[sage-devel] Re: Broken optional packages...
Hi William, Zitat von William Stein : 2. Another broken package is p_group_cohomology which doesn't build: pGroupCohomology/resolution.pxd:21:0: 'interrupt.pxi' not found I don't know a fix. I do, and it ''is'' fixed: See http://sage.math.washington.edu/home/SimonKing/Cohomology/p_group_cohomology-2.1.4.p1.spkg and trac ticket #15666. As stated in comment 4, I would prefer to have this reviewed and fixed soon, so that it builds and works in recent Sage versions. Other items on the to do list, such as transition to the new spkg layout, are less urgent from my perspective, and is nothing that I'd have the capacity to do right now. Best regards, Simon This message was sent through https://webmail.uni-jena.de -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To post to this group, send email to sage-devel@googlegroups.com. Visit this group at http://groups.google.com/group/sage-devel. For more options, visit https://groups.google.com/groups/opt_out.
[sage-devel] Re: Broken optional packages...
On Sat, Feb 1, 2014 at 10:36 PM, William Stein wrote: > Hi, > > I just wanted to raise awareness (and apologize) that the > re-organization of the layout of Sage broke so many optional spkg's. > In case people run into similar problems, here's what I'm doing to > workaround this mess for sage-6.2 in SageMathCloud. > > 1. These databases are broken: > > cunningham_tables > database_jones_numfield > database_kohel > database_odlyzko_zeta > database_sloane_oeis > database_stein_watkins_mini.p0 > As per Volker's post ( https://groups.google.com/forum/#!topic/sage-devel/onWFAVz-LDA) these packages need updated copyright information. The copyright for the sloane database is provided in that thread, as is permission to use Andrew Odlyzko's database, but for the others copyright information is still needed. One workaround is to do this: > > # in SAGE_ROOT > ln -s local/share data > > but the SAGE_DATA variable is gone as well... so you have to add this > *BACK* to src/bin/sage-env (after SAGE_SHARE): > > # this is to be compatible with optional packages that haven't > # been updated to not use SAGE_DATA > export SAGE_DATA="$SAGE_SHARE" > > (Hopefully, this can be added back or the packages fixed for sage-6.3.) > > 2. Another broken package is > > p_group_cohomology > > which doesn't build: > > pGroupCohomology/resolution.pxd:21:0: 'interrupt.pxi' not found > > I don't know a fix. > > 3. There's an optional package called pybtex which doesn't work. > > The package TOPCOM-0.17.4 fails to build: > > ./spkg-install: line 11: cd: > /usr/local/sage/sage-6.1/spkg/standard/: No such file or directory > Using this sage -i topcom works just fine for me. If you are doing sage -i TOPCOM you are probably getting the old spkg that doesn't work with the new layout (this should really be fixed so that the packages are case-insensitive). I don't know a fix. > > This is all on Ubuntu 12.04 with pretty much anything imaginable installed. > > Trac http://trac.sagemath.org/ticket/14962 is supposed to be about > packages broken by the git reorganization, but it's closed. > > -- William > > -- > William Stein > Professor of Mathematics > University of Washington > http://wstein.org > -- Andrew -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To post to this group, send email to sage-devel@googlegroups.com. Visit this group at http://groups.google.com/group/sage-devel. For more options, visit https://groups.google.com/groups/opt_out.
[sage-devel] Broken optional packages...
Hi, I just wanted to raise awareness (and apologize) that the re-organization of the layout of Sage broke so many optional spkg's. In case people run into similar problems, here's what I'm doing to workaround this mess for sage-6.2 in SageMathCloud. 1. These databases are broken: cunningham_tables database_jones_numfield database_kohel database_odlyzko_zeta database_sloane_oeis database_stein_watkins_mini.p0 One workaround is to do this: # in SAGE_ROOT ln -s local/share data but the SAGE_DATA variable is gone as well... so you have to add this *BACK* to src/bin/sage-env (after SAGE_SHARE): # this is to be compatible with optional packages that haven't # been updated to not use SAGE_DATA export SAGE_DATA="$SAGE_SHARE" (Hopefully, this can be added back or the packages fixed for sage-6.3.) 2. Another broken package is p_group_cohomology which doesn't build: pGroupCohomology/resolution.pxd:21:0: 'interrupt.pxi' not found I don't know a fix. 3. There's an optional package called pybtex which doesn't work. The package TOPCOM-0.17.4 fails to build: ./spkg-install: line 11: cd: /usr/local/sage/sage-6.1/spkg/standard/: No such file or directory I don't know a fix. This is all on Ubuntu 12.04 with pretty much anything imaginable installed. Trac http://trac.sagemath.org/ticket/14962 is supposed to be about packages broken by the git reorganization, but it's closed. -- William -- William Stein Professor of Mathematics University of Washington http://wstein.org -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To post to this group, send email to sage-devel@googlegroups.com. Visit this group at http://groups.google.com/group/sage-devel. For more options, visit https://groups.google.com/groups/opt_out.
