Re: [sage-devel] Re: OS X Mavericks

2013-11-23 Thread Jeroen Demeyer

On 2013-11-23 06:52, R. Andrew Ohana wrote:

They don't supply a Fortran compiler, which we need. Also as of Xcode 5
they no longer supply gcc (the gcc in PATH is actually clang) and some
packages we include depend explicitly on having gcc as our c compiler.

If anything we need our own compiler now more than before, and this
situation doesn't look like it will be changing given Apple's decisions.


See also http://trac.sagemath.org/ticket/12426

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Re: [sage-devel] Re: OS X Mavericks

2013-11-22 Thread R. Andrew Ohana
They don't supply a Fortran compiler, which we need. Also as of Xcode 5
they no longer supply gcc (the gcc in PATH is actually clang) and some
packages we include depend explicitly on having gcc as our c compiler.

If anything we need our own compiler now more than before, and this
situation doesn't look like it will be changing given Apple's decisions.

Andrew
On Nov 22, 2013 7:47 PM, "Stefan"  wrote:

> Just wondering... has Apple's compiler by any chance improved enough so we
> can stop building our own GCC?
>
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[sage-devel] Re: OS X Mavericks

2013-11-22 Thread Stefan
Just wondering... has Apple's compiler by any chance improved enough so we 
can stop building our own GCC?

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Re: [sage-devel] Re: OS X Mavericks

2013-11-16 Thread Jeroen Demeyer

On 2013-10-23 02:48, yomcat wrote:



On Wednesday, 23 October 2013 10:48:00 UTC+13, yomcat wrote:



On Wednesday, 23 October 2013 10:04:57 UTC+13, yomcat wrote:


I'll go hunting for dev tools.


They're not out yet.


Got some.
Perhaps you should explain the steps that you did to get this far with 
building Sage, such that other people can continue from there.


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Re: [sage-devel] Re: OS X Mavericks

2013-11-16 Thread William Stein
On Sat, Nov 16, 2013 at 12:20 AM, Jeroen Demeyer  wrote:
> On 2013-11-16 06:02, R. Andrew Ohana wrote:
>>
>> Has anyone else been looking into this?
>
> Yes, I tried William's laptop (which is down now). But I didn't get far,
> since /usr/include is missing. Somebody needs to properly install XCode on
> that machine before I can continue.

I spent a while clicking around, trying what you suggested, searching,
etc., with XCode, but no matter what I did /usr/include never got
installed.  Also, yesterday, I stupidly didn't reconnect the
laptop to the correct network, which is why it isn't accessible right
now.

-- 
William Stein
Professor of Mathematics
University of Washington
http://wstein.org

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Re: [sage-devel] Re: OS X Mavericks

2013-11-16 Thread Jeroen Demeyer

On 2013-11-16 06:02, R. Andrew Ohana wrote:

Has anyone else been looking into this?
Yes, I tried William's laptop (which is down now). But I didn't get far, 
since /usr/include is missing. Somebody needs to properly install XCode 
on that machine before I can continue.


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Re: [sage-devel] Re: OS X Mavericks

2013-11-15 Thread R. Andrew Ohana
Has anyone else been looking into this?

Where I've gotten:

scipy:
  easy fix, just add "-D__ACCELERATE__" to CPPFLAGS

polybori:
  this is a phantom bug that I can no longer reproduce (and I don't know
what changed in my environment)

r:
  seems less like an issue with r, than with sqlite -- in particular it
seems CoreData relies more heavily on sqlite now, and the version we build
is missing some stuff that it needs (this is an unfortunate side-effect of
setting DYLD_LIBRARY_PATH)

sage library:
  chokes on -latlas, although setting BLAS2="cblas" seems to resolve the
issue

other:
  upon startup, the sage runtime crashes -- the copy of libstdc++ we build
can't seem to find some stuff


On Wed, Nov 6, 2013 at 2:39 PM, William Stein  wrote:

> -BEGIN PGP SIGNED MESSAGE-
> Hash: SHA1
>
>
>
> On 11/6/13, 2:34 PM, Jean-Pierre Flori wrote:
> >
> >
> > On Wednesday, November 6, 2013 11:20:00 PM UTC+1, William wrote:
> >>
> >> On Mon, Nov 4, 2013 at 5:56 PM, Mike Zabrocki
> >> > wrote:
> >>> [...] After I installed the new command line tools then I was
> >>> able to build
> >> from
> >>> source also for about 3 hours and then I encountered the same
> >>> errors
> >> that
> >>> others are seeing here.
> >>
> >> Hi,
> >>
> >> In the interest of porting Sage to OS X 10.9, I dug up a macbook
> >> pro laptop, did a clean install of OS X 10.9 and dev tools on it,
> >> and put
> >
> >
> > When I get a little more time, I'll try to install Mavericks into a
> > virtual machine (if possible, Lion was quite easy) and give it a
> > shot as well.
> >
> > Best,
>
> Well I just added you to the Sagemath Cloud project, in the hopes you
> can't resist taking a look
>
>
>
> https://cloud.sagemath.com/projects/4148c5ce-7a49-43fd-b558-359172738584/files/
>
> > JP
> >
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-- 
Andrew

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Re: [sage-devel] Re: OS X Mavericks

2013-11-06 Thread William Stein
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1



On 11/6/13, 2:34 PM, Jean-Pierre Flori wrote:
> 
> 
> On Wednesday, November 6, 2013 11:20:00 PM UTC+1, William wrote:
>> 
>> On Mon, Nov 4, 2013 at 5:56 PM, Mike Zabrocki
>> > wrote:
>>> [...] After I installed the new command line tools then I was
>>> able to build
>> from
>>> source also for about 3 hours and then I encountered the same
>>> errors
>> that
>>> others are seeing here.
>> 
>> Hi,
>> 
>> In the interest of porting Sage to OS X 10.9, I dug up a macbook
>> pro laptop, did a clean install of OS X 10.9 and dev tools on it,
>> and put
> 
> 
> When I get a little more time, I'll try to install Mavericks into a
> virtual machine (if possible, Lion was quite easy) and give it a
> shot as well.
> 
> Best,

