date:20230417

Re: [R-pkg-devel] (no subject)

2023-04-17 Thread Socorro Dominguez

Thank you all,

I really appreciate how fast you have all helped me and I am very grateful
for it.

I did not have a space. I wonder why it is rendering like that. I removed
the line and wrote it again just in case a weird character had gotten in
the way. Now I have done as you have suggested.

When I did the R CMD I had no issues locally and I had no more notes or
elements being interpreted as fields.

Thank you,

Socorro

On Mon, Apr 17, 2023 at 9:07 PM Iris Simmons  wrote:

> You put a space between "https:" and "//", you should definitely remove
> that. Also, you need to indent your description. Right now, your
> DESCRIPTION is being interpreted in this manner:
>
> ```
> Package
>
>
>
>
>
>
>  "neotoma2"
>
>
>
>
>
>
>   Title
>
>
>
>
>
>"Working with the
> Neotoma Paleoecology Database"
>
>
>
>
>
>
>Date
>
>
>
>
>
>
>"2023-04-17"
>
>
>
>
>
>
> Version
>
>
>
>
>
>
> "1.0.0"
>
>
>
>
>
>
>   Authors@R
> "\nc(person(given = \"Dominguez Vidana\",\n family =
> \"Socorro\",\n role = c(\"aut\"),\n email = \"
> s.doming...@ht-data.com\",\n comment =
> structure(\"-0002-7926-4935\", .Names = \"ORCID\")),\n
>  person(given = \"Simon\",\n family = \"Goring\",\n
> role = c(\"aut\", \"cre\"),\n email = \"gor...@wisc.edu\",\n
> comment = structure(\"-0002-2700-4605\", .Names =
> \"ORCID\")))"
>
>
>
>
>
>
> URL
>
>
>
>
>
> "
> https://github.com/NeotomaDB/neotoma2;
>
>
>
>
>
>
>  BugReports
>
>
>
>
>
>  "
> https://github.com/NeotomaDB/neotoma2/issues;
>
>
>
>
>
>
> Description
>
>
>
>
>
>  "Access and manipulation of data using the
> Neotoma Paleoecology Database."
>
>
>
>
>
>
>  
>
>
>
>
>   "//
> api.neotomadb.org/api-docs/>."
>
>
>
>
>
>
> License
> ```
>
> You can see that it is interpreting " api.neotomadb.org/api-docs/>." as the contents of the field. I added 8
> spaces before "
> I hope this helps.
>
> On Mon, Apr 17, 2023 at 9:42 PM Socorro Dominguez 
> wrote:
>
>> Thank you for all the help.
>>
>> Here is the GitHub link:
>> https://github.com/NeotomaDB/neotoma2
>>
>> Best,
>>
>> Socorro
>>
>> On Mon, Apr 17, 2023 at 8:32 PM Merlise Clyde, Ph.D. 
>> wrote:
>>
>> > Make sure you have a period after the < > tag if that is the end of the
>> > paragraph/sentences - its is not clear it is there from the snippet that
>> > you sent.
>> > (let us know if the package is on github as then we can see the entire
>> > file)
>> >
>> > best,
>> > Merlise
>> > --
>> > *From:* R-package-devel  on
>> behalf
>> > of Socorro Dominguez 
>> > *Sent:* Monday, April 17, 2023 8:41 PM
>> > *To:* Sarah Goslee 
>> > *Cc:* r-package-devel@r-project.org 
>> > *Subject:* Re: [R-pkg-devel] (no subject)
>> >
>> > Thank you!
>> >
>> > So, based on this link:
>> >
>> >
>> https://urldefense.com/v3/__https://r-pkgs.org/description.html*:*:text=to*20be*20indented*3A-,Description,-*3A*20The*20description__;I34lJSUlJSU!!OToaGQ!rL12FfD_Ox2OGl4JbHsG06nsukCSrpt3piRZQ1B5cllO12AOU7ZP2OcwA5dorRJWaIda0dk74FnqQ0xeXNINIw$
>> > <
>> >
>> https://urldefense.com/v3/__https://r-pkgs.org/description.html*:*:text=to*20be*20indented*3A-,Description,-*3A*20The*20descriptio__;I34lJSUlJSU!!OToaGQ!rL12FfD_Ox2OGl4JbHsG06nsukCSrpt3piRZQ1B5cllO12AOU7ZP2OcwA5dorRJWaIda0dk74FnqQ0wC5cqebw$
>> > >
>> > I thought I had to add indentations...
>> >
>> > So, I originally sent:
>> > ```
>> > Description: Access and manipulate data from the Neotoma Paleoecology
>> > Database. <
>> >
>> https://urldefense.com/v3/__https://api.neotomadb.org/api-docs/__;!!OToaGQ!rL12FfD_Ox2OGl4JbHsG06nsukCSrpt3piRZQ1B5cllO12AOU7ZP2OcwA5dorRJWaIda0dk74FnqQ0zYR76mxw$
>> > >
>> > ```
>> >
>> > I was requested to add  referencing the "Neotoma
>> Paleoecology
>> > Database".
>> >
>> > With the Description above, I do not get any local errors when running
>> the
>> > R CMD but can rejects it and gives me this error:
>> >
>> >
>> > If I do this:
>> > ```
>> > Description: Access and manipulate data from the Neotoma Paleoecology
>> > Database.
>> > <
>> >
>> https://urldefense.com/v3/__https://api.neotomadb.org/api-docs/__;!!OToaGQ!rL12FfD_Ox2OGl4JbHsG06nsukCSrpt3piRZQ1B5cllO12AOU7ZP2OcwA5dorRJWaIda0dk74FnqQ0zYR76mxw$
>> > >
>> > ```
>> >
>> > and run the R CMD, I get the following message:
>> > ```
>> > Unknown, possibly mis-spelled, fields in DESCRIPTION:
>> >   ‘> > ```
>> > (however, it is not an error)
>> >
>> >
>> > I see that I have to write complete sentences, so I have done the
>> >

