Re: [sage-devel] Re: Error rebuilding Sage (ncurses)

[Dima Pasechnik]

you can merge individual commits into a branch by doing `git cherry-pick 
`.
This should suffice for you to create a branch you like (but do read more 
docs on git...)


On Wednesday, July 26, 2017 at 6:20:24 PM UTC+1, jhonrubia6 wrote:
>
> Finally I've found the error but I do not know how to unravel it so any 
> help will be welcome
> I am working on ticket #22081, and in some commit (ea92d27) I made the 
> error of adding src/bin/sage-env-config file to the commit pushed. After 
> that I did some corrections on code (4851eed->bc476cd->9d94d5c) then I got 
> an error on trac as it was unable to merge (I didn't know yet my error on 
> the previous commit) so I did some merge commits 
> (aee6930->7199b81->787cf58).
> Now what I would like to do is apply bc476cd and then 9d94d5c to the head 
> and nothing more, discarding the other commits. I do not know if it is even 
> possible. If not, how do I discard the src/bin/sage-env-config file (which 
> my settings) that is probably stopping trac to merge?
>
> thanks in advance
>
> El domingo, 16 de julio de 2017, 20:50:03 (UTC+2), jhonrubia6 escribió:
>>
>>
>>
>> El jueves, 6 de julio de 2017, 20:52:02 (UTC+2), François Bissey escribió:
>>>
>>> The OS X file system only fake case sensitivity, so “Sage” and “sage” 
>>> are actually the same folder. 
>>>
>>> Now it is very suspicious. It fails because permission is denied on 
>>> > /Users/J_Honrubia/Sage/sage/local/var/lib/sage/installed 
>>> Yet you are t143730 and you are building from /Users/t143730/sage/ 
>>> so do you have symlinks to another user account for which you 
>>> don’t have permission with this user? 
>>> the symlink could be 
>>> local 
>>> local/var 
>>> local/var/lib 
>>> local/var/lib/sage 
>>> local/var/lib/sage/installed 
>>>
>>
>>
>> No François, there is no J_Honrubia user on this machine and neither is a 
>> symlink on this subdirectories you suggested. Is there a target in the 
>> makefile to clean this mess :-)
>>  
>>
>>>
>>> François 
>>>
>>> > On 7/07/2017, at 05:35, jhonrubia6  wrote: 
>>> > 
>>> > this is the complete log, somehow it is trying to create a S 
>>> > /Library/Developer/CommandLineTools/usr/bin/make build/make/Makefile 
>>> > 
>>> > make[1]: `build/make/Makefile' is up to date. 
>>> > 
>>> > build/bin/sage-logger \ 
>>> > 
>>> > "cd build/make && ./install 'all'" logs/install.log 
>>> > 
>>> > *** ALL ENVIRONMENT VARIABLES BEFORE BUILD: *** 
>>> > 