Well I just added you to the Sagemath Cloud project, in the hopes you
can't resist taking a look


https://cloud.sagemath.com/projects/4148c5ce-7a49-43fd-b558-359172738584/files/

> JP
> 
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Re: [sage-devel] Re: OS X Mavericks

2013-11-06 Thread Jean-Pierre Flori


On Wednesday, November 6, 2013 11:20:00 PM UTC+1, William wrote:
>
> On Mon, Nov 4, 2013 at 5:56 PM, Mike Zabrocki 
> > 
> wrote: 
> >[...] 
> > After I installed the new command line tools then I was able to build 
> from 
> > source also for about 3 hours and then I encountered the same errors 
> that 
> > others are seeing here. 
>
> Hi, 
>
> In the interest of porting Sage to OS X 10.9, I dug up a macbook pro 
> laptop, did a clean install of OS X 10.9 and dev tools on it, and put 

 
When I get a little more time, I'll try to install Mavericks into a virtual 
machine (if possible, Lion was quite easy) and give it a shot as well.

Best,
JP

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Re: [sage-devel] Re: OS X Mavericks

2013-11-06 Thread William Stein
On Mon, Nov 4, 2013 at 5:56 PM, Mike Zabrocki  wrote:
>[...]
> After I installed the new command line tools then I was able to build from
> source also for about 3 hours and then I encountered the same errors that
> others are seeing here.

Hi,

In the interest of porting Sage to OS X 10.9, I dug up a macbook pro
laptop, did a clean install of OS X 10.9 and dev tools on it, and put
it on the web.   I've made project on https://cloud.sagemath.com with
ssh key access to an account on that laptop.   Anybody who is
interested, send me an email (wst...@gmail.com) and I'll add you to
the project, so we can work on porting together.

(I can also just send you a private key so you can connect to the
laptop via ssh from wherever.)

 -- William

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Re: [sage-devel] Re: OS X Mavericks

2013-11-04 Thread Mike Zabrocki
I had updated my Xcode and OS system to 10.9 Mavericks in late October.  I 
was having no problems building and working with patches for a long time 
until I touched some files that required certain certain libraries.  When I 
touched those files I was no longer able to complete 'sage -b'.  

When I tried downloading a copy from source and compiling I was getting 
only about 5-10 minutes into the compile before I was getting an error.  I 
was getting an error long before getting to the polybori stage.

It turns out I needed to download a new copy of the command line tools.  To 
do this I completed the following:
1. Open Xcode
2. from the Xcode menu -> Open Developer Tool -> More Developer Tools ...
3. I needed to log into the Apple Developer website
4. There was a command line tools for OSX Mavericks which I downloaded and 
installed
Note that there is also an update for OSX Mountain Lion so this should not 
only be the problem for 10.9

After I installed the new command line tools then I was able to build from 
source also for about 3 hours and then I encountered the same errors that 
others are seeing here.

-Mike

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Re: [sage-devel] Re: OS X Mavericks

2013-10-28 Thread Chau Nguyen
I tried running make -k, and now I am at the same errors as Michael Welsh...

Best regards,
Chau.


On Mon, Oct 28, 2013 at 5:33 PM, Chau Nguyen wrote:

> Yes, you are right, it still works (I think)
>
> $/Applications/Xcode.app/Contents/Developer/usr/bin/xcodebuild -sdk /
> -find install_name_tool
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/install_name_tool
>
>
> Chau.
> On 28 Oct 2013, at 17:21, Dima Pasechnik  wrote:
>
> > On 2013-10-28, Chau Nguyen  wrote:
> >> No it still stops with the same error.
> >>
> >> Perhaps I figured out what is wrong with my case (sorry, maybe I should
> not have mixed with the existing discussion of Jeroen Demeyer).
> >>
> >> The script tried to run
> >>
> >> /Applications/Xcode.app/Contents/Developer/usr/bin/xcodebuild -sdk /
> -find install_name_tool 2> /dev/null
> >> install_name_tool: error: unable to find utility "install_name_tool",
> not a developer tool or in PATH
> >>
> >> The install_name_tool is in fact in an other place (Xcode 5.0.1)
> >>
> >> $ xcodebuild -sdk / -find install_name_tool
> >>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/install_name_tool
> >>
> >> But I do not know how to fix this. Do you have any suggestion? Thank
> you!
> >
> > What happens if you run
> >
> > /Applications/Xcode.app/Contents/Developer/usr/bin/xcodebuild -sdk /
> -find install_name_tool
> >
> > at the command prompt?
> > (It could be that you have different incarnations of xcodebuild in your
> > path...)
> >
> >>
> >> Regards,
> >> Chau.
> >> On 28 Oct 2013, at 12:11, Dima Pasechnik  wrote:
> >>
> >>> On 2013-10-28, Chau Nguyen  wrote:
>  Yes, I actually do have install_name_tool as well
> 
>  $ which install_name_tool
>  /usr/bin/install_name_tool
> 
>  Which is also in PATH
> >>>
> >>> hmm, weird, can you run the following line in the terminal:
> >>> $ xcodebuild -sdk / -find install_name_tool
> >>>
> >>> for me (on OSX 10.6) it works just fine and prints
> >>> /Developer/usr/bin/install_name_tool
> >>>
> >>>
> >>>
>  $ echo $PATH
> 
> /opt/local/bin:/opt/local/sbin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/opt/X11/bin:/usr/texbin
> 
>  Maybe I try rebuild in the after noon and let you know more... (it
> took some 3 hours to reach the error)
> 
> >>>
> >>> Could it be that you have some stuff in /opt/local/bin or/and
> /opt/local/sbin that affects
> >>> the build?
> >>>
> >>> It could be that there is something that takes precedence over the
> >>> "standard" things in /usr/bin:/bin:/usr/sbin:/sbin
> >>>
> >>> So the next thing to try would be to remove
> >>> /opt/local/bin:/opt/local/sbin: from your PATH and try building from
> the
> >>> start (after "make distclean" or "make clean") again.
> >>>
> >>>
> >>>
>  Thanks,
>  Chau.
>  On 28 Oct 2013, at 10:59, Dima Pasechnik  wrote:
> 
> > On 2013-10-28, Chau Nguyen  wrote:
> >> On Thursday, October 24, 2013 8:50:20 PM UTC+2, Ben Salisbury wrote:
> >>> I am also having an issue building on OS X 10.9, though (I admit)
> I am trying to build the 5.13beta1 version.  My build fails at the polybori
> step:
> >>>
> >>>
> > Install file:
> >
> "build/Users/chaunguyen/Installs/sage-5.12/local/lib/libpolybori-0.8.dylib.3.0.0"
> > as
> >
> "/Users/chaunguyen/Installs/sage-5.12/local/lib/libpolybori-0.8.dylib.3.0.0"
> >
> Chmod("/Users/chaunguyen/Installs/sage-5.12/local/lib/libpolybori-0.8.dylib.3.0.0",
> > 0644)
> > install_name_tool -id @loader_path/libpolybori-0.8.dylib.3.0.0
> >
> /Users/chaunguyen/Installs/sage-5.12/local/lib/libpolybori-0.8.dylib.3.0.0
> > sh: line 1: 98559 Trace/BPT trap: 5
> > /Applications/Xcode.app/Contents/Developer/usr/bin/xcodebuild -sdk /
> > -find install_name_tool 2> /dev/null
> > install_name_tool: error: unable to find utility "install_name_tool",
> > not a developer tool or in PATH
> > scons: ***
> >
> [/Users/chaunguyen/Installs/sage-5.12/local/lib/libpolybori-0.8.dylib.3.0.0]
> > Error 72
> > scons: building terminated because of errors.
> > Error installing PolyBoRi.
> >
> >
> > it seems that install_name_tool has been dropped in XCode 5, hence
> these
> > errors in polybory.
> > E.g. on OSX 10.6 I have it:
> >
> > $ which install_name_tool
> > /usr/bin/install_name_tool
> >
> > Do you have it on your system?
> >>>
> >>> Error installing PolyBoRi.
> >>>
> >>>
> >>>
> >>>
> >>> real1m14.940s
> >>>
> >>> user1m8.348s
> >>>
> >>> sys 0m4.921s
> >>>
> >>>
> 
> >>>
> >>> Error installing package polybori-0.8.3
> >>>
> >>>
> 
> >>>
> >>> Log file is available at
> https://www.dropbox.com/s/ift6cmsi

Re: [sage-devel] Re: OS X Mavericks

2013-10-28 Thread Chau Nguyen
Yes, you are right, it still works (I think) 

$/Applications/Xcode.app/Contents/Developer/usr/bin/xcodebuild -sdk / -find 
install_name_tool
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/install_name_tool


Chau.
On 28 Oct 2013, at 17:21, Dima Pasechnik  wrote:

> On 2013-10-28, Chau Nguyen  wrote:
>> No it still stops with the same error.
>> 
>> Perhaps I figured out what is wrong with my case (sorry, maybe I should not 
>> have mixed with the existing discussion of Jeroen Demeyer).
>> 
>> The script tried to run
>> 
>> /Applications/Xcode.app/Contents/Developer/usr/bin/xcodebuild -sdk / -find 
>> install_name_tool 2> /dev/null
>> install_name_tool: error: unable to find utility "install_name_tool", not a 
>> developer tool or in PATH
>> 
>> The install_name_tool is in fact in an other place (Xcode 5.0.1)
>> 
>> $ xcodebuild -sdk / -find install_name_tool
>> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/install_name_tool
>> 
>> But I do not know how to fix this. Do you have any suggestion? Thank you!
> 
> What happens if you run
> 
> /Applications/Xcode.app/Contents/Developer/usr/bin/xcodebuild -sdk / -find 
> install_name_tool
> 
> at the command prompt?
> (It could be that you have different incarnations of xcodebuild in your
> path...)
> 
>> 
>> Regards,
>> Chau.
>> On 28 Oct 2013, at 12:11, Dima Pasechnik  wrote:
>> 
>>> On 2013-10-28, Chau Nguyen  wrote:
 Yes, I actually do have install_name_tool as well
 
 $ which install_name_tool
 /usr/bin/install_name_tool
 
 Which is also in PATH
>>> 
>>> hmm, weird, can you run the following line in the terminal: 
>>> $ xcodebuild -sdk / -find install_name_tool
>>> 
>>> for me (on OSX 10.6) it works just fine and prints 
>>> /Developer/usr/bin/install_name_tool
>>> 
>>> 
>>> 
 $ echo $PATH
 /opt/local/bin:/opt/local/sbin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/opt/X11/bin:/usr/texbin
 
 Maybe I try rebuild in the after noon and let you know more... (it took 
 some 3 hours to reach the error)
 
>>> 
>>> Could it be that you have some stuff in /opt/local/bin or/and 
>>> /opt/local/sbin that affects
>>> the build?
>>> 
>>> It could be that there is something that takes precedence over the
>>> "standard" things in /usr/bin:/bin:/usr/sbin:/sbin 
>>> 
>>> So the next thing to try would be to remove
>>> /opt/local/bin:/opt/local/sbin: from your PATH and try building from the
>>> start (after "make distclean" or "make clean") again.
>>> 
>>> 
>>> 
 Thanks,
 Chau.
 On 28 Oct 2013, at 10:59, Dima Pasechnik  wrote:
 
