[sage-devel] Re: Sage 3.1.3.alpha3 released
On Intel Mac OS X 10.4, 3.1.3.alpha3 built fine, make test had three doctest failures: - ell_point.py: issue calculating elliptic log, as reported (with fix reported) above - abvar/homspace.py: failure due to timeout (known, that one occured before) - plot.py: failure due to timeout (I don't think I saw this one timeout before) make testlong is still running, I'll give feedback this evening. Cheers, gsw --~--~-~--~~~---~--~~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org -~--~~~~--~~--~--~---
[sage-devel] Re: Sage 3.1.3.alpha3 released
mabshoff wrote: [...] Sources and a sage.math only binary can be found in the usual place at http://sage.math.washington.edu/home/mabshoff/release-cycles-3.1.3/ Please build, test and repot issues. On Fedora 9, 32 bits: -- The following tests failed: sage -t devel/sage/sage/plot/plot.py sage -t devel/sage/sage/combinat/root_system/weyl_characters.py sage -t devel/sage/sage/schemes/elliptic_curves/ell_point.py Total time for all tests: 10011.4 seconds Please see /home/jaap/downloads/sage-3.1.3.alpha3/tmp/test.log for the complete log from this test. [EMAIL PROTECTED] sage-3.1.3.alpha3]$ Known issues I suppose. Jaap --~--~-~--~~~---~--~~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org -~--~~~~--~~--~--~---
[sage-devel] Re: Sage 3.1.3.alpha3 released
On Oct 8, 2008, at 04:49 , mabshoff wrote: Hello folks, this took much longer than I had planned, but I got sick and was also pretty burned out, so finally here we go. There are still a bunch of known problems with 3.1.3.a3: * parallel make is broken for eclib (#4228) * build of R hangs with the latest 10.5 Java update by Apple (#4219). This update also seems to have broken 3D plotting * a doctest failure in sage/schemes/elliptic_curves/ell_point.py caused by #4225 (no ticket yet) Build results: ++Mac OS X, 10.5.5 (Dual 4-core Xeon): Build hung @ 'javac testing' as usual; proceeded after touching R package; otherwise successful ++Mac OS X, 10.4.11 (Core 2 Duo): Build was apparently successful, but there were a lot of failures at this point: building 'sage.structure.sage_object' extension because of a missing libpari-gmp.dylib No obvious differences in the build here except in the successful case, the log showed a lot of warning: multiple definition of xxx warnings. Testing results: ++Mac OS X, 10.5.5 (Dual 4-core Xeon): The following tests failed: sage -t devel/sage/sage/interfaces/expect.py sage -t devel/sage/sage/interfaces/r.py sage -t devel/sage/sage/schemes/elliptic_curves/ell_point.py sage -t devel/sage/sage/stats/r.py sage -t devel/sage/sage/stats/test.py All but the ell_point.py failure seem to be related to the failure of the R build. ++Mac OS X, 10.4.11 (Core 2 Duo): The following tests failed: sage -t devel/sage/sage/interfaces/kash.py sage -t devel/sage/sage/interfaces/lie.py sage -t devel/sage/sage/interfaces/lisp.py sage -t devel/sage/sage/interfaces/macaulay2.py sage -t devel/sage/sage/interfaces/magma.py sage -t devel/sage/sage/interfaces/magma_free.py sage -t devel/sage/sage/interfaces/magma_sim.py sage -t devel/sage/sage/interfaces/maple.py sage -t devel/sage/sage/interfaces/mathematica.py sage -t devel/sage/sage/interfaces/matlab.py sage -t devel/sage/sage/schemes/elliptic_curves/ell_point.py All but the ell_point.py failure were due to: ImportError: dlopen(/Users/tmp/sage-3.1.3.alpha3/local/lib/ python2.5/site-packa\ ges/sage/rings/memory.so, 2): Library not loaded: libcsage.dylib Referenced from: /Users/tmp/sage-3.1.3.alpha3/local/lib/python2.5/ site-packag\ es/sage/rings/memory.so Reason: image not found Logs are found at sage.math.washington.edu:~justin/logs as Xeon-3.1.3.A3.install.log Core-3.1.3.A3.install.log Xeon-3.1.3.A3.test.log Core-3.1.3.A3.test.log Justin -- Justin C. Walker, Curmudgeon at Large Director Institute for the Enhancement of the Director's Income --- Nobody knows the trouble I've been --- --~--~-~--~~~---~--~~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org -~--~~~~--~~--~--~---
[sage-devel] Re: Sage 3.1.3.alpha3 released