>>> > 
>>> Apple_PubSub_Socket_Render=/private/tmp/com.apple.launchd.wvo7zYEsAE/Render 
>>> > 
>>> > HOME=/Users/t143730 
>>> > 
>>> > LANG=es_ES.UTF-8 
>>> > 
>>> > LOGNAME=t143730 
>>> > 
>>> > MAKE=make 
>>> > 
>>> > MAKEFLAGS= V=1 
>>> > 
>>> > MAKELEVEL=1 
>>> > 
>>> > MFLAGS= 
>>> > 
>>> > 
>>> PATH=/Users/t143730/sage/build/bin:/Users/t143730/sage/src/bin:/Users/t143730/sage/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/Library/TeX/texbin
>>>  
>>>
>>> > 
>>> > PWD=/Users/t143730/sage/build/make 
>>> > 
>>> > PYTHONPATH=/Users/t143730/sage/local 
>>> > 
>>> > SAGE_EXTCODE=/Users/t143730/sage/local/share/sage/ext 
>>> > 
>>> > SAGE_LOCAL=/Users/t143730/sage/local 
>>> > 
>>> > SAGE_LOGS=/Users/t143730/sage/logs/pkgs 
>>> > 
>>> > 
>>> SAGE_ORIG_PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/Library/TeX/texbin
>>>  
>>>
>>> > 
>>> > SAGE_ORIG_PATH_SET=True 
>>> > 
>>> > SAGE_ROOT=/Users/t143730/sage 
>>> > 
>>> > SAGE_SHARE=/Users/t143730/sage/local/share 
>>> > 
>>> > SAGE_SPKG_INST=/Users/t143730/sage/local/var/lib/sage/installed 
>>> > 
>>> > SAGE_SRC=/Users/t143730/sage/src 
>>> > 
>>> > SAGE_VERSION=8.0.beta4 
>>> > 
>>> > SECURITYSESSIONID=186a7 
>>> > 
>>> > SHELL=/bin/bash 
>>> > 
>>> > SHLVL=4 
>>> > 
>>> > SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.aggQsC0Rbq/Listeners 
>>> > 
>>> > TERM=xterm-256color 
>>> > 
>>> > TERM_PROGRAM=Apple_Terminal 
>>> > 
>>> > TERM_PROGRAM_VERSION=361.1 
>>> > 
>>> > TERM_SESSION_ID=BA2F8976-A25B-4038-8F51-F0CCF658AD18 
>>> > 
>>> > TMPDIR=/var/folders/jz/2g9tqjks4yz7b24v_z7qnjscgn/T/ 
>>> > 
>>> > USER=t143730 
>>> > 
>>> > XPC_FLAGS=0x0 
>>> > 
>>> > XPC_SERVICE_NAME=0 
>>> > 
>>> > _=/usr/bin/env 
>>> > 
>>> > __CF_USER_TEXT_ENCODING=0x1F5:0x0:0x8 
>>> > 
>>> > *** 
>>> > 
>>> > make base 
>>> > 
>>> > make[2]: Nothing to be done for `base'. 
>>> > 
>>> > env SAGE_BUILD_TOOLCHAIN=yes make toolchain 
>>> > 
>>> > make[2]: Nothing to be done for `toolchain'. 
>>> > 
>>> > make toolchain-deps 
>>> > 
>>> > make /Users/t143730/sage/local/var/lib/sage/installed/zlib-1.2.8.p0 
>>> > 
>>> > make[3]: 
>>> `/Users/t143730/sage/local/var/lib/sage/installed/zlib-1.2.8.p0' is up to 
>>> date. 
>>> > 
>>> > make /Users/t143730/sage/local/var/lib/sage/installed/mpir-2.7.2.p0 
>>> > 
>>> > make[3]: 
>>> `/Users/t143730/sage/local/var/lib/sage/installed/mpir-2.7.2.p0' is up to 
>>> date. 
>>> > 
>>> > make /Users/t143730/sage/local/var/lib/sage/installed/mpfr-3.1.5 
>>> > 
>>> > make[3]: 