> On 2013-10-28, Chau Nguyen  wrote:
>> On Thursday, October 24, 2013 8:50:20 PM UTC+2, Ben Salisbury wrote:
>>> I am also having an issue building on OS X 10.9, though (I admit) I am 
>>> trying to build the 5.13beta1 version.  My build fails at the polybori 
>>> step:
>>> 
>>> 
> Install file:
> "build/Users/chaunguyen/Installs/sage-5.12/local/lib/libpolybori-0.8.dylib.3.0.0"
> as
> "/Users/chaunguyen/Installs/sage-5.12/local/lib/libpolybori-0.8.dylib.3.0.0"
> Chmod("/Users/chaunguyen/Installs/sage-5.12/local/lib/libpolybori-0.8.dylib.3.0.0",
> 0644)
> install_name_tool -id @loader_path/libpolybori-0.8.dylib.3.0.0
> /Users/chaunguyen/Installs/sage-5.12/local/lib/libpolybori-0.8.dylib.3.0.0
> sh: line 1: 98559 Trace/BPT trap: 5
> /Applications/Xcode.app/Contents/Developer/usr/bin/xcodebuild -sdk /
> -find install_name_tool 2> /dev/null
> install_name_tool: error: unable to find utility "install_name_tool",
> not a developer tool or in PATH
> scons: ***
> [/Users/chaunguyen/Installs/sage-5.12/local/lib/libpolybori-0.8.dylib.3.0.0]
> Error 72
> scons: building terminated because of errors.
> Error installing PolyBoRi.
> 
> 
> it seems that install_name_tool has been dropped in XCode 5, hence these
> errors in polybory.
> E.g. on OSX 10.6 I have it: 
> 
> $ which install_name_tool 
> /usr/bin/install_name_tool
> 
> Do you have it on your system?
>>> 
>>> Error installing PolyBoRi.
>>> 
>>> 
>>> 
>>> 
>>> real1m14.940s
>>> 
>>> user1m8.348s
>>> 
>>> sys 0m4.921s
>>> 
>>> 
>>> 
>>> Error installing package polybori-0.8.3
>>> 
>>> 
>>> 
>>> Log file is available at 
>>> https://www.dropbox.com/s/ift6cmsilov8sqd/polybori-0.8.3.log.  
>>> 
>>> 
>>> Any solutions or suggestions?  (I'm making with 'make -k' now.)
>>> 
>>> 
>>> Ben
>> 
>> I had the same problem when building sage 5.12. I used simple "make".
>> 
>> My log files are 
>> 
>> https://dl.dropboxusercontent.com/u/68207449/install.log
>> 

[sage-devel] Re: OS X Mavericks

2013-10-28 Thread Dima Pasechnik
On 2013-10-28, Chau Nguyen  wrote:
> No it still stops with the same error.
>
> Perhaps I figured out what is wrong with my case (sorry, maybe I should not 
> have mixed with the existing discussion of Jeroen Demeyer).
>
> The script tried to run
>
> /Applications/Xcode.app/Contents/Developer/usr/bin/xcodebuild -sdk / -find 
> install_name_tool 2> /dev/null
> install_name_tool: error: unable to find utility "install_name_tool", not a 
> developer tool or in PATH
>
> The install_name_tool is in fact in an other place (Xcode 5.0.1)
>
> $ xcodebuild -sdk / -find install_name_tool
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/install_name_tool
>
> But I do not know how to fix this. Do you have any suggestion? Thank you!

What happens if you run

/Applications/Xcode.app/Contents/Developer/usr/bin/xcodebuild -sdk / -find 
install_name_tool

at the command prompt?
(It could be that you have different incarnations of xcodebuild in your
path...)

>
> Regards,
> Chau.
> On 28 Oct 2013, at 12:11, Dima Pasechnik  wrote:
>
>> On 2013-10-28, Chau Nguyen  wrote:
>>> Yes, I actually do have install_name_tool as well
>>> 
>>> $ which install_name_tool
>>> /usr/bin/install_name_tool
>>> 
>>> Which is also in PATH
>> 
>> hmm, weird, can you run the following line in the terminal: 
>> $ xcodebuild -sdk / -find install_name_tool
>> 
>> for me (on OSX 10.6) it works just fine and prints 
>> /Developer/usr/bin/install_name_tool
>> 
>> 
>> 
>>> $ echo $PATH
>>> /opt/local/bin:/opt/local/sbin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/opt/X11/bin:/usr/texbin
>>> 
>>> Maybe I try rebuild in the after noon and let you know more... (it took 
>>> some 3 hours to reach the error)
>>> 
>> 
>> Could it be that you have some stuff in /opt/local/bin or/and 
>> /opt/local/sbin that affects
>> the build?
>> 
>> It could be that there is something that takes precedence over the
>> "standard" things in /usr/bin:/bin:/usr/sbin:/sbin 
>> 
>> So the next thing to try would be to remove
>> /opt/local/bin:/opt/local/sbin: from your PATH and try building from the
>> start (after "make distclean" or "make clean") again.
>> 
>> 
>> 
>>> Thanks,
>>> Chau.
>>> On 28 Oct 2013, at 10:59, Dima Pasechnik  wrote:
>>> 
 On 2013-10-28, Chau Nguyen  wrote:
> On Thursday, October 24, 2013 8:50:20 PM UTC+2, Ben Salisbury wrote:
>> I am also having an issue building on OS X 10.9, though (I admit) I am 
>> trying to build the 5.13beta1 version.  My build fails at the polybori 
>> step:
>> 
>> 
 Install file:
 "build/Users/chaunguyen/Installs/sage-5.12/local/lib/libpolybori-0.8.dylib.3.0.0"
 as
 "/Users/chaunguyen/Installs/sage-5.12/local/lib/libpolybori-0.8.dylib.3.0.0"
 Chmod("/Users/chaunguyen/Installs/sage-5.12/local/lib/libpolybori-0.8.dylib.3.0.0",
 0644)
 install_name_tool -id @loader_path/libpolybori-0.8.dylib.3.0.0
 /Users/chaunguyen/Installs/sage-5.12/local/lib/libpolybori-0.8.dylib.3.0.0
 sh: line 1: 98559 Trace/BPT trap: 5
 /Applications/Xcode.app/Contents/Developer/usr/bin/xcodebuild -sdk /
 -find install_name_tool 2> /dev/null
 install_name_tool: error: unable to find utility "install_name_tool",
 not a developer tool or in PATH
 scons: ***
 [/Users/chaunguyen/Installs/sage-5.12/local/lib/libpolybori-0.8.dylib.3.0.0]
 Error 72
 scons: building terminated because of errors.
 Error installing PolyBoRi.
 