Hi, that is very strange, since I cannot confirm the findings of Justin on my Intel (Core 2 Duo) Mac OS X 10.4.11 / XCode 2.5 machine. (Those missing libpar-gmp.dylib messages come up on Mac OS since quite some time, already Sage 2.9.2 has them, they did no harm to my builds so far). @Justin: Which version of Xcode do you use on your OS X 10.4.11 box? (The working one on my box is Xcode 2.5, with gcc -v giving ... build 5370. Get it from https://connect.apple.com/cgi-bin/WebObjects/MemberSite.woa/wa/promo?source=ADCLOGcode=ADCLOG-NEX if you already have created a login. It's at no cost but giving some personal data and an email address.) Above I already noted that Sage 3.1.3.alpha3 did build fine, and had only three failures with make test. Now for make testlong as expected the two timeout failures jsut go away, and the two already known long failures appear (for sr.py, and for ell_finite_filed.py, both have trac tickets in the 3xxx range), so the build went absolutely fine for me! As for the ell_point.py patch trac #4214 of Alex: I reviewed it, and only had one very minor remark, so Alex, if you could upload a patched patch (I tested successfully the proposal I gave in my comment, hint, hint), then another positive review might not be too far away. Cheers, gsw --~--~-~--~~~---~--~~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org -~--~~~~--~~--~--~---
[sage-devel] Re: Sage 3.1.3.alpha3 released
On Oct 9, 2008, at 12:46 , Georg S. Weber wrote: Hi, that is very strange, since I cannot confirm the findings of Justin on my Intel (Core 2 Duo) Mac OS X 10.4.11 / XCode 2.5 machine. (Those missing libpar-gmp.dylib messages come up on Mac OS since quite some time, already Sage 2.9.2 has them, they did no harm to my builds so far). They don't show up in any of my 10.5 builds, but as you say, for 10.4, they seem to be consistently present (from roughly 2.8.7 on). That's a minor mystery. @Justin: Which version of Xcode do you use on your OS X 10.4.11 box? (The working one on my box is Xcode 2.5, with gcc -v giving ... build 5370. I'm using Xcode 2.5, gcc version 4.0.1 (Apple Computer, Inc. build 5370). Get it from https://connect.apple.com/cgi-bin/WebObjects/MemberSite.woa/wa/promo?source=ADCLOGcode=ADCLOG-NEX if you already have created a login. It's at no cost but giving some personal data and an email address.) Believe me, I know this well. I've had an account there for many, many years :-} Above I already noted that Sage 3.1.3.alpha3 did build fine, and had only three failures with make test. There may be some info that I missed in the logs (now on sage.math...) to shed some light, but the failures seemed to have no clear explanation. If you come up with something to try, I'll be happy to give it a shot. In the meantime, I will try the 10.4 build (from scratch) again. Justin -- Justin C. Walker, Curmudgeon-At-Large Institute for the Enhancement of the Director's Income When LuteFisk is outlawed, Only outlaws will have LuteFisk --~--~-~--~~~---~--~~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org -~--~~~~--~~--~--~---
[sage-devel] Re: Sage 3.1.3.alpha3 released
sage -br doesn't seem to work. When I change a file I see the change in the build log however the change doesn't appear when I do somefunction??ENTER or call the function. On Thu, Oct 9, 2008 at 4:02 PM, Justin C. Walker [EMAIL PROTECTED] wrote: On Oct 9, 2008, at 12:46 , Georg S. Weber wrote: Hi, that is very strange, since I cannot confirm the findings of Justin on my Intel (Core 2 Duo) Mac OS X 10.4.11 / XCode 2.5 machine. (Those missing libpar-gmp.dylib messages come up on Mac OS since quite some time, already Sage 2.9.2 has them, they did no harm to my builds so far). They don't show up in any of my 10.5 builds, but as you say, for 10.4, they seem to be consistently present (from roughly 2.8.7 on). That's a minor mystery. @Justin: Which version of Xcode do you use on your OS X 10.4.11 box? (The working one on my box is Xcode 2.5, with gcc -v giving ... build 5370. I'm using Xcode 2.5, gcc version 4.0.1 (Apple Computer, Inc. build 5370). Get it from https://connect.apple.com/cgi-bin/WebObjects/MemberSite.woa/wa/promo?source=ADCLOGcode=ADCLOG-NEX if you already have created a login. It's at no cost but giving some personal data and an email address.) Believe me, I know this well. I've had an account there for many, many years :-} Above I already noted that Sage 3.1.3.alpha3 did build fine, and had only three failures with make test. There may be some info that I missed in the logs (now on sage.math...) to shed some light, but the failures seemed to have no clear explanation. If you come up with something to try, I'll be happy to give it a shot. In the meantime, I will try the 10.4 build (from scratch) again. Justin -- Justin C. Walker, Curmudgeon-At-Large Institute for the Enhancement of the Director's Income When LuteFisk is outlawed, Only outlaws will have LuteFisk --~--~-~--~~~---~--~~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org -~--~~~~--~~--~--~---
[sage-devel] Re: Sage 3.1.3.alpha3 released