Re: [sage-devel] Re: Error rebuilding Sage (ncurses)

[jhonrubia6]

Finally I've found the error but I do not know how to unravel it so any 
help will be welcome
I am working on ticket #22081, and in some commit (ea92d27) I made the 
error of adding src/bin/sage-env-config file to the commit pushed. After 
that I did some corrections on code (4851eed->bc476cd->9d94d5c) then I got 
an error on trac as it was unable to merge (I didn't know yet my error on 
the previous commit) so I did some merge commits 
(aee6930->7199b81->787cf58).
Now what I would like to do is apply bc476cd and then 9d94d5c to the head 
and nothing more, discarding the other commits. I do not know if it is even 
possible. If not, how do I discard the src/bin/sage-env-config file (which 
my settings) that is probably stopping trac to merge?

thanks in advance

El domingo, 16 de julio de 2017, 20:50:03 (UTC+2), jhonrubia6 escribió:
>
>
>
> El jueves, 6 de julio de 2017, 20:52:02 (UTC+2), François Bissey escribió:
>>
>> The OS X file system only fake case sensitivity, so “Sage” and “sage” 
>> are actually the same folder. 
>>
>> Now it is very suspicious. It fails because permission is denied on 
>> > /Users/J_Honrubia/Sage/sage/local/var/lib/sage/installed 
>> Yet you are t143730 and you are building from /Users/t143730/sage/ 
>> so do you have symlinks to another user account for which you 
>> don’t have permission with this user? 
>> the symlink could be 
>> local 
>> local/var 
>> local/var/lib 
>> local/var/lib/sage 
>> local/var/lib/sage/installed 
>>
>
>
> No François, there is no J_Honrubia user on this machine and neither is a 
> symlink on this subdirectories you suggested. Is there a target in the 
> makefile to clean this mess :-)
>  
>
>>
>> François 
>>
>> > On 7/07/2017, at 05:35, jhonrubia6  wrote: 
>> > 
>> > this is the complete log, somehow it is trying to create a S 
>> > /Library/Developer/CommandLineTools/usr/bin/make build/make/Makefile 
>> > 
>> > make[1]: `build/make/Makefile' is up to date. 
>> > 
>> > build/bin/sage-logger \ 
>> > 
>> > "cd build/make && ./install 'all'" logs/install.log 
>> > 
>> > *** ALL ENVIRONMENT VARIABLES BEFORE BUILD: *** 
>> > 
>> > 
>> Apple_PubSub_Socket_Render=/private/tmp/com.apple.launchd.wvo7zYEsAE/Render 
>> > 
>> > HOME=/Users/t143730 
>> > 
>> > LANG=es_ES.UTF-8 
>> > 
>> > LOGNAME=t143730 
>> > 
>> > MAKE=make 
>> > 
>> > MAKEFLAGS= V=1 
>> > 
>> > MAKELEVEL=1 
>> > 
>> > MFLAGS= 
>> > 
>> > 
>> PATH=/Users/t143730/sage/build/bin:/Users/t143730/sage/src/bin:/Users/t143730/sage/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/Library/TeX/texbin
>>  
>>
>> > 
>> > PWD=/Users/t143730/sage/build/make 
>> > 
>> > PYTHONPATH=/Users/t143730/sage/local 
>> > 
>> > SAGE_EXTCODE=/Users/t143730/sage/local/share/sage/ext 
>> > 
>> > SAGE_LOCAL=/Users/t143730/sage/local 
>> > 
>> > SAGE_LOGS=/Users/t143730/sage/logs/pkgs 
>> > 
>> > 
>> SAGE_ORIG_PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/Library/TeX/texbin
>>  
>>
>> > 
>> > SAGE_ORIG_PATH_SET=True 
>> > 
>> > SAGE_ROOT=/Users/t143730/sage 
>> > 
>> > SAGE_SHARE=/Users/t143730/sage/local/share 
>> > 
>> > SAGE_SPKG_INST=/Users/t143730/sage/local/var/lib/sage/installed 
>> > 
>> > SAGE_SRC=/Users/t143730/sage/src 
>> > 
>> > SAGE_VERSION=8.0.beta4 
>> > 
>> > SECURITYSESSIONID=186a7 
>> > 
>> > SHELL=/bin/bash 
>> > 
>> > SHLVL=4 
>> > 
>> > SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.aggQsC0Rbq/Listeners 
>> > 
>> > TERM=xterm-256color 
>> > 
>> > TERM_PROGRAM=Apple_Terminal 
>> > 
>> > TERM_PROGRAM_VERSION=361.1 
>> > 
>> > TERM_SESSION_ID=BA2F8976-A25B-4038-8F51-F0CCF658AD18 
>> > 
>> > TMPDIR=/var/folders/jz/2g9tqjks4yz7b24v_z7qnjscgn/T/ 
>> > 
>> > USER=t143730 
>> > 
>> > XPC_FLAGS=0x0 
>> > 
>> > XPC_SERVICE_NAME=0 
>> > 
>> > _=/usr/bin/env 
>> > 
>> > __CF_USER_TEXT_ENCODING=0x1F5:0x0:0x8 
>> > 
>> > *** 
>> > 
>> > make base 
>> > 
>> > make[2]: Nothing to be done for `base'. 
>> > 
>> > env SAGE_BUILD_TOOLCHAIN=yes make toolchain 
>> > 
>> > make[2]: Nothing to be done for `toolchain'. 
>> > 
>> > make toolchain-deps 
>> > 
>> > make /Users/t143730/sage/local/var/lib/sage/installed/zlib-1.2.8.p0 
>> > 
>> > make[3]: 
>> `/Users/t143730/sage/local/var/lib/sage/installed/zlib-1.2.8.p0' is up to 
>> date. 
>> > 
>> > make /Users/t143730/sage/local/var/lib/sage/installed/mpir-2.7.2.p0 
>> > 
>> > make[3]: 
>> `/Users/t143730/sage/local/var/lib/sage/installed/mpir-2.7.2.p0' is up to 
>> date. 
>> > 
>> > make /Users/t143730/sage/local/var/lib/sage/installed/mpfr-3.1.5 
>> > 
>> > make[3]: `/Users/t143730/sage/local/var/lib/sage/installed/mpfr-3.1.5' 
>> is up to date. 
>> > 
>> > make /Users/t143730/sage/local/var/lib/sage/installed/mpc-1.0.3.p0 
>> > 
>> > make[3]: 
>> `/Users/t143730/sage/local/var/lib/sage/installed/mpc-1.0.3.p0' is up to 
>> date. 
>> > 
>> > make doc all-sage 
>> > 
>> > sage-logger -p 'sage-spkg ncurses-6.0' 
>> '/Users/t143730/sage/logs/pkgs/ncurses-6.0.log' 
>> > 
>> > 