 
 it seems that install_name_tool has been dropped in XCode 5, hence these
 errors in polybory.
 E.g. on OSX 10.6 I have it: 
 
 $ which install_name_tool 
 /usr/bin/install_name_tool
 
 Do you have it on your system?
>> 
>> Error installing PolyBoRi.
>> 
>> 
>> 
>> 
>> real 1m14.940s
>> 
>> user 1m8.348s
>> 
>> sys  0m4.921s
>> 
>> 
>> 
>> Error installing package polybori-0.8.3
>> 
>> 
>> 
>> Log file is available at 
>> https://www.dropbox.com/s/ift6cmsilov8sqd/polybori-0.8.3.log.  
>> 
>> 
>> Any solutions or suggestions?  (I'm making with 'make -k' now.)
>> 
>> 
>> Ben
> 
> I had the same problem when building sage 5.12. I used simple "make".
> 
> My log files are 
> 
> https://dl.dropboxusercontent.com/u/68207449/install.log
> 
> https://dl.dropboxusercontent.com/u/68207449/polybori-0.8.3.log
> 
> Best regards,
> Chau.
> 
 
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[sage-devel] Re: OS X Mavericks

2013-10-28 Thread Dima Pasechnik
On 2013-10-28, Chau Nguyen  wrote:
> Yes, I actually do have install_name_tool as well
>
> $ which install_name_tool
> /usr/bin/install_name_tool
>
> Which is also in PATH

hmm, weird, can you run the following line in the terminal: 
$ xcodebuild -sdk / -find install_name_tool

for me (on OSX 10.6) it works just fine and prints 
/Developer/usr/bin/install_name_tool



> $ echo $PATH
> /opt/local/bin:/opt/local/sbin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/opt/X11/bin:/usr/texbin
>
> Maybe I try rebuild in the after noon and let you know more... (it took some 
> 3 hours to reach the error)
>

Could it be that you have some stuff in /opt/local/bin or/and /opt/local/sbin 
that affects
the build?

It could be that there is something that takes precedence over the
"standard" things in /usr/bin:/bin:/usr/sbin:/sbin 

So the next thing to try would be to remove
/opt/local/bin:/opt/local/sbin: from your PATH and try building from the
start (after "make distclean" or "make clean") again.



> Thanks,
> Chau.
> On 28 Oct 2013, at 10:59, Dima Pasechnik  wrote:
>
>> On 2013-10-28, Chau Nguyen  wrote:
>>> On Thursday, October 24, 2013 8:50:20 PM UTC+2, Ben Salisbury wrote:
 I am also having an issue building on OS X 10.9, though (I admit) I am 
 trying to build the 5.13beta1 version.  My build fails at the polybori 
 step:
 
 
>> Install file:
>> "build/Users/chaunguyen/Installs/sage-5.12/local/lib/libpolybori-0.8.dylib.3.0.0"
>> as
>> "/Users/chaunguyen/Installs/sage-5.12/local/lib/libpolybori-0.8.dylib.3.0.0"
>> Chmod("/Users/chaunguyen/Installs/sage-5.12/local/lib/libpolybori-0.8.dylib.3.0.0",
>> 0644)
>> install_name_tool -id @loader_path/libpolybori-0.8.dylib.3.0.0
>> /Users/chaunguyen/Installs/sage-5.12/local/lib/libpolybori-0.8.dylib.3.0.0
>> sh: line 1: 98559 Trace/BPT trap: 5
>> /Applications/Xcode.app/Contents/Developer/usr/bin/xcodebuild -sdk /
>> -find install_name_tool 2> /dev/null
>> install_name_tool: error: unable to find utility "install_name_tool",
>> not a developer tool or in PATH
>> scons: ***
>> [/Users/chaunguyen/Installs/sage-5.12/local/lib/libpolybori-0.8.dylib.3.0.0]
>> Error 72
>> scons: building terminated because of errors.
>> Error installing PolyBoRi.
>> 
>> 
>> it seems that install_name_tool has been dropped in XCode 5, hence these
>> errors in polybory.
>> E.g. on OSX 10.6 I have it: 
>> 
>> $ which install_name_tool 
>> /usr/bin/install_name_tool
>> 
>> Do you have it on your system?
 
 Error installing PolyBoRi.
 
 
 
 
 real   1m14.940s
 
 user   1m8.348s
 
 sys0m4.921s
 
 
 
 Error installing package polybori-0.8.3
 
 
 
 Log file is available at 
 https://www.dropbox.com/s/ift6cmsilov8sqd/polybori-0.8.3.log.  
 
 
 Any solutions or suggestions?  (I'm making with 'make -k' now.)
 
