


White, Charles E WRAIR-Wash DC wrote:

I feel your pain. grin I am a new Linux user who has spent most of the 
weekend trying to get a functional R setup. When I installed Fedora Core 3 (FC3) on 
my home computer, I thought using R in a terminal would be a snap. I installed R 
using the rpm packages and tried to use it with the FC3 default terminal (GNOME 
Terminal 2.7.3). Before long, I found out the terminal was rudely discarding output 
beyond a set number of lines. I could increase the number of lines kept by the 
terminal but that didn't strike me as an acceptable solution. Cutting to my stress 
relieving intermediate solution, I am currently using xemacs with ESS as my R 
programming environment under FC3. Eventually, I will want to run JGR as my 
programming environment and Rcmdr as both a teaching tool and means to distribute 
code to some of my clients. On my way to xemacs, I also tried to install emacs and 
gnomeGUI. I will briefly document my experience with trying to install each of these 
packages below:

XEMACS with ESS: XEMACS is within the 'walled garden' of packages tuned 
specifically to run under FC3 and XEMACS provides a tuned installation for ESS. 
Since I had already compiled R from source with shared libraries enabled (the 
rmp does not enable shared libraries), I don't know if XEMACS will work with 
the rpm version of R. Note also that I installed this package using yum; 'Add 
or Remove Applications' lists xemacs but wouldn't allow me to install.

JGR: I have installed jdk1.5.0_03 and MOST of the the output from make looks 
like JGR is compiling correctly. JavaGD and rJava are not finding jini.h. I 
don't see an explicit statement of how to start JGR but I assume that is done 
by typing JGR (or maybe jgr) in a terminal window. Nothing happens. Two 
potential problems are: (a) I never should have downloaded JavaGD and rJava 
from CRAN (they won't uninstall, deleting the directories doesn't stop the 
problem, and I can't use yum to remove R to start over because yum doesn't 
recognise that R is installed.) or (b) I need to uninstall some of the stray 
versions of java littering my hard drive. I haven't removed the symbolic link 
between jre1.5.0_02 and firefox.

Rcmdr: There are all sorts of things in FC3 that seem to be tcl/tk related but 
Rcmdr doesn't seem to work with them. Since some are part of the base FC3 
installation, I'm nervious about replacing them or installing competing 
software. Potentially conflicting software in FC3 are listed below:

tcl.i386 8.4.7-2installed
tclx.i3868.3.5-4installed
db4-tcl.i386 4.2.52-6   base
postgresql-tcl.i386  7.4.8-1.FC3.1  updates-released
ruby-tcltk.i386  1.8.2-1.FC3.1  updates-released
tcl-devel.i386   8.4.7-2base
tcl-html.i386

RE: [R] R GUI for Linux?

2005-05-30 Thread John Fox
Dear Charles,


 -Original Message-
 From: [EMAIL PROTECTED] 
 [mailto:[EMAIL PROTECTED] On Behalf Of White, 
 Charles E WRAIR-Wash DC
 Sent: Monday, May 30, 2005 10:52 AM
 To: r-help@stat.math.ethz.ch
 Cc: [EMAIL PROTECTED]
 Subject: [R] R GUI for Linux?
 

. . .

 
 Rcmdr: There are all sorts of things in FC3 that seem to be 
 tcl/tk related but Rcmdr doesn't seem to work with them. 
 Since some are part of the base FC3 installation, I'm 
 nervious about replacing them or installing competing 
 software. Potentially conflicting software in FC3 are listed below:
 
 tcl.i386 8.4.7-2  
   installed
 tclx.i3868.3.5-4  
   installed
 db4-tcl.i386 4.2.52-6   base
 postgresql-tcl.i386  7.4.8-1.FC3.1
   updates-released
 ruby-tcltk.i386  1.8.2-1.FC3.1
   updates-released
 tcl-devel.i386   8.4.7-2base
 tcl-html.i3868.4.7-2base
 tclx-devel.i386  8.3.5-4base
 tclx-doc.i3868.3.5-4base
 

. . .

I haven't tried the Rcmdr package with FC3, but I ran it under an older
version of Red Hat Linux some time ago, and the current version (Rcmdr
1.0-2) under Quantian.

Can you be more specific about the problems that you encountered? Are these
general to the tcltk package or specific to the Rcmdr?

I'm sorry that you're experiencing problems.

John

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Re: [R] R GUI for Linux?

2005-05-30 Thread Patrick Connolly
On Mon, 30-May-2005 at 08:29PM +0200, Sander Oom wrote:


| .. I have 
| given up on any instructions that tell me to run 'make'. Linux 
| distributions are just to[o] idiosyncratic for it to be worth the effort. 

That might be true of Linux distributions in general, but installing R
is *very* easy.  There are a couple of lines you can paste from the
README file to get the configure and make thing working.  Depending on
your machine, it might take some time to do all its stuff which is
extensive and thorough.

Installing ESS is only slightly different.  Simply extract the tar.gz
file, find the README file and adjust your .emacs file to let it know
where you've installed ESS.

Granted, it does take a bit to get used to the way Emacs does things,
but you need only about 1% of its capability and then it is extremely
easy to use.  Many questions asked on this list just don't arise.

best

-- 
Patrick Connolly
HortResearch
Mt Albert
Auckland
New Zealand 
Ph: +64-9 815 4200 x 7188
~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~
I have the world`s largest collection of seashells. I keep it on all
the beaches of the world ... Perhaps you`ve seen it.  ---Steven Wright 
~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~

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RE: [R] R GUI for Linux?