Re: [sage-devel] Re: Error rebuilding Sage (ncurses)

[jhonrubia6]

El jueves, 6 de julio de 2017, 20:52:02 (UTC+2), François Bissey escribió:
>
> The OS X file system only fake case sensitivity, so “Sage” and “sage” 
> are actually the same folder. 
>
> Now it is very suspicious. It fails because permission is denied on 
> > /Users/J_Honrubia/Sage/sage/local/var/lib/sage/installed 
> Yet you are t143730 and you are building from /Users/t143730/sage/ 
> so do you have symlinks to another user account for which you 
> don’t have permission with this user? 
> the symlink could be 
> local 
> local/var 
> local/var/lib 
> local/var/lib/sage 
> local/var/lib/sage/installed 
>


No François, there is no J_Honrubia user on this machine and neither is a 
symlink on this subdirectories you suggested. Is there a target in the 
makefile to clean this mess :-)
 

>
> François 
>
> > On 7/07/2017, at 05:35, jhonrubia6  
> wrote: 
> > 
> > this is the complete log, somehow it is trying to create a S 
> > /Library/Developer/CommandLineTools/usr/bin/make build/make/Makefile 
> > 
> > make[1]: `build/make/Makefile' is up to date. 
> > 
> > build/bin/sage-logger \ 
> > 
> > "cd build/make && ./install 'all'" logs/install.log 
> > 
> > *** ALL ENVIRONMENT VARIABLES BEFORE BUILD: *** 
> > 
> > 
> Apple_PubSub_Socket_Render=/private/tmp/com.apple.launchd.wvo7zYEsAE/Render 
> > 
> > HOME=/Users/t143730 
> > 
> > LANG=es_ES.UTF-8 
> > 
> > LOGNAME=t143730 
> > 
> > MAKE=make 
> > 
> > MAKEFLAGS= V=1 
> > 
> > MAKELEVEL=1 
> > 
> > MFLAGS= 
> > 
> > 
> PATH=/Users/t143730/sage/build/bin:/Users/t143730/sage/src/bin:/Users/t143730/sage/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/Library/TeX/texbin
>  
>
> > 
> > PWD=/Users/t143730/sage/build/make 
> > 
> > PYTHONPATH=/Users/t143730/sage/local 
> > 
> > SAGE_EXTCODE=/Users/t143730/sage/local/share/sage/ext 
> > 
> > SAGE_LOCAL=/Users/t143730/sage/local 
> > 
> > SAGE_LOGS=/Users/t143730/sage/logs/pkgs 
> > 
> > 
> SAGE_ORIG_PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/Library/TeX/texbin
>  
>
> > 
> > SAGE_ORIG_PATH_SET=True 
> > 
> > SAGE_ROOT=/Users/t143730/sage 
> > 
> > SAGE_SHARE=/Users/t143730/sage/local/share 
> > 
> > SAGE_SPKG_INST=/Users/t143730/sage/local/var/lib/sage/installed 
> > 
> > SAGE_SRC=/Users/t143730/sage/src 
> > 
> > SAGE_VERSION=8.0.beta4 
> > 
> > SECURITYSESSIONID=186a7 
> > 
> > SHELL=/bin/bash 
> > 
> > SHLVL=4 
> > 
> > SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.aggQsC0Rbq/Listeners 
> > 
> > TERM=xterm-256color 
> > 
> > TERM_PROGRAM=Apple_Terminal 
> > 
> > TERM_PROGRAM_VERSION=361.1 
> > 
> > TERM_SESSION_ID=BA2F8976-A25B-4038-8F51-F0CCF658AD18 
> > 
> > TMPDIR=/var/folders/jz/2g9tqjks4yz7b24v_z7qnjscgn/T/ 
> > 
> > USER=t143730 
> > 
> > XPC_FLAGS=0x0 
> > 
> > XPC_SERVICE_NAME=0 
> > 
> > _=/usr/bin/env 
> > 
> > __CF_USER_TEXT_ENCODING=0x1F5:0x0:0x8 
> > 
> > *** 
> > 
> > make base 
> > 
> > make[2]: Nothing to be done for `base'. 
> > 
> > env SAGE_BUILD_TOOLCHAIN=yes make toolchain 
> > 
> > make[2]: Nothing to be done for `toolchain'. 
> > 
> > make toolchain-deps 
> > 
> > make /Users/t143730/sage/local/var/lib/sage/installed/zlib-1.2.8.p0 
> > 
> > make[3]: 
> `/Users/t143730/sage/local/var/lib/sage/installed/zlib-1.2.8.p0' is up to 
> date. 
> > 
> > make /Users/t143730/sage/local/var/lib/sage/installed/mpir-2.7.2.p0 
> > 
> > make[3]: 
> `/Users/t143730/sage/local/var/lib/sage/installed/mpir-2.7.2.p0' is up to 
> date. 
> > 
> > make /Users/t143730/sage/local/var/lib/sage/installed/mpfr-3.1.5 
> > 
> > make[3]: `/Users/t143730/sage/local/var/lib/sage/installed/mpfr-3.1.5' 
> is up to date. 
> > 
> > make /Users/t143730/sage/local/var/lib/sage/installed/mpc-1.0.3.p0 
> > 
> > make[3]: `/Users/t143730/sage/local/var/lib/sage/installed/mpc-1.0.3.p0' 
> is up to date. 
> > 
> > make doc all-sage 
> > 
> > sage-logger -p 'sage-spkg ncurses-6.0' 
> '/Users/t143730/sage/logs/pkgs/ncurses-6.0.log' 
> > 
> > [ncurses-6.0] mkdir: 
> /Users/J_Honrubia/Sage/sage/local/var/lib/sage/installed: Permission denied 
> > 
> > [ncurses-6.0] 
>  
> > 
> > [ncurses-6.0] Error creating directory 
> /Users/J_Honrubia/Sage/sage/local/var/lib/sage/installed 
> > 
> > [ncurses-6.0] 
>  
> > 
> > [ncurses-6.0] Please email sage-devel (
> http://groups.google.com/group/sage-devel) 
> > 
> > [ncurses-6.0] explaining the problem and including the log file 
> > 
> > [ncurses-6.0]   /Users/t143730/sage/logs/pkgs/.log 
> > 
> > [ncurses-6.0] Describe your computer, operating system, etc. 
> > 
> > [ncurses-6.0] 
>  
> > 
> > make[2]: *** 
> [/Users/t143730/sage/local/var/lib/sage/installed/ncurses-6.0] Error 1 
> > 
> > make[1]: *** [all] Error 2 
> > 
> > 
> > 
> > real0m0.376s 
> > 
> > user0m0.234s 