 
 Ben
>>> 
>>> I had the same problem when building sage 5.12. I used simple "make".
>>> 
>>> My log files are 
>>> 
>>> https://dl.dropboxusercontent.com/u/68207449/install.log
>>> 
>>> https://dl.dropboxusercontent.com/u/68207449/polybori-0.8.3.log
>>> 
>>> Best regards,
>>> Chau.
>>> 
>> 
>> -- 
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[sage-devel] Re: OS X Mavericks

2013-10-28 Thread Dima Pasechnik
On 2013-10-28, Chau Nguyen  wrote:
> On Thursday, October 24, 2013 8:50:20 PM UTC+2, Ben Salisbury wrote:
>> I am also having an issue building on OS X 10.9, though (I admit) I am 
>> trying to build the 5.13beta1 version.  My build fails at the polybori step:
>> 
>> 
Install file:
"build/Users/chaunguyen/Installs/sage-5.12/local/lib/libpolybori-0.8.dylib.3.0.0"
as
"/Users/chaunguyen/Installs/sage-5.12/local/lib/libpolybori-0.8.dylib.3.0.0"
Chmod("/Users/chaunguyen/Installs/sage-5.12/local/lib/libpolybori-0.8.dylib.3.0.0",
0644)
install_name_tool -id @loader_path/libpolybori-0.8.dylib.3.0.0
/Users/chaunguyen/Installs/sage-5.12/local/lib/libpolybori-0.8.dylib.3.0.0
sh: line 1: 98559 Trace/BPT trap: 5
/Applications/Xcode.app/Contents/Developer/usr/bin/xcodebuild -sdk /
-find install_name_tool 2> /dev/null
install_name_tool: error: unable to find utility "install_name_tool",
not a developer tool or in PATH
scons: ***
[/Users/chaunguyen/Installs/sage-5.12/local/lib/libpolybori-0.8.dylib.3.0.0]
Error 72
scons: building terminated because of errors.
Error installing PolyBoRi.


it seems that install_name_tool has been dropped in XCode 5, hence these
errors in polybory.
E.g. on OSX 10.6 I have it: 

$ which install_name_tool 
/usr/bin/install_name_tool

Do you have it on your system?
>> 
>> Error installing PolyBoRi.
>> 
>> 
>> 
>> 
>> real 1m14.940s
>> 
>> user 1m8.348s
>> 
>> sys  0m4.921s
>> 
>> 
>> 
>> Error installing package polybori-0.8.3
>> 
>> 
>> 
>> Log file is available at 
>> https://www.dropbox.com/s/ift6cmsilov8sqd/polybori-0.8.3.log.  
>> 
>> 
>> Any solutions or suggestions?  (I'm making with 'make -k' now.)
>> 
>> 
>> Ben
>
> I had the same problem when building sage 5.12. I used simple "make".
>
> My log files are 
>
> https://dl.dropboxusercontent.com/u/68207449/install.log
>
> https://dl.dropboxusercontent.com/u/68207449/polybori-0.8.3.log
>
> Best regards,
> Chau.
>

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Re: [sage-devel] Re: OS X Mavericks

2013-10-24 Thread yomcat


On Wednesday, 23 October 2013 16:36:12 UTC+13, yomcat wrote:
>
>
>
> On Wednesday, 23 October 2013 14:57:38 UTC+13, William wrote:
>>
>> That's great news.  Could you try running the test suite, i.e., go to 
>> root folder of the install and type 
>>
>>  make test 
>>
>
> It fails at various points. I have to go home now, but the log is at 
> https://dl.dropboxusercontent.com/u/32868672/test.log 
>

The full copy/paste from Terminal is at 
https://dl.dropboxusercontent.com/u/32868672/test.txt

Michael 

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Re: [sage-devel] Re: OS X Mavericks

2013-10-23 Thread John H Palmieri


On Wednesday, October 23, 2013 11:08:50 AM UTC-7, yomcat wrote:
>
>
> On 24/10/2013, at 0701, John H Palmieri > 
> wrote: 
>
> > - You might also need to manually install the command-line tools: from 
> the terminal, run 
> > 
> >   xcode-select --install 
> > 
> > and click "Install" in the pop-up. (I don't know if this step is 
> required, but I did it.) 
>
> This step is required, but I just grabbed the tools from ADC. Your way is 
> "easier" - maybe it should be in the readme


See http://trac.sagemath.org/ticket/15319.

-- 
John
 

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Re: [sage-devel] Re: OS X Mavericks

2013-10-23 Thread Michael Welsh

On 24/10/2013, at 0701, John H Palmieri  wrote:

> - You might also need to manually install the command-line tools: from the 
> terminal, run
> 
>   xcode-select --install
> 
> and click "Install" in the pop-up. (I don't know if this step is required, 
> but I did it.)

This step is required, but I just grabbed the tools from ADC. Your way is 
"easier" - maybe it should be in the readme (especially now that CLT have 
disappeared as a download from inside XCode, with a promise to "download on the 
fly the first time they're required")

I'm building it now on my fast machine. Serial builds are so slow...

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Re: [sage-devel] Re: OS X Mavericks

2013-10-23 Thread John H Palmieri


On Tuesday, October 22, 2013 11:36:14 PM UTC-7, Jeroen Demeyer wrote:
>
> On 2013-10-23 02:48, yomcat wrote: 
> > 
> > 
> > On Wednesday, 23 October 2013 10:48:00 UTC+13, yomcat wrote: 
> > 
> > 
> > 
> > On Wednesday, 23 October 2013 10:04:57 UTC+13, yomcat wrote: 
> > 
> > 
> > I'll go hunting for dev tools. 
> > 
> > 
> > They're not out yet. 
> > 
> > 
> > Got some. The build got much further, but broke on polybori - 
> > https://dl.dropboxusercontent.com/u/32868672/polybori-0.8.3.log 
>
> Can you build Sage with MAKE="make -k"? This will force the build to 
> continue as much as possible, even if some package fails. Please report 
> which other packages (if any) fail to build. 
>

Here's what I would suggest:

- first, there is a new version of Xcode (5.0.1, released Oct 22), so 
install that.
- then run Xcode so it installs whatever it thinks it needs to install.
- You might also need to manually install the command-line tools: from the 
terminal, run

  xcode-select --install

and click "Install" in the pop-up. (I don't know if this step is required, 
but I did it.)