On Oct 9, 1:56 pm, Timothy Clemans [EMAIL PROTECTED] wrote: sage -br doesn't seem to work. When I change a file I see the change in the build log however the change doesn't appear when I do somefunction??ENTER or call the function. What specifically goes wrong? Can you give an example? Something fishy goes on it seems. Cheers, Michael --~--~-~--~~~---~--~~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org -~--~~~~--~~--~--~---
[sage-devel] Re: Sage 3.1.3.alpha3 released
On Oct 8, 10:47 am, Justin C. Walker [EMAIL PROTECTED] wrote: On Oct 8, 2008, at 4:49 AM, mabshoff wrote: Hello folks, this took much longer than I had planned, but I got sick and was also pretty burned out, so finally here we go. There are still a bunch of known problems with 3.1.3.a3: * parallel make is broken for eclib (#4228) * build of R hangs with the latest 10.5 Java update by Apple (#4219). This update also seems to have broken 3D plotting A quick check: this *will* hang on 10.5 systems that have done the recent Java 2 update, correct? Is the workaround to 'touch' the appropriate 'r' file in $SAGE_ROOT/spkg/installed and restart the build? Yes, that Java update it to blame. Touching the r file avoids building r, but it does not solve the problem. It does make one doctest fail - other than that there is little else that is noticable. I have a workaorund that is also mentioned on the ticket and I will post an updated spkg once I get my talk done tomorrow. Thanks. Justin Cheers, Michael -- Justin C. Walker, Curmudgeon-At-Large, Director Institute for the Enhancement of the Director's Income The path of least resistance: it's not just for electricity any more. --~--~-~--~~~---~--~~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org -~--~~~~--~~--~--~---
[sage-devel] Re: Sage 3.1.3.alpha3 released
I first tried changing template.py. I have my system clock ahead 1 hour to deal with a problem with my FTP program. In the past I was having trouble because my FTP programming was messing up the time on files. When I do sage -br I see copying build/lib.linux-x86_64-2.5/sage/server/notebook/template.py - /home/tclemans/sage-3.1.3/local/lib/python2.5/site-packages/sage/server/notebook But my changes don't go live. For example I ripped out most of template.py but all the old functions are still showing up. I made a change in twist.py and got the same result. On Thu, Oct 9, 2008 at 5:42 PM, mabshoff [EMAIL PROTECTED] wrote: On Oct 9, 1:56 pm, Timothy Clemans [EMAIL PROTECTED] wrote: sage -br doesn't seem to work. When I change a file I see the change in the build log however the change doesn't appear when I do somefunction??ENTER or call the function. What specifically goes wrong? Can you give an example? Something fishy goes on it seems. Cheers, Michael --~--~-~--~~~---~--~~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org -~--~~~~--~~--~--~---
[sage-devel] Re: Sage 3.1.3.alpha3 released
On Wednesday 08 October 2008, mabshoff wrote: Please build, test and repot issues. I *upgraded* from alpha2 and only see the known doctest failure in sage -t devel/sage/sage/schemes/elliptic_curves/ell_point.py on 64-bit Debian/GNU Linux, Core2Duo Cheers, Martin -- name: Martin Albrecht _pgp: http://pgp.mit.edu:11371/pks/lookup?op=getsearch=0x8EF0DC99 _www: http://www.informatik.uni-bremen.de/~malb _jab: [EMAIL PROTECTED] --~--~-~--~~~---~--~~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org -~--~~~~--~~--~--~---
[sage-devel] Re: Sage 3.1.3.alpha3 released
Hi, I'm just trying to update my sage for SAGE Days 10, but find that the compilation hangs here: checking for paperconf... false checking for java... /usr/bin/java checking for javac... /usr/bin/javac checking for javah... /usr/bin/javah checking for jar... /usr/bin/jar checking whether Java compiler works... This is on Mac OSX Leopard, after moving /opt/local/ to /opt/ local.back by hand. I actually have had a javac process running for 3 hours... Any suggestions? --David --~--~-~--~~~---~--~~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org -~--~~~~--~~--~--~---
[sage-devel] Re: Sage 3.1.3.alpha3 released
P.S. I get the same behavior for 3.1.2. --~--~-~--~~~---~--~~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org -~--~~~~--~~--~--~---
[sage-devel] Re: Sage 3.1.3.alpha3 released