[sage-devel] Re: pip
On 2/1/14 9:33 PM, William Stein wrote: Hi, I think we should include pip with Sage. It's now the standard Python package manager, and anybody using Sage now should always do this with their new Sage install, so they can install/upgrade/remove(!)/etc., packages. wget https://raw.github.com/pypa/pip/master/contrib/get-pip.py ./sage -python get-pip.py I don't plan to do the work in getting pip into Sage. But if somebody else does, I would strongly encourage it. I'm not asking for a vote at this point, until at least somebody volunteers. I'm curious what people think though. Here's the webpage for pip: http://www.pip-installer.org/en/latest/ +1. I always install it as practically the first thing. Jason -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To post to this group, send email to sage-devel@googlegroups.com. Visit this group at http://groups.google.com/group/sage-devel. For more options, visit https://groups.google.com/groups/opt_out.
[sage-devel] pip
Hi, I think we should include pip with Sage. It's now the standard Python package manager, and anybody using Sage now should always do this with their new Sage install, so they can install/upgrade/remove(!)/etc., packages. wget https://raw.github.com/pypa/pip/master/contrib/get-pip.py ./sage -python get-pip.py I don't plan to do the work in getting pip into Sage. But if somebody else does, I would strongly encourage it. I'm not asking for a vote at this point, until at least somebody volunteers. I'm curious what people think though. Here's the webpage for pip: http://www.pip-installer.org/en/latest/ William -- William Stein Professor of Mathematics University of Washington http://wstein.org -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To post to this group, send email to sage-devel@googlegroups.com. Visit this group at http://groups.google.com/group/sage-devel. For more options, visit https://groups.google.com/groups/opt_out.
[sage-devel] Re: account on an ARM server (and the usual floating point troubles)
On 2014-02-01, cl...@jhcloos.com wrote: > Dima Pasechnik writes: > >> and the output inserted by Maxima on ARM: >> (%i1) elliptic_e(0.5, 0.1); >> (%o1) .4980113944988315 >> as compared to x86_64: >> (%i1) elliptic_e(0.5, 0.1); >> (%o1) .49801139449883153 > > FWIW, maxima compiled with sbcl on amd64 agrees with the arm output > above. Ie, exactly 16 digits. > > Perhaps the issue is with ecls? I tried the latest maxima built with GCL on ARM, and the output is again different: 0.49801139449883 I asked on the maxima mailing list if they have an idea why this is so wildly different accross platforms and compilers... Dima -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To post to this group, send email to sage-devel@googlegroups.com. Visit this group at http://groups.google.com/group/sage-devel. For more options, visit https://groups.google.com/groups/opt_out.
[sage-devel] Re: Embedded LaTeX do not show up in Sage 6.1 notebook
On 02/01/2014 10:14 PM, Eric Gourgoulhon wrote: Hi, I've just made a fresh install of Sage 6.1 from the sources (via git clone) and noticed that LaTeX formulas in the notebook are not rendered by Mathjax: they remain between $ symbols, as they have been typed. This regards LaTeX formulas typed as comments in the text between the cells, not the output cells (in the latter, the LaTeX display is OK, except for a color problem: there is some mix of blue and dark green). There are some error messages displayed in the console, which I copy below. I tried with two different browsers (Firefox and Chromium). With Sage 6.0 everything was OK. Do others have the same problem ? Eric. You can fix it temporarily by doing the modification in https://github.com/sagemath/sagenb/issues/195#issuecomment-33885044 The modification has to be made to the file SAGE_ROOT/local/lib/python/site-packages/sagenb-0.10.7*/sagenb/misc/misc.py -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To post to this group, send email to sage-devel@googlegroups.com. Visit this group at http://groups.google.com/group/sage-devel. For more options, visit https://groups.google.com/groups/opt_out.