Then try building Sage. I'm trying this right now, but I've only installed 
OS X Mavericks on an old slow machine, so it will be a while before I know 
if it works.

-- 
John

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Re: [sage-devel] Re: OS X Mavericks

2013-10-22 Thread Jeroen Demeyer

On 2013-10-23 02:48, yomcat wrote:



On Wednesday, 23 October 2013 10:48:00 UTC+13, yomcat wrote:



On Wednesday, 23 October 2013 10:04:57 UTC+13, yomcat wrote:


I'll go hunting for dev tools.


They're not out yet.


Got some. The build got much further, but broke on polybori -
https://dl.dropboxusercontent.com/u/32868672/polybori-0.8.3.log


Can you build Sage with MAKE="make -k"? This will force the build to 
continue as much as possible, even if some package fails. Please report 
which other packages (if any) fail to build.


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Re: [sage-devel] Re: OS X Mavericks

2013-10-22 Thread yomcat


On Wednesday, 23 October 2013 14:57:38 UTC+13, William wrote:
>
> On Tue, Oct 22, 2013 at 6:49 PM, yomcat > 
> wrote: 
> > 
> > 
> > On Wednesday, 23 October 2013 14:17:25 UTC+13, William wrote: 
> >> 
> >> On Tue, Oct 22, 2013 at 1:29 PM, yomcat  wrote: 
> >> > 
> >> > 
> >> > On Wednesday, 23 October 2013 06:30:47 UTC+13, jason wrote: 
> >> >> 
> >> >> Apple just announced OS X Mavericks is free, available today.  Has 
> >> >> anyone tried compiling Sage on it? 
> >> > 
> >> > 
> >> > I have just installed it. I shall build Sage and report back. One 
> thing 
> >> > I 
> >> 
> >> Can you also try installing our OS X 10.8 binary on it, and seeing if 
> >> it works at all? 
> > 
> > 
> > No problems at all. I didn't try the -app version, but can do if 
> requested. 
>
> That's great news.  Could you try running the test suite, i.e., go to 
> root folder of the install and type 
>
>  make test 
>

It fails at various points. I have to go home now, but the log is at 
https://dl.dropboxusercontent.com/u/32868672/test.log 

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Re: [sage-devel] Re: OS X Mavericks

2013-10-22 Thread William Stein
On Tue, Oct 22, 2013 at 6:49 PM, yomcat  wrote:
>
>
> On Wednesday, 23 October 2013 14:17:25 UTC+13, William wrote:
>>
>> On Tue, Oct 22, 2013 at 1:29 PM, yomcat  wrote:
>> >
>> >
>> > On Wednesday, 23 October 2013 06:30:47 UTC+13, jason wrote:
>> >>
>> >> Apple just announced OS X Mavericks is free, available today.  Has
>> >> anyone tried compiling Sage on it?
>> >
>> >
>> > I have just installed it. I shall build Sage and report back. One thing
>> > I
>>
>> Can you also try installing our OS X 10.8 binary on it, and seeing if
>> it works at all?
>
>
> No problems at all. I didn't try the -app version, but can do if requested.

That's great news.  Could you try running the test suite, i.e., go to
root folder of the install and type

 make test

I don't know if enough dev tools are there to run make though...  If
not, you could do

 ./sage -t devel/sage/sage

which is more or less the same.

William
>>
>>
>> William
>>
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Re: [sage-devel] Re: OS X Mavericks

2013-10-22 Thread yomcat


On Wednesday, 23 October 2013 14:17:25 UTC+13, William wrote:
>
> On Tue, Oct 22, 2013 at 1:29 PM, yomcat > 
> wrote: 
> > 
> > 
> > On Wednesday, 23 October 2013 06:30:47 UTC+13, jason wrote: 
> >> 
> >> Apple just announced OS X Mavericks is free, available today.  Has 
> >> anyone tried compiling Sage on it? 
> > 
> > 
> > I have just installed it. I shall build Sage and report back. One thing 
> I 
>
> Can you also try installing our OS X 10.8 binary on it, and seeing if 
> it works at all? 
>

No problems at all. I didn't try the -app version, but can do if requested. 

>
> William 
>
>

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Re: [sage-devel] Re: OS X Mavericks

2013-10-22 Thread William Stein
On Tue, Oct 22, 2013 at 1:29 PM, yomcat  wrote:
>
>
> On Wednesday, 23 October 2013 06:30:47 UTC+13, jason wrote:
>>
>> Apple just announced OS X Mavericks is free, available today.  Has
>> anyone tried compiling Sage on it?
>
>
> I have just installed it. I shall build Sage and report back. One thing I

Can you also try installing our OS X 10.8 binary on it, and seeing if
it works at all?

William

> noticed is that XCode has done something different with the command-line
> tools. I still seem to have them, but that might be because I already had
> them when I upgraded.
>
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[sage-devel] Re: OS X Mavericks

2013-10-22 Thread Jason Grout

On 10/22/13 12:42 PM, William Stein wrote:

Does that mean I can install it into a virtualbox (say) machine on my
OS X 10.6 desktop (bsd.math), so people can try it... but we still
have a 10.6 buildbot?


It looks like you probably can install it in a virtual machine.  I have 
no clue how easy it is.