Re: [sage-devel] Re: Error rebuilding Sage (ncurses)

[François Bissey]

The OS X file system only fake case sensitivity, so “Sage” and “sage”
are actually the same folder.

Now it is very suspicious. It fails because permission is denied on
> /Users/J_Honrubia/Sage/sage/local/var/lib/sage/installed
Yet you are t143730 and you are building from /Users/t143730/sage/
so do you have symlinks to another user account for which you
don’t have permission with this user?
the symlink could be
local
local/var
local/var/lib
local/var/lib/sage
local/var/lib/sage/installed

François

> On 7/07/2017, at 05:35, jhonrubia6  wrote:
> 
> this is the complete log, somehow it is trying to create a S
> /Library/Developer/CommandLineTools/usr/bin/make build/make/Makefile
> 
> make[1]: `build/make/Makefile' is up to date.
> 
> build/bin/sage-logger \
> 
>   "cd build/make && ./install 'all'" logs/install.log
> 
> *** ALL ENVIRONMENT VARIABLES BEFORE BUILD: ***
> 
> Apple_PubSub_Socket_Render=/private/tmp/com.apple.launchd.wvo7zYEsAE/Render
> 
> HOME=/Users/t143730
> 
> LANG=es_ES.UTF-8
> 
> LOGNAME=t143730
> 
> MAKE=make
> 
> MAKEFLAGS= V=1
> 
> MAKELEVEL=1
> 
> MFLAGS=
> 
> PATH=/Users/t143730/sage/build/bin:/Users/t143730/sage/src/bin:/Users/t143730/sage/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/Library/TeX/texbin
> 
> PWD=/Users/t143730/sage/build/make
> 
> PYTHONPATH=/Users/t143730/sage/local
> 
> SAGE_EXTCODE=/Users/t143730/sage/local/share/sage/ext
> 
> SAGE_LOCAL=/Users/t143730/sage/local
> 
> SAGE_LOGS=/Users/t143730/sage/logs/pkgs
> 
> SAGE_ORIG_PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/Library/TeX/texbin
> 
> SAGE_ORIG_PATH_SET=True
> 
> SAGE_ROOT=/Users/t143730/sage
> 
> SAGE_SHARE=/Users/t143730/sage/local/share
> 
> SAGE_SPKG_INST=/Users/t143730/sage/local/var/lib/sage/installed
> 
> SAGE_SRC=/Users/t143730/sage/src
> 
> SAGE_VERSION=8.0.beta4
> 
> SECURITYSESSIONID=186a7
> 
> SHELL=/bin/bash
> 
> SHLVL=4
> 
> SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.aggQsC0Rbq/Listeners
> 
> TERM=xterm-256color
> 
> TERM_PROGRAM=Apple_Terminal
> 
> TERM_PROGRAM_VERSION=361.1
> 
> TERM_SESSION_ID=BA2F8976-A25B-4038-8F51-F0CCF658AD18
> 
> TMPDIR=/var/folders/jz/2g9tqjks4yz7b24v_z7qnjscgn/T/
> 
> USER=t143730
> 
> XPC_FLAGS=0x0
> 
> XPC_SERVICE_NAME=0
> 
> _=/usr/bin/env
> 
> __CF_USER_TEXT_ENCODING=0x1F5:0x0:0x8
> 
> ***
> 
> make base
> 
> make[2]: Nothing to be done for `base'.
> 
> env SAGE_BUILD_TOOLCHAIN=yes make toolchain
> 
> make[2]: Nothing to be done for `toolchain'.
> 
> make toolchain-deps
> 
> make /Users/t143730/sage/local/var/lib/sage/installed/zlib-1.2.8.p0
> 
> make[3]: `/Users/t143730/sage/local/var/lib/sage/installed/zlib-1.2.8.p0' is 