[sage-devel] Re: account on an ARM server (and the usual floating point troubles)
Dima Pasechnik writes: > and the output inserted by Maxima on ARM: > (%i1) elliptic_e(0.5, 0.1); > (%o1) .4980113944988315 > as compared to x86_64: > (%i1) elliptic_e(0.5, 0.1); > (%o1) .49801139449883153 FWIW, maxima compiled with sbcl on amd64 agrees with the arm output above. Ie, exactly 16 digits. Perhaps the issue is with ecls? -JimC -- James Cloos OpenPGP: 1024D/ED7DAEA6 -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To post to this group, send email to sage-devel@googlegroups.com. Visit this group at http://groups.google.com/group/sage-devel. For more options, visit https://groups.google.com/groups/opt_out.
[sage-devel] Finite Elements Methods -packages in Sage
There are many open-source FEM packages which are good in one thing but bad in another. So a good thing to do would be to make a package which uses the accurate parts of each single FEM -package. Are there any plans to include some good code of finite element packages in Sage? -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To post to this group, send email to sage-devel@googlegroups.com. Visit this group at http://groups.google.com/group/sage-devel. For more options, visit https://groups.google.com/groups/opt_out.
[sage-devel] Re: Embedded LaTeX do not show up in Sage 6.1 notebook
On 02/01/2014 11:56 PM, P Purkayastha wrote: Thanks for the report. I have opened an issue in sagenb [1]. It's puzzling since I didn't see this during the 6.1.beta* versions. [1] https://github.com/sagemath/sagenb/issues/195 sagenb-0.10.8 (the latest sagenb) + sage-6.1.beta4 works fine. So, the bug is probably introduced in sage after the release of 6.1.beta4. - basu. -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To post to this group, send email to sage-devel@googlegroups.com. Visit this group at http://groups.google.com/group/sage-devel. For more options, visit https://groups.google.com/groups/opt_out.
[sage-devel] Re: Embedded LaTeX do not show up in Sage 6.1 notebook
Thanks for the report. I have opened an issue in sagenb [1]. It's
puzzling since I didn't see this during the 6.1.beta* versions.
[1] https://github.com/sagemath/sagenb/issues/195
On 02/01/2014 10:14 PM, Eric Gourgoulhon wrote:
Hi,
I've just made a fresh install of Sage 6.1 from the sources (via git
clone) and noticed that LaTeX formulas in the notebook are not rendered
by Mathjax: they remain between $ symbols, as they have been typed. This
regards LaTeX formulas typed as comments in the text between the cells,
not the output cells (in the latter, the LaTeX display is OK, except for
a color problem: there is some mix of blue and dark green). There are
some error messages displayed in the console, which I copy below.
I tried with two different browsers (Firefox and Chromium). With Sage
6.0 everything was OK.
Do others have the same problem ?
Eric.
Error messages:
2014-02-01 14:50:14+0100 [-] WSGI application error
Traceback (most recent call last):
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Twisted-13.1.0-py2.7-linux-x86_64.egg/twisted/python/threadpool.py",
line 212, in _worker
o = self.q.get()
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Twisted-13.1.0-py2.7-linux-x86_64.egg/twisted/python/context.py",
line 118, in callWithContext
return self.currentContext().callWithContext(ctx, func, *args,
**kw)
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Twisted-13.1.0-py2.7-linux-x86_64.egg/twisted/python/context.py",
line 83, in callWithContext
self.contexts.pop()
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Twisted-13.1.0-py2.7-linux-x86_64.egg/twisted/web/wsgi.py",
line 340, in run
self.started = True
--- ---
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Twisted-13.1.0-py2.7-linux-x86_64.egg/twisted/web/wsgi.py",
line 315, in run
appIterator = self.application(self.environ, self.startResponse)
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py",
line 1836, in __call__
return self.wsgi_app(environ, start_response)
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py",
line 1820, in wsgi_app
response = self.make_response(self.handle_exception(e))
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py",
line 1403, in handle_exception
reraise(exc_type, exc_value, tb)
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py",
line 1817, in wsgi_app
response = self.full_dispatch_request()
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py",
line 1477, in full_dispatch_request
rv = self.handle_user_exception(e)
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py",
line 1381, in handle_user_exception
reraise(exc_type, exc_value, tb)
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py",
line 1475, in full_dispatch_request
rv = self.dispatch_request()
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py",