2005-05-30 Thread White, Charles E WRAIR-Wash DC
John:

Thank you for your interest. After more investigation I see that my problem is 
with linking tcltk to R. tcl 8.4.7-2 and tk 8.4.7-2 are tuned to fc3 (Fedora 
Core 3) and part of the standard installation. However, required file locations 
are different than what is expected by R. I set the locations for tclConfig.sh 
and tkConfig.sh using ./configure but R tells me something to the effect that 
Tcl and Tk major or minor versions disagree. Your help or the help of others on 
the R-List would be appreciated. FYI, I am also including the locations of 
important files and directories.

tclConfig.sh: /usr/lib
tkConfig.sh:  /usr/lib
tcl library:  /usr/lib/tcl8.4 (symbolically linked from /usr/share/tcl8.4)
tk library:   /usr/lib/tk8.4 (separate copy in /usr/share/tk8.4)
tcl.h:I can't find it with full drive search
tk.h: I can't find it with full drive search

Thanks for your time.

Chuck
-Original Message-
From: John Fox [mailto:[EMAIL PROTECTED]
Sent: Mon 5/30/2005 4:20 PM
To: White, Charles E WRAIR-Wash DC
Cc: [EMAIL PROTECTED]; r-help@stat.math.ethz.ch
Subject: RE: [R] R GUI for Linux?
 
Dear Charles,


 -Original Message-
 From: [EMAIL PROTECTED] 
 [mailto:[EMAIL PROTECTED] On Behalf Of White, 
 Charles E WRAIR-Wash DC
 Sent: Monday, May 30, 2005 10:52 AM
 To: r-help@stat.math.ethz.ch
 Cc: [EMAIL PROTECTED]
 Subject: [R] R GUI for Linux?
 

. . .

I haven't tried the Rcmdr package with FC3, but I ran it under an older
version of Red Hat Linux some time ago, and the current version (Rcmdr
1.0-2) under Quantian.

Can you be more specific about the problems that you encountered? Are these
general to the tcltk package or specific to the Rcmdr?

I'm sorry that you're experiencing problems.

John

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[R] R GUI for Linux?

2005-05-29 Thread Robert Citek


Hello all,

I noticed that both Windows and OS X version of R have a GUI  
(Rconsole).  Is there a GUI for Linux?  I'm running Debian on which  
the CLI for R works just fine.


Regards,
- Robert

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Re: [R] R GUI for Linux?

2005-05-29 Thread Sander Oom

HI Robert,

Of course Linux already has a console! Just type R in the Terminal 
console and R will start (assuming all is installed correctly). Graphics 
will be launched in separate windows.


If you want more then the Terminal console, try:

http://www.sciviews.org/_rgui/

Good luck,

Sander.

Robert Citek wrote:


Hello all,

I noticed that both Windows and OS X version of R have a GUI  
(Rconsole).  Is there a GUI for Linux?  I'm running Debian on which  the 
CLI for R works just fine.


Regards,
- Robert

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--

Dr Sander P. Oom
Animal, Plant and Environmental Sciences,
University of the Witwatersrand
Private Bag 3, Wits 2050, South Africa
Tel (work)  +27 (0)11 717 64 04
Tel (home)  +27 (0)18 297 44 51
Fax +27 (0)18 299 24 64
Email   [EMAIL PROTECTED]
Web www.oomvanlieshout.net/sander

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Re: [R] R GUI for Linux?

2005-05-29 Thread Dirk Eddelbuettel

On 29 May 2005 at 12:13, Robert Citek wrote:
| 
| Hello all,
| 
| I noticed that both Windows and OS X version of R have a GUI  
| (Rconsole).  Is there a GUI for Linux?  I'm running Debian on which  
| the CLI for R works just fine.


$ apt-get install r-gnome ## works up until R 2.0.1
$ R --gui=gnome 

That said, as of R 2.1.0, the Gnome UI is no longer shipped with the R
sources. Hence, I no longer provide it in the r-gnome package.  However, the
code is now provided in an add-one package 'gnomeGUI' on CRAN which you could
install directly.

Hope this helps, Dirk

-- 
Statistics: The (futile) attempt to offer certainty about uncertainty.
 -- Roger Koenker, 'Dictionary of Received Ideas of Statistics'

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Re: [R] R GUI for Linux?

2005-05-29 Thread Gabor Grothendieck
Check out the JGR link on the web page mentioned by Sander below.

On 5/29/05, Sander Oom [EMAIL PROTECTED] wrote:
 HI Robert,
 
 Of course Linux already has a console! Just type R in the Terminal
 console and R will start (assuming all is installed correctly). Graphics
 will be launched in separate windows.
 
 If you want more then the Terminal console, try:
 
 http://www.sciviews.org/_rgui/
 
 Good luck,
 
 Sander.
 
 Robert Citek wrote:
 
  Hello all,
 
  I noticed that both Windows and OS X version of R have a GUI
  (Rconsole).  Is there a GUI for Linux?  I'm running Debian on which  the
  CLI for R works just fine.
 
  Regards,
  - Robert
 
  __
  R-help@stat.math.ethz.ch mailing list
  https://stat.ethz.ch/mailman/listinfo/r-help
  PLEASE do read the posting guide!
  http://www.R-project.org/posting-guide.html
 
 
 
 --
 
 Dr Sander P. Oom
 Animal, Plant and Environmental Sciences,
 University of the Witwatersrand
 Private Bag 3, Wits 2050, South Africa
 Tel (work)  +27 (0)11 717 64 04
 Tel (home)  +27 (0)18 297 44 51
 Fax +27 (0)18 299 24 64
 Email   [EMAIL PROTECTED]
 Web www.oomvanlieshout.net/sander
 
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