Re: [R-pkg-devel] issues with SOfun - package upload

2017-11-10 Thread LUCA BELMONTE 
Hi Dason,

I wrote it from scratch.

Thank you for the suggestion though,

Luca

2017-11-09 17:17 GMT+01:00 Dason Kurkiewicz :

> Did you write it from scratch or modify the function from the package
> you were referencing?  There may be some licensing issues you need to
> consider either way.
>
> -Dason
>
> On Thu, Nov 9, 2017 at 3:53 AM, LUCA BELMONTE 
> wrote:
> > Dear Brian,
> > Dear Uwe,
> >
> > Thank you for your replies.
> >
> > I wrote a function that does the same stuff that the suggested package
> > does.
> > Now there are no reference to suggested packages.
> >
> > Best,
> > Luca
> >
> > 2017-11-08 18:03 GMT+01:00 Uwe Ligges :
> >
> >> And even this cannot work for strong dependencies, as sztrong
> deendencies
> >> must be available from mainstream repositoreis.
> >>
> >> Best,
> >> Uwe Ligges
> >>
> >>
> >>
> >>
> >>
> >> On 08.11.2017 17:59, Brian G. Peterson wrote:
> >>
> >>> I think you should be using:
> >>>
> >>> Additional_repositories: https://github.com/mrdwab/SOfun
> >>>
> >>> since that is the actual repository.
> >>>
> >>> Regards,
> >>>
> >>> Brian
> >>>
> >>> On Wed, 2017-11-08 at 17:01 +0100, LUCA BELMONTE wrote:
> >>>
>  Good evening,
> 
>  I am trying to upload my package, called PdPDB 2.0.
>  When building and checking the package with R-studio with --as-cran
>  option
>  selected, everything looks ok but, once I tried to upload the package
>  to
>  CRAN I had the following reply:
> 
>  *"Strong dependencies not in mainstream repositories:*
>  *  SOfun*
>  ** checking package namespace information ... OK*
>  ** checking package dependencies ... ERROR*
>  *Package required but not available: 'SOfun'"*
> 
>  I understand the issue it with SOfun that is a package I downloaded
>  and
>  installed from this github url: https://github.com/mrdwab/SOfun
> 
>  I came back to CARN policies and I have read:
> 
> 
>  *"Packages on which a CRAN package depends should be available from a
>  mainstream repository: if any mentioned in ‘Suggests’ or ‘Enhances’
>  fields
>  are not from such a repository, where to obtain them at a repository
>  should
>  be specified in an ‘Additional_repositories’ field of the DESCRIPTION
>  file
>  (as a comma-separated list of repository URLs) or for other means of
>  access, described in the ‘Description’ field."*
> 
>  So, I updated the DESCRIPTION file as follows:
>  Additional_repositories: http://news.mrdwab.com/install_github.R
> 
>  Before to proceed to submission, I would like to know if this is the
>  right
>  way to proceed or I misinterpreted the submission procedure.
> 
>  Thank you for reading this email,
>  Best,
> 
> 
> >>> __
> >>> R-package-devel@r-project.org mailing list
> >>> https://stat.ethz.ch/mailman/listinfo/r-package-devel
> >>>
> >>>
> >
> >
> > --
> > Luca Belmonte, PhD
> >
> > Dept. Life Sciences,
> > University of Modena and Reggio Emilia
> >
> > Mobile: +39 328 45 81 762
> >
> > [[alternative HTML version deleted]]
> >
> > __
> > R-package-devel@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-package-devel
>



-- 
Luca Belmonte, PhD

Dept. Life Sciences,
University of Modena and Reggio Emilia

Mobile: +39 328 45 81 762

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Re: [R-pkg-devel] issues with SOfun - package upload

2017-11-09 Thread Dason Kurkiewicz 
Did you write it from scratch or modify the function from the package
you were referencing?  There may be some licensing issues you need to
consider either way.

-Dason

On Thu, Nov 9, 2017 at 3:53 AM, LUCA BELMONTE  wrote:
> Dear Brian,
> Dear Uwe,
>
> Thank you for your replies.
>
> I wrote a function that does the same stuff that the suggested package
> does.
> Now there are no reference to suggested packages.
>
> Best,
> Luca
>
> 2017-11-08 18:03 GMT+01:00 Uwe Ligges :
>
>> And even this cannot work for strong dependencies, as sztrong deendencies
>> must be available from mainstream repositoreis.
>>
>> Best,
>> Uwe Ligges
>>
>>
>>
>>
>>
>> On 08.11.2017 17:59, Brian G. Peterson wrote:
>>
>>> I think you should be using:
>>>
>>> Additional_repositories: https://github.com/mrdwab/SOfun
>>>
>>> since that is the actual repository.
>>>
>>> Regards,
>>>
>>> Brian
>>>
>>> On Wed, 2017-11-08 at 17:01 +0100, LUCA BELMONTE wrote:
>>>
 Good evening,

 I am trying to upload my package, called PdPDB 2.0.
 When building and checking the package with R-studio with --as-cran
 option
 selected, everything looks ok but, once I tried to upload the package
 to
 CRAN I had the following reply:

 *"Strong dependencies not in mainstream repositories:*
 *  SOfun*
 ** checking package namespace information ... OK*
 ** checking package dependencies ... ERROR*
 *Package required but not available: 'SOfun'"*

 I understand the issue it with SOfun that is a package I downloaded
 and
 installed from this github url: https://github.com/mrdwab/SOfun

 I came back to CARN policies and I have read:


 *"Packages on which a CRAN package depends should be available from a
 mainstream repository: if any mentioned in ‘Suggests’ or ‘Enhances’
 fields
 are not from such a repository, where to obtain them at a repository
 should
 be specified in an ‘Additional_repositories’ field of the DESCRIPTION
 file
 (as a comma-separated list of repository URLs) or for other means of
 access, described in the ‘Description’ field."*

 So, I updated the DESCRIPTION file as follows:
 Additional_repositories: http://news.mrdwab.com/install_github.R

 Before to proceed to submission, I would like to know if this is the
 right
 way to proceed or I misinterpreted the submission procedure.