On Wednesday 08 October 2008, David Kohel wrote: Hi, I'm just trying to update my sage for SAGE Days 10, but find that the compilation hangs here: checking for paperconf... false checking for java... /usr/bin/java checking for javac... /usr/bin/javac checking for javah... /usr/bin/javah checking for jar... /usr/bin/jar checking whether Java compiler works... This is on Mac OSX Leopard, after moving /opt/local/ to /opt/ local.back by hand. I actually have had a javac process running for 3 hours... Any suggestions? I think this is this bug: * build of R hangs with the latest 10.5 Java update by Apple (#4219). This update also seems to have broken 3D plotting Cheers, Martin -- name: Martin Albrecht _pgp: http://pgp.mit.edu:11371/pks/lookup?op=getsearch=0x8EF0DC99 _www: http://www.informatik.uni-bremen.de/~malb _jab: [EMAIL PROTECTED] --~--~-~--~~~---~--~~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org -~--~~~~--~~--~--~---
[sage-devel] Re: Sage 3.1.3.alpha3 released
There's a patch waiting for review at trac #4214 fixing that doctest failure (once and for all :). I've moved #4214 to 3.1.3 instead of 3.2 so that it has better visibility. Best, Alex On Thu, Oct 9, 2008 at 1:25 AM, Martin Albrecht [EMAIL PROTECTED] wrote: On Wednesday 08 October 2008, mabshoff wrote: Please build, test and repot issues. I *upgraded* from alpha2 and only see the known doctest failure in sage -t devel/sage/sage/schemes/elliptic_curves/ell_point.py on 64-bit Debian/GNU Linux, Core2Duo Cheers, Martin -- name: Martin Albrecht _pgp: http://pgp.mit.edu:11371/pks/lookup?op=getsearch=0x8EF0DC99 _www: http://www.informatik.uni-bremen.de/~malbhttp://www.informatik.uni-bremen.de/%7Emalb _jab: [EMAIL PROTECTED] -- Alex Ghitza -- Lecturer in Mathematics -- The University of Melbourne -- Australia -- http://www.ms.unimelb.edu.au/~aghitza/ --~--~-~--~~~---~--~~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org -~--~~~~--~~--~--~---
[sage-devel] Re: Sage 3.1.3.alpha3 released
My only failure on an intel mac (10.5) is the ell_point.py test. M. Hampton On Oct 8, 6:49 am, mabshoff [EMAIL PROTECTED] wrote: Hello folks, this took much longer than I had planned, but I got sick and was also pretty burned out, so finally here we go. There are still a bunch of known problems with 3.1.3.a3: * parallel make is broken for eclib (#4228) * build of R hangs with the latest 10.5 Java update by Apple (#4219). This update also seems to have broken 3D plotting * a doctest failure in sage/schemes/elliptic_curves/ell_point.py caused by #4225 (no ticket yet) Most of the above should be pretty easy to fix, but I ran out of time before leaving for SD10 in Nancy in a couple hours. The good news is that he following major issues got merged: * The ReST toolchain with its depenencies * the initial version of the species code Hopefully we can get 3.1.3 out before the start of the coding spring of SD10. As mentioned above most problems have known fixes and just need to be reviewed and merged. But it will be 24 hours until I am back online again, so expect some activity then. Sources and a sage.math only binary can be found in the usual place at http://sage.math.washington.edu/home/mabshoff/release-cycles-3.1.3/ Please build, test and repot issues. Cheers, Michael #3385: Jason Grout: plot_vector_field does not deal with aspect ratios correctly [Reviewed by Mike Hansen] #3665: Mike Hansen: add initial species code [Reviewed by Robert Miller] #3980: Jason Merrill: Find_root bug [Reviewed by Marshall Hampton] #4106: Alex Ghitza: error coercing symbolic variable into polynomial ring modulo 4 (but not mod 3) [Reviewed by William Stein] #4220: Mike Hansen: include Sphinx, Docutils, Jinja, and Pygments in Sage [Reviewed by Michael Abshoff] #4224: Carl Witty: small error in new question-mark interval printing [Reviewed by Michael Abshoff] #4225: Robert Bradsahw: faster sqrt for complex numbers [Reviewed by Alex Ghitza] #4226: Robert Bradshaw: Real Lazy Field [Reviewed by Mike Hansen] #4227: Michael Abshoff: Sage 3.1.3.alpha2: many Magma doctests that should are not optional [Reviewed by Alex Ghitza] #4232: Robert Bradshaw: #249 causes bug in importing large lists [Reviewed by Jason Grout] #4233: John Palmieri: fix doctest failure due to deprecation warning in calculus/all.py [Reviewed by Mike Hansen] #4234: Minh Nguyen: typos in programming guide [Reviewed by Michael Abshoff] #4235: Minh Nguyen: typos in and enhancement to installation guide [Reviewed by Michael Abshoff] #4238: David Fu, Robert Bradshaw: option to create local .so file for .spyx modules [Reviewed by Georg Weber] #4239: Francis Clarke: fix for problems with zero kernel and images [Reviewed by Georg Weber] #4247: William Stein: plotting -- bug in text and pdf export [Reviewed by Mike Hansen] --~--~-~--~~~---~--~~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org -~--~~~~--~~--~--~---