> up to date.
> 
> make /Users/t143730/sage/local/var/lib/sage/installed/mpir-2.7.2.p0
> 
> make[3]: `/Users/t143730/sage/local/var/lib/sage/installed/mpir-2.7.2.p0' is 
> up to date.
> 
> make /Users/t143730/sage/local/var/lib/sage/installed/mpfr-3.1.5
> 
> make[3]: `/Users/t143730/sage/local/var/lib/sage/installed/mpfr-3.1.5' is up 
> to date.
> 
> make /Users/t143730/sage/local/var/lib/sage/installed/mpc-1.0.3.p0
> 
> make[3]: `/Users/t143730/sage/local/var/lib/sage/installed/mpc-1.0.3.p0' is 
> up to date.
> 
> make doc all-sage
> 
> sage-logger -p 'sage-spkg ncurses-6.0' 
> '/Users/t143730/sage/logs/pkgs/ncurses-6.0.log'
> 
> [ncurses-6.0] mkdir: 
> /Users/J_Honrubia/Sage/sage/local/var/lib/sage/installed: Permission denied
> 
> [ncurses-6.0] 
> 
> 
> [ncurses-6.0] Error creating directory 
> /Users/J_Honrubia/Sage/sage/local/var/lib/sage/installed
> 
> [ncurses-6.0] 
> 
> 
> [ncurses-6.0] Please email sage-devel 
> (http://groups.google.com/group/sage-devel)
> 
> [ncurses-6.0] explaining the problem and including the log file
> 
> [ncurses-6.0]   /Users/t143730/sage/logs/pkgs/.log
> 
> [ncurses-6.0] Describe your computer, operating system, etc.
> 
> [ncurses-6.0] 
> 
> 
> make[2]: *** [/Users/t143730/sage/local/var/lib/sage/installed/ncurses-6.0] 
> Error 1
> 
> make[1]: *** [all] Error 2
> 
> 
> 
> real  0m0.376s
> 
> user  0m0.234s
> 
> sys   0m0.113s
> 
> ***
> 
> Error building Sage.
> 
> 
> 
> The following package(s) may have failed to build (not necessarily
> 
> during this run of 'make all'):
> 
> 
> 
> * package: ncurses-6.0
> 
>   log file: /Users/t143730/sage/logs/pkgs/ncurses-6.0.log
> 
>   build directory: /Users/t143730/sage/local/var/tmp/sage/build/ncurses-6.0
> 
> 
> 
> The build directory may contain configuration files and other potentially
> 
> helpful information. WARNING: if you now run 'make' again, the build
> 
> directory will, by default, be deleted. Set the environment variable
> 
> SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this.
> 
> 
> 

[sage-devel] Re: Error rebuilding Sage (ncurses)

[jhonrubia6]

this is the complete log, somehow it is trying to create a S

/Library/Developer/CommandLineTools/usr/bin/make build/make/Makefile

make[1]: `build/make/Makefile' is up to date.

build/bin/sage-logger \

"cd build/make && ./install 'all'" logs/install.log

*** ALL ENVIRONMENT VARIABLES BEFORE BUILD: ***

Apple_PubSub_Socket_Render=/private/tmp/com.apple.launchd.wvo7zYEsAE/Render

HOME=/Users/t143730

LANG=es_ES.UTF-8

LOGNAME=t143730

MAKE=make

MAKEFLAGS= V=1

MAKELEVEL=1

MFLAGS=

PATH=/Users/t143730/sage/build/bin:/Users/t143730/sage/src/bin:/Users/t143730/sage/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/Library/TeX/texbin