line 1461, in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/sagenb-0.10.7.2-py2.7.egg/sagenb/flask_version/base.py",
line 144, in mathjax_js
data = render_template('js/mathjax_sage.js',
theme_mathjax_macros=mathjax_macros)
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/templating.py",
line 128, in render_template
context, ctx.app)
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/templating.py",
line 110, in _render
rv = template.render(context)
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Jinja2-2.5.5-py2.7.egg/jinja2/environment.py",
line 891, in render
return self.environment.handle_exception(exc_info, True)
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/sagenb-0.10.7.2-py2.7.egg/sagenb/data/sage/js/mathjax_sage.js",
line 30, in top-level template code
{{ theme_mathjax_macros|join(',\n') }}
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Jinja2-2.5.5-py2.7.egg/jinja2/filters.py",
line 241, in do_join
return unicode(d).join(imap(unicode, value))
exceptions.TypeError: 'function' object is not iterable
--
You recei
[sage-devel] Embedded LaTeX do not show up in Sage 6.1 notebook
Hi,
I've just made a fresh install of Sage 6.1 from the sources (via git clone)
and noticed that LaTeX formulas in the notebook are not rendered by
Mathjax: they remain between $ symbols, as they have been typed. This
regards LaTeX formulas typed as comments in the text between the cells, not
the output cells (in the latter, the LaTeX display is OK, except for a
color problem: there is some mix of blue and dark green). There are some
error messages displayed in the console, which I copy below.
I tried with two different browsers (Firefox and Chromium). With Sage 6.0
everything was OK.
Do others have the same problem ?
Eric.
Error messages:
2014-02-01 14:50:14+0100 [-] WSGI application error
Traceback (most recent call last):
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Twisted-13.1.0-py2.7-linux-x86_64.egg/twisted/python/threadpool.py",
line 212, in _worker
o = self.q.get()
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Twisted-13.1.0-py2.7-linux-x86_64.egg/twisted/python/context.py",
line 118, in callWithContext
return self.currentContext().callWithContext(ctx, func, *args, **kw)
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Twisted-13.1.0-py2.7-linux-x86_64.egg/twisted/python/context.py",
line 83, in callWithContext
self.contexts.pop()
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Twisted-13.1.0-py2.7-linux-x86_64.egg/twisted/web/wsgi.py",
line 340, in run
self.started = True
--- ---
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Twisted-13.1.0-py2.7-linux-x86_64.egg/twisted/web/wsgi.py",
line 315, in run
appIterator = self.application(self.environ, self.startResponse)
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py",
line 1836, in __call__
return self.wsgi_app(environ, start_response)
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py",
line 1820, in wsgi_app
response = self.make_response(self.handle_exception(e))
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py",
line 1403, in handle_exception
reraise(exc_type, exc_value, tb)
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py",
line 1817, in wsgi_app
response = self.full_dispatch_request()
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py",
line 1477, in full_dispatch_request
rv = self.handle_user_exception(e)
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py",
line 1381, in handle_user_exception
reraise(exc_type, exc_value, tb)
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py",
line 1475, in full_dispatch_request
rv = self.dispatch_request()
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py",
line 1461, in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/sagenb-0.10.7.2-py2.7.egg/sagenb/flask_version/base.py",
line 144, in mathjax_js
data = render_template('js/mathjax_sage.js',
theme_mathjax_macros=mathjax_macros)
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/templating.py",
line 128, in render_template
context, ctx.app)
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/templating.py",
line 110, in _render
rv = template.render(context)
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Jinja2-2.5.5-py2.7.egg/jinja2/environment.py",
line 891, in render
return self.environment.handle_exception(exc_info, True)
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/sagenb-0.10.7.2-py2.7.egg/sagenb/data/sage/js/mathjax_sage.js",
line 30, in top-level template code
{{ theme_mathjax_macros|join(',\n') }}
File
"/home/eric/sage-git/sage-6.1/sage/local/lib/python2.7/site-packages/Jinja2-2.5.5-py2.7.egg/jinja2/filters.py",
line 241, in do_join
return unicode(d).join(imap(unicode, value))
exceptions.TypeError: 'function' object is not iterable
--
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