 Thank you for reading this email,
 Best,


>>> __
>>> R-package-devel@r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/r-package-devel
>>>
>>>
>
>
> --
> Luca Belmonte, PhD
>
> Dept. Life Sciences,
> University of Modena and Reggio Emilia
>
> Mobile: +39 328 45 81 762
>
> [[alternative HTML version deleted]]
>
> __
> R-package-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-package-devel

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Re: [R-pkg-devel] issues with SOfun - package upload

2017-11-08 Thread Uwe Ligges 
And even this cannot work for strong dependencies, as sztrong 
deendencies must be available from mainstream repositoreis.


Best,
Uwe Ligges




On 08.11.2017 17:59, Brian G. Peterson wrote:

I think you should be using:

Additional_repositories: https://github.com/mrdwab/SOfun

since that is the actual repository.

Regards,

Brian

On Wed, 2017-11-08 at 17:01 +0100, LUCA BELMONTE wrote:

Good evening,

I am trying to upload my package, called PdPDB 2.0.
When building and checking the package with R-studio with --as-cran
option
selected, everything looks ok but, once I tried to upload the package
to
CRAN I had the following reply:

*"Strong dependencies not in mainstream repositories:*
*  SOfun*
** checking package namespace information ... OK*
** checking package dependencies ... ERROR*
*Package required but not available: 'SOfun'"*

I understand the issue it with SOfun that is a package I downloaded
and
installed from this github url: https://github.com/mrdwab/SOfun

I came back to CARN policies and I have read:


*"Packages on which a CRAN package depends should be available from a
mainstream repository: if any mentioned in ‘Suggests’ or ‘Enhances’
fields
are not from such a repository, where to obtain them at a repository
should
be specified in an ‘Additional_repositories’ field of the DESCRIPTION
file
(as a comma-separated list of repository URLs) or for other means of
access, described in the ‘Description’ field."*

So, I updated the DESCRIPTION file as follows:
Additional_repositories: http://news.mrdwab.com/install_github.R

Before to proceed to submission, I would like to know if this is the
right
way to proceed or I misinterpreted the submission procedure.

Thank you for reading this email,
Best,



__
R-package-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-package-devel



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Re: [R-pkg-devel] issues with SOfun - package upload

2017-11-08 Thread Brian G. Peterson 
I think you should be using:

Additional_repositories: https://github.com/mrdwab/SOfun

since that is the actual repository.

Regards,

Brian

On Wed, 2017-11-08 at 17:01 +0100, LUCA BELMONTE wrote:
> Good evening,
> 
> I am trying to upload my package, called PdPDB 2.0.
> When building and checking the package with R-studio with --as-cran
> option
> selected, everything looks ok but, once I tried to upload the package
> to
> CRAN I had the following reply:
> 
> *"Strong dependencies not in mainstream repositories:*
> *  SOfun*
> ** checking package namespace information ... OK*
> ** checking package dependencies ... ERROR*
> *Package required but not available: 'SOfun'"*
> 
> I understand the issue it with SOfun that is a package I downloaded
> and
> installed from this github url: https://github.com/mrdwab/SOfun
> 
> I came back to CARN policies and I have read:
> 
> 
> *"Packages on which a CRAN package depends should be available from a
> mainstream repository: if any mentioned in ‘Suggests’ or ‘Enhances’
> fields
> are not from such a repository, where to obtain them at a repository
> should
> be specified in an ‘Additional_repositories’ field of the DESCRIPTION
> file
> (as a comma-separated list of repository URLs) or for other means of
> access, described in the ‘Description’ field."*
> 
> So, I updated the DESCRIPTION file as follows:
> Additional_repositories: http://news.mrdwab.com/install_github.R
> 
> Before to proceed to submission, I would like to know if this is the
> right
> way to proceed or I misinterpreted the submission procedure.
> 
> Thank you for reading this email,
> Best,
>

__
R-package-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-package-devel

[R-pkg-devel] issues with SOfun - package upload

2017-11-08 Thread LUCA BELMONTE 
Good evening,

I am trying to upload my package, called PdPDB 2.0.
When building and checking the package with R-studio with --as-cran option
selected, everything looks ok but, once I tried to upload the package to
CRAN I had the following reply:

*"Strong dependencies not in mainstream repositories:*
*  SOfun*
** checking package namespace information ... OK*
** checking package dependencies ... ERROR*
*Package required but not available: 'SOfun'"*

I understand the issue it with SOfun that is a package I downloaded and
installed from this github url: https://github.com/mrdwab/SOfun

I came back to CARN policies and I have read:


*"Packages on which a CRAN package depends should be available from a
mainstream repository: if any mentioned in ‘Suggests’ or ‘Enhances’ fields
are not from such a repository, where to obtain them at a repository should
be specified in an ‘Additional_repositories’ field of the DESCRIPTION file
(as a comma-separated list of repository URLs) or for other means of
access, described in the ‘Description’ field."*

So, I updated the DESCRIPTION file as follows:
Additional_repositories: http://news.mrdwab.com/install_github.R

Before to proceed to submission, I would like to know if this is the right
way to proceed or I misinterpreted the submission procedure.

Thank you for reading this email,
Best,

-- 
Luca Belmonte, PhD

Dept. Life Sciences,
University of Modena and Reggio Emilia

Mobile: +39 328 45 81 762

[[alternative HTML version deleted]]

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