Re: [R-pkg-devel] (no subject)

2023-04-17 Thread Socorro Dominguez

Thank you for all the help.

Here is the GitHub link:
https://github.com/NeotomaDB/neotoma2

Best,

Socorro

On Mon, Apr 17, 2023 at 8:32 PM Merlise Clyde, Ph.D.  wrote:

> Make sure you have a period after the < > tag if that is the end of the
> paragraph/sentences - its is not clear it is there from the snippet that
> you sent.
> (let us know if the package is on github as then we can see the entire
> file)
>
> best,
> Merlise
> --
> *From:* R-package-devel  on behalf
> of Socorro Dominguez 
> *Sent:* Monday, April 17, 2023 8:41 PM
> *To:* Sarah Goslee 
> *Cc:* r-package-devel@r-project.org 
> *Subject:* Re: [R-pkg-devel] (no subject)
>
> Thank you!
>
> So, based on this link:
>
> https://urldefense.com/v3/__https://r-pkgs.org/description.html*:*:text=to*20be*20indented*3A-,Description,-*3A*20The*20description__;I34lJSUlJSU!!OToaGQ!rL12FfD_Ox2OGl4JbHsG06nsukCSrpt3piRZQ1B5cllO12AOU7ZP2OcwA5dorRJWaIda0dk74FnqQ0xeXNINIw$
> <
> https://urldefense.com/v3/__https://r-pkgs.org/description.html*:*:text=to*20be*20indented*3A-,Description,-*3A*20The*20descriptio__;I34lJSUlJSU!!OToaGQ!rL12FfD_Ox2OGl4JbHsG06nsukCSrpt3piRZQ1B5cllO12AOU7ZP2OcwA5dorRJWaIda0dk74FnqQ0wC5cqebw$
> >
> I thought I had to add indentations...
>
> So, I originally sent:
> ```
> Description: Access and manipulate data from the Neotoma Paleoecology
> Database. <
> https://urldefense.com/v3/__https://api.neotomadb.org/api-docs/__;!!OToaGQ!rL12FfD_Ox2OGl4JbHsG06nsukCSrpt3piRZQ1B5cllO12AOU7ZP2OcwA5dorRJWaIda0dk74FnqQ0zYR76mxw$
> >
> ```
>
> I was requested to add  referencing the "Neotoma Paleoecology
> Database".
>
> With the Description above, I do not get any local errors when running the
> R CMD but can rejects it and gives me this error:
>
>
> If I do this:
> ```
> Description: Access and manipulate data from the Neotoma Paleoecology
> Database.
> <
> https://urldefense.com/v3/__https://api.neotomadb.org/api-docs/__;!!OToaGQ!rL12FfD_Ox2OGl4JbHsG06nsukCSrpt3piRZQ1B5cllO12AOU7ZP2OcwA5dorRJWaIda0dk74FnqQ0zYR76mxw$
> >
> ```
>
> and run the R CMD, I get the following message:
> ```
> Unknown, possibly mis-spelled, fields in DESCRIPTION:
>   ‘ ```
> (however, it is not an error)
>
>
> I see that I have to write complete sentences, so I have done the
> following:
> ```
> Description: Access and manipulation of data using the Neotoma Paleoecology
> Database.
> <
> https://urldefense.com/v3/__https://api.neotomadb.org/api-docs/__;!!OToaGQ!rL12FfD_Ox2OGl4JbHsG06nsukCSrpt3piRZQ1B5cllO12AOU7ZP2OcwA5dorRJWaIda0dk74FnqQ0zYR76mxw$
> >
> ```
>
> I would llike to know if this is correct prior to submitting again. Or know
> how should I place that  tag
>
> Thank you for all your help.
>
> Socorro
>
> On Mon, Apr 17, 2023 at 7:19 PM Sarah Goslee 
> wrote:
>
> > Hi,
> >
> > The Writing R Packages manual is the main documentation, specifically:
> >
> https://urldefense.com/v3/__https://cran.r-project.org/doc/manuals/R-exts.html*The-DESCRIPTION-file__;Iw!!OToaGQ!rL12FfD_Ox2OGl4JbHsG06nsukCSrpt3piRZQ1B5cllO12AOU7ZP2OcwA5dorRJWaIda0dk74FnqQ0ypxASA8Q$
> >
> > As for indentation, don't. Just use a newline.
> >
> > I don't know of any templates, but the source code for many/most
> > packages is on RForge and/or github, so you can look at as many
> > DESCRIPTION files as you'd like to find the solutions you need.
> >
> > If that doesn't help, then please share actual examples of what isn't
> > working in your file.
> >
> > Sarah
> >
> > On Mon, Apr 17, 2023 at 8:15 PM Socorro Dominguez
> >  wrote:
> > >
> > > Hello!
> > >
> > > I need some help.
> > >
> > > Could you explain how to write the *Description* field in the
> > *Description*
> > > file when we need to add links? I don't find any rules on how to write
> it
> > > when it includes links such as 
> > >
> > > Also, whenever I try to do a new line in the *Description* field with
> the
> > > four spaces for indentation, I get an error from the R CMD
> > >
> > > If you could provide me with some sort of template example, I would be
> > > extremely grateful.
> > >
> > > Best,
> > >
> > > Socorro
> > >
> > > --
> > > Best regards,
> > >
> > > Socorro E. Dominguez-Vidaña
> > > s.doming...@ht-data.com
> > >
> > > [[alternative HTML version deleted]]
> > >
> > > __
> > > R-package-devel@r-project.org mailing list
> > >
> https://urldefense.com/v3/__https://stat.ethz.ch/mailman/listinfo/r-package-devel__;!!OToaGQ!rL12FfD_Ox2OGl4JbHsG06nsukCSrpt3piRZQ1B5cllO12AOU7ZP2OcwA5dorRJWaIda0dk74FnqQ0x27JHaIA$
> >
> >
> >
> > --
> > Sarah Goslee (she/her)
> >
> https://urldefense.com/v3/__http://www.numberwright.com__;!!OToaGQ!rL12FfD_Ox2OGl4JbHsG06nsukCSrpt3piRZQ1B5cllO12AOU7ZP2OcwA5dorRJWaIda0dk74FnqQ0x3pHxbwQ$
> >
>
>
> --
> Best regards,
>
> Socorro E. Dominguez-Vidaña
> s.doming...@ht-data.com
>
> [[alternative HTML version deleted]]
>
> __
> R-package-devel@r-project.org mailing list
>
>

Re: [R-pkg-devel] (no subject)

2023-04-17 Thread Merlise Clyde, Ph.D.

Make sure you have a period after the < > tag if that is the end of the 
paragraph/sentences - its is not clear it is there from the snippet that you 
sent.
(let us know if the package is on github as then we can see the entire file)

best,
Merlise

From: R-package-devel  on behalf of 
Socorro Dominguez 
Sent: Monday, April 17, 2023 8:41 PM
To: Sarah Goslee 
Cc: r-package-devel@r-project.org 
Subject: Re: [R-pkg-devel] (no subject)

Thank you!

So, based on this link:
https://urldefense.com/v3/__https://r-pkgs.org/description.html*:*:text=to*20be*20indented*3A-,Description,-*3A*20The*20description__;I34lJSUlJSU!!OToaGQ!rL12FfD_Ox2OGl4JbHsG06nsukCSrpt3piRZQ1B5cllO12AOU7ZP2OcwA5dorRJWaIda0dk74FnqQ0xeXNINIw$

I thought I had to add indentations...