PWD=/Users/t143730/sage/build/make

PYTHONPATH=/Users/t143730/sage/local

SAGE_EXTCODE=/Users/t143730/sage/local/share/sage/ext

SAGE_LOCAL=/Users/t143730/sage/local

SAGE_LOGS=/Users/t143730/sage/logs/pkgs

SAGE_ORIG_PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/Library/TeX/texbin

SAGE_ORIG_PATH_SET=True

SAGE_ROOT=/Users/t143730/sage

SAGE_SHARE=/Users/t143730/sage/local/share

SAGE_SPKG_INST=/Users/t143730/sage/local/var/lib/sage/installed

SAGE_SRC=/Users/t143730/sage/src

SAGE_VERSION=8.0.beta4

SECURITYSESSIONID=186a7

SHELL=/bin/bash

SHLVL=4

SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.aggQsC0Rbq/Listeners

TERM=xterm-256color

TERM_PROGRAM=Apple_Terminal

TERM_PROGRAM_VERSION=361.1

TERM_SESSION_ID=BA2F8976-A25B-4038-8F51-F0CCF658AD18

TMPDIR=/var/folders/jz/2g9tqjks4yz7b24v_z7qnjscgn/T/

USER=t143730

XPC_FLAGS=0x0

XPC_SERVICE_NAME=0

_=/usr/bin/env

__CF_USER_TEXT_ENCODING=0x1F5:0x0:0x8

***

make base

make[2]: Nothing to be done for `base'.

env SAGE_BUILD_TOOLCHAIN=yes make toolchain

make[2]: Nothing to be done for `toolchain'.

make toolchain-deps

make /Users/t143730/sage/local/var/lib/sage/installed/zlib-1.2.8.p0

make[3]: `/Users/t143730/sage/local/var/lib/sage/installed/zlib-1.2.8.p0' 
is up to date.

make /Users/t143730/sage/local/var/lib/sage/installed/mpir-2.7.2.p0

make[3]: `/Users/t143730/sage/local/var/lib/sage/installed/mpir-2.7.2.p0' 
is up to date.

make /Users/t143730/sage/local/var/lib/sage/installed/mpfr-3.1.5

make[3]: `/Users/t143730/sage/local/var/lib/sage/installed/mpfr-3.1.5' is 
up to date.

make /Users/t143730/sage/local/var/lib/sage/installed/mpc-1.0.3.p0

make[3]: `/Users/t143730/sage/local/var/lib/sage/installed/mpc-1.0.3.p0' is 
up to date.

make doc all-sage

sage-logger -p 'sage-spkg ncurses-6.0' 
'/Users/t143730/sage/logs/pkgs/ncurses-6.0.log'

[ncurses-6.0] mkdir: 
/Users/J_Honrubia/Sage/sage/local/var/lib/sage/installed: Permission denied

[ncurses-6.0] 


[ncurses-6.0] Error creating directory 
/Users/J_Honrubia/Sage/sage/local/var/lib/sage/installed

[ncurses-6.0] 


[ncurses-6.0] Please email sage-devel 
(http://groups.google.com/group/sage-devel)

[ncurses-6.0] explaining the problem and including the log file

[ncurses-6.0]   /Users/t143730/sage/logs/pkgs/.log

[ncurses-6.0] Describe your computer, operating system, etc.

[ncurses-6.0] 


make[2]: *** [/Users/t143730/sage/local/var/lib/sage/installed/ncurses-6.0] 
Error 1

make[1]: *** [all] Error 2


real 0m0.376s

user 0m0.234s

sys 0m0.113s

***

Error building Sage.