Jason


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[sage-devel] Re: OS X Mavericks

2013-10-22 Thread yomcat


On Wednesday, 23 October 2013 10:48:00 UTC+13, yomcat wrote:
>
>
>
> On Wednesday, 23 October 2013 10:04:57 UTC+13, yomcat wrote:
>>
>>
>> I'll go hunting for dev tools. 
>>
>
> They're not out yet.
>

Got some. The build got much further, but broke on polybori - 
https://dl.dropboxusercontent.com/u/32868672/polybori-0.8.3.log 

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[sage-devel] Re: OS X Mavericks

2013-10-22 Thread yomcat


On Wednesday, 23 October 2013 10:04:57 UTC+13, yomcat wrote:
>
>
> I'll go hunting for dev tools. 
>

They're not out yet.

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[sage-devel] Re: OS X Mavericks

2013-10-22 Thread yomcat


On Wednesday, 23 October 2013 09:58:49 UTC+13, yomcat wrote:
>
>
> There seems to be an include directory a level down (in llvm-gcc-4.2). 
> I've sym-linked that in, we'll see what happens now. 
>

It still broke, but further on. 

/Users/yomcat/Downloads/sage-test/spkg/build/gcc-4.7.3.p0/gcc-build/./gcc/xgcc 
-B/Users/yomcat/Downloads/sage-test/spkg/build/gcc-4.7.3.p0/gcc-build/./gcc/ 
-B/Users/yomcat/Downloads/sage-test/local/x86_64-apple-darwin13.0.0/bin/ 
-B/Users/yomcat/Downloads/sage-test/local/x86_64-apple-darwin13.0.0/lib/ 
-isystem 
/Users/yomcat/Downloads/sage-test/local/x86_64-apple-darwin13.0.0/include 
-isystem 
/Users/yomcat/Downloads/sage-test/local/x86_64-apple-darwin13.0.0/sys-include  
  -g -O2 -O2  -g -O2 -DIN_GCC   -W -Wall -Wno-narrowing -Wwrite-strings 
-Wcast-qual -Wstrict-prototypes -Wmissing-prototypes 
-Wold-style-definition  -isystem ./include   -pipe -fno-common -g 
-DIN_LIBGCC2 -fbuilding-libgcc -fno-stack-protector   -pipe -fno-common -I. 
-I. -I../.././gcc -I../../../src/libgcc -I../../../src/libgcc/. 
-I../../../src/libgcc/../gcc -I../../../src/libgcc/../include  
-DHAVE_CC_TLS -DUSE_EMUTLS -o _muldi3_s.o -MT _muldi3_s.o -MD -MP -MF 
_muldi3_s.dep -DSHARED -DL_muldi3 -c ../../../src/libgcc/libgcc2.c

In file included from ../../../src/libgcc/libgcc2.c:29:0:

../../../src/libgcc/../gcc/tsystem.h:88:19: fatal error: stdio.h: No such 
file or directory

compilation terminated.

make[6]: *** [_muldi3_s.o] Error 1

make[5]: *** [all-stage1-target-libgcc] Error 2

make[4]: *** [stage1-bubble] Error 2
make[3]: *** [all] Error 2

I'll go hunting for dev tools. 

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[sage-devel] Re: OS X Mavericks

2013-10-22 Thread yomcat


On Wednesday, 23 October 2013 09:29:35 UTC+13, yomcat wrote:
>
>
>
> On Wednesday, 23 October 2013 06:30:47 UTC+13, jason wrote:
>>
>> Apple just announced OS X Mavericks is free, available today.  Has 
>> anyone tried compiling Sage on it? 
>>
>
> I have just installed it. I shall build Sage and report back. One thing I 
> noticed is that XCode has done something different with the command-line 
> tools. I still seem to have them, but that might be because I already had 
> them when I upgraded.
>

It failed on gcc. Full log at 
https://dl.dropboxusercontent.com/u/32868672/gcc-4.7.3.p0.log

The end was:

The directory that should contain system headers does not exist:

  /usr/include

make[6]: *** [stmp-fixinc] Error 1

make[5]: *** [all-stage1-gcc] Error 2

make[4]: *** [stage1-bubble] Error 2

make[3]: *** [all] Error 2


real 4m32.385s

user 3m23.834s

sys 1m0.647s



Error installing package gcc-4.7.3.p0



Please email sage-devel (http://groups.google.com/group/sage-devel)

explaining the problem and including the relevant part of the log file

  /Users/yomcat/Downloads/sage-test/logs/pkgs/gcc-4.7.3.p0.log

Describe your computer, operating system, etc.

If you want to try to fix the problem yourself, *don't* just cd to

/Users/yomcat/Downloads/sage-test/spkg/build/gcc-4.7.3.p0 and type 'make' 
or whatever is appropriate.

Instead, the following commands setup all environment variables

correctly and load a subshell for you to debug the error:

  (cd '/Users/yomcat/Downloads/sage-test/spkg/build/gcc-4.7.3.p0' && 
'/Users/yomcat/Downloads/sage-test/sage' --sh)

When you are done debugging, you can type "exit" to leave the subshell.



make[2]: *** 
[/Users/yomcat/Downloads/sage-test/spkg/installed/gcc-4.7.3.p0] Error 1

make[1]: *** [all] Error 2

There seems to be an include directory a level down (in llvm-gcc-4.2). I've 
sym-linked that in, we'll see what happens now. 

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[sage-devel] Re: OS X Mavericks

2013-10-22 Thread yomcat


On Wednesday, 23 October 2013 06:30:47 UTC+13, jason wrote:
>
> Apple just announced OS X Mavericks is free, available today.  Has 
> anyone tried compiling Sage on it? 
>

I have just installed it. I shall build Sage and report back. One thing I 
noticed is that XCode has done something different with the command-line 
tools. I still seem to have them, but that might be because I already had 
them when I upgraded.

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