So, I originally sent:
```
Description: Access and manipulate data from the Neotoma Paleoecology
Database. 

```

I was requested to add  referencing the "Neotoma Paleoecology
Database".

With the Description above, I do not get any local errors when running the
R CMD but can rejects it and gives me this error:


If I do this:
```
Description: Access and manipulate data from the Neotoma Paleoecology
Database.

```

and run the R CMD, I get the following message:
```
Unknown, possibly mis-spelled, fields in DESCRIPTION:
  ‘https://urldefense.com/v3/__https://api.neotomadb.org/api-docs/__;!!OToaGQ!rL12FfD_Ox2OGl4JbHsG06nsukCSrpt3piRZQ1B5cllO12AOU7ZP2OcwA5dorRJWaIda0dk74FnqQ0zYR76mxw$
 >
```

I would llike to know if this is correct prior to submitting again. Or know
how should I place that  tag

Thank you for all your help.

Socorro

On Mon, Apr 17, 2023 at 7:19 PM Sarah Goslee  wrote:

> Hi,
>
> The Writing R Packages manual is the main documentation, specifically:
> https://urldefense.com/v3/__https://cran.r-project.org/doc/manuals/R-exts.html*The-DESCRIPTION-file__;Iw!!OToaGQ!rL12FfD_Ox2OGl4JbHsG06nsukCSrpt3piRZQ1B5cllO12AOU7ZP2OcwA5dorRJWaIda0dk74FnqQ0ypxASA8Q$
>
> As for indentation, don't. Just use a newline.
>
> I don't know of any templates, but the source code for many/most
> packages is on RForge and/or github, so you can look at as many
> DESCRIPTION files as you'd like to find the solutions you need.
>
> If that doesn't help, then please share actual examples of what isn't
> working in your file.
>
> Sarah
>
> On Mon, Apr 17, 2023 at 8:15 PM Socorro Dominguez
>  wrote:
> >
> > Hello!
> >
> > I need some help.
> >
> > Could you explain how to write the *Description* field in the
> *Description*
> > file when we need to add links? I don't find any rules on how to write it
> > when it includes links such as 
> >
> > Also, whenever I try to do a new line in the *Description* field with the
> > four spaces for indentation, I get an error from the R CMD
> >
> > If you could provide me with some sort of template example, I would be
> > extremely grateful.
> >
> > Best,
> >
> > Socorro
> >
> > --
> > Best regards,
> >
> > Socorro E. Dominguez-Vidaña
> > s.doming...@ht-data.com
> >
> > [[alternative HTML version deleted]]
> >
> > __
> > R-package-devel@r-project.org mailing list
> > https://urldefense.com/v3/__https://stat.ethz.ch/mailman/listinfo/r-package-devel__;!!OToaGQ!rL12FfD_Ox2OGl4JbHsG06nsukCSrpt3piRZQ1B5cllO12AOU7ZP2OcwA5dorRJWaIda0dk74FnqQ0x27JHaIA$
>
>
>
> --
> Sarah Goslee (she/her)
> https://urldefense.com/v3/__http://www.numberwright.com__;!!OToaGQ!rL12FfD_Ox2OGl4JbHsG06nsukCSrpt3piRZQ1B5cllO12AOU7ZP2OcwA5dorRJWaIda0dk74FnqQ0x3pHxbwQ$
>


--
Best regards,

Socorro E. Dominguez-Vidaña
s.doming...@ht-data.com

[[alternative HTML version deleted]]

__
R-package-devel@r-project.org mailing list
https://urldefense.com/v3/__https://stat.ethz.ch/mailman/listinfo/r-package-devel__;!!OToaGQ!rL12FfD_Ox2OGl4JbHsG06nsukCSrpt3piRZQ1B5cllO12AOU7ZP2OcwA5dorRJWaIda0dk74FnqQ0x27JHaIA$

[[alternative HTML version deleted]]

__
R-package-devel@r-project.org mailing list
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Re: [R-pkg-devel] (no subject)

2023-04-17 Thread Socorro Dominguez

Thank you!

So, based on this link:
https://r-pkgs.org/description.html#:~:text=to%20be%20indented%3A-,Description,-%3A%20The%20description

I thought I had to add indentations...

So, I originally sent:
```
Description: Access and manipulate data from the Neotoma Paleoecology
Database. 
```

I was requested to add  referencing the "Neotoma Paleoecology
Database".

With the Description above, I do not get any local errors when running the
R CMD but can rejects it and gives me this error:


If I do this:
```
Description: Access and manipulate data from the Neotoma Paleoecology
Database.

```

and run the R CMD, I get the following message:
```
Unknown, possibly mis-spelled, fields in DESCRIPTION:
  ‘https://api.neotomadb.org/api-docs/>
```

I would llike to know if this is correct prior to submitting again. Or know
how should I place that  tag

Thank you for all your help.

Socorro

On Mon, Apr 17, 2023 at 7:19 PM Sarah Goslee  wrote:

> Hi,
>
> The Writing R Packages manual is the main documentation, specifically:
> https://cran.r-project.org/doc/manuals/R-exts.html#The-DESCRIPTION-file
>
> As for indentation, don't. Just use a newline.
>
> I don't know of any templates, but the source code for many/most
> packages is on RForge and/or github, so you can look at as many
> DESCRIPTION files as you'd like to find the solutions you need.
>
> If that doesn't help, then please share actual examples of what isn't
> working in your file.
>
> Sarah
>
> On Mon, Apr 17, 2023 at 8:15 PM Socorro Dominguez
>  wrote:
> >
> > Hello!
> >
> > I need some help.
> >
> > Could you explain how to write the *Description* field in the
> *Description*
> > file when we need to add links? I don't find any rules on how to write it
> > when it includes links such as 
> >
> > Also, whenever I try to do a new line in the *Description* field with the
> > four spaces for indentation, I get an error from the R CMD
> >
> > If you could provide me with some sort of template example, I would be
> > extremely grateful.
> >
> > Best,
> >
> > Socorro
> >
> > --
> > Best regards,
> >
> > Socorro E. Dominguez-Vidaña
> > s.doming...@ht-data.com
> >
> > [[alternative HTML version deleted]]
> >
> > __
> > R-package-devel@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-package-devel
>
>
>
> --
> Sarah Goslee (she/her)
> http://www.numberwright.com
>


-- 
Best regards,

Socorro E. Dominguez-Vidaña
s.doming...@ht-data.com

[[alternative HTML version deleted]]

__
R-package-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-package-devel

Re: [R-pkg-devel] (no subject)

2023-04-17 Thread Sarah Goslee

Hi,

The Writing R Packages manual is the main documentation, specifically:
https://cran.r-project.org/doc/manuals/R-exts.html#The-DESCRIPTION-file

As for indentation, don't. Just use a newline.

I don't know of any templates, but the source code for many/most
packages is on RForge and/or github, so you can look at as many
DESCRIPTION files as you'd like to find the solutions you need.

If that doesn't help, then please share actual examples of what isn't
working in your file.

Sarah

On Mon, Apr 17, 2023 at 8:15 PM Socorro Dominguez
 wrote:
>
> Hello!
>
> I need some help.
>
> Could you explain how to write the *Description* field in the *Description*
> file when we need to add links? I don't find any rules on how to write it
> when it includes links such as 
>
> Also, whenever I try to do a new line in the *Description* field with the
> four spaces for indentation, I get an error from the R CMD
>
> If you could provide me with some sort of template example, I would be
> extremely grateful.
>
> Best,
>
> Socorro
>
> --
> Best regards,
>
> Socorro E. Dominguez-Vidaña
> s.doming...@ht-data.com
>
> [[alternative HTML version deleted]]
>
> __
> R-package-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-package-devel



-- 
Sarah Goslee (she/her)
http://www.numberwright.com

__
R-package-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-package-devel

[R-pkg-devel] (no subject)

2023-04-17 Thread Socorro Dominguez

Hello!

I need some help.

Could you explain how to write the *Description* field in the *Description*
file when we need to add links? I don't find any rules on how to write it
when it includes links such as 

Also, whenever I try to do a new line in the *Description* field with the
four spaces for indentation, I get an error from the R CMD

If you could provide me with some sort of template example, I would be
extremely grateful.

Best,

Socorro

-- 
Best regards,

Socorro E. Dominguez-Vidaña
s.doming...@ht-data.com

[[alternative HTML version deleted]]

__
R-package-devel@r-project.org mailing list
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Re: [R-pkg-devel] (no subject)

Re: [R-pkg-devel] (no subject)

Re: [R-pkg-devel] (no subject)

Re: [R-pkg-devel] (no subject)

Re: [R-pkg-devel] (no subject)

[R-pkg-devel] (no subject)

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