The following package(s) may have failed to build (not necessarily

during this run of 'make all'):


* package: ncurses-6.0

  log file: /Users/t143730/sage/logs/pkgs/ncurses-6.0.log

  build directory: /Users/t143730/sage/local/var/tmp/sage/build/ncurses-6.0


The build directory may contain configuration files and other potentially

helpful information. WARNING: if you now run 'make' again, the build

directory will, by default, be deleted. Set the environment variable

SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this.


make: *** [all] Error 1

And under /Users/t143730 there is no subdirectory named sage

iMac-de-Javier:Sage t143730$ pwd

/Users/t143730/Sage

iMac-de-Javier:Sage t143730$ ls -l

total 888

-rw-r--r--1 t143730  staff   70187  9 ene 15:36 COPYING.txt

-rw-r--r--1 t143730  staff4593  4 jul 21:31 Makefile

-rw-r--r--1 t143730  staff   15204  4 jul 21:31 README.md

-rw-r--r--1 t143730  staff  53  4 jul 21:31 VERSION.txt

-rwxr-xr-x1 t143730  staff4022  4 jul 21:31 bootstrap

drwxr-xr-x   11 t143730  staff 374  9 ene 15:36 build

drwxr-xr-x7 t143730  staff 238  4 jul 21:52 config

lrwxr-xr-x1 t143730  staff  20  6 jul 19:31 config.log -> 
logs/pkgs/config.log

-rwxr-xr-x1 t143730  staff   31562  6 jul 19:31 config.status

-rwxr-xr-x1 t143730  staff  263914  4 jul 21:52 configure

-rw-r--r--1 t143730  staff   36049  4 jul 21:31 configure.ac

drwxr-xr-x   16 t143730  staff 544 18 abr  2016 

Re: [sage-devel] Re: error rebuilding sage

[Travis Scrimshaw]

 

> git fetch trac tiket_brunch
>
git merge FETCH_HEAD
>

This could also just be done by

git pull trac tiket_brunch

Best,
Travis

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Re: [sage-devel] Re: error rebuilding sage

[Jeroen Demeyer]

On 2016-02-06 10:28, jhonrubia6 wrote:

So, if I understand you correctly, say I have sage 7.0 on my machine and
try to review some old ticket, do you recommend me to merge the ticket
branch with my copy


I don't know what you mean with "my copy". Anyway, merging with a more 
recent version of Sage (preferably the latest beta) is indeed a good 
thing to do.


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Re: [sage-devel] Re: error rebuilding sage

[jhonrubia6]

So, if I understand you correctly, say I have sage 7.0 on my machine and 
try to review some old ticket, do you recommend me to merge the ticket 
branch with my copy 
git merge tiket_branch
and then review it?
If the ticket does not compile ok for whatever reason, there will be no way 
to get rid of it on my copy or am I wrong?


El jueves, 4 de febrero de 2016, 21:49:36 (UTC+1), Volker Braun escribió:
>
> Just to point out the obvious: If you check out #18408 then you get 
> Sage-6.8.beta7
>
> You should merge in the latest Sage if you want to review that ticket; Its 
> likely that there are merge conflicts anyways which need to be resolved 
> first.
>
> On Thursday, February 4, 2016 at 7:52:20 PM UTC+1, Jeroen Demeyer wrote:
>>
>> On 2016-02-04 19:32, jhonrubia6 wrote: 
>> > I passed that point and now fails building ecm,... 
>> > I do not understand what I am making wrong. I had a working 
>> installation 
>> > on 7.0, then after checking out a ticket to review (#18408)I tried to 
>> > build again and I'm having a lot of problems to get the installation 
>> > working again 
>>
>> This should be fixed by 
>> http://trac.sagemath.org/ticket/19233 
>>
>> Which version of Sage is that? 
>>
>

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Re: [sage-devel] Re: error rebuilding sage

[Dima Pasechnik]

On Saturday, February 6, 2016 at 9:28:36 AM UTC, jhonrubia6 wrote:
>
> So, if I understand you correctly, say I have sage 7.0 on my machine and 
> try to review some old ticket, do you recommend me to merge the ticket 
> branch with my copy 
> git merge tiket_branch
> and then review it?
> If the ticket does not compile ok for whatever reason, there will be no 
> way to get rid of it on my copy or am I wrong?
>

# this is how to do this with plain git:
 
git checkout -b tiket_brunch develop
# now we are on a copy of develop, called tiket_brunch (or whatever)
git fetch trac tiket_brunch
git merge FETCH_HEAD
# now we have merged branch from trac into tiket_brunch
# now do make test stuff, etc
git checkout develop
make
# now we are back to our develop
# (you can now remove your local tiket_brunch using appropriate git 
commands)


 

>
>
> El jueves, 4 de febrero de 2016, 21:49:36 (UTC+1), Volker Braun escribió:
>>
>> Just to point out the obvious: If you check out #18408 then you get 
>> Sage-6.8.beta7
>>
>> You should merge in the latest Sage if you want to review that ticket; 
>> Its likely that there are merge conflicts anyways which need to be resolved 
>> first.
>>
>> On Thursday, February 4, 2016 at 7:52:20 PM UTC+1, Jeroen Demeyer wrote:
>>>
>>> On 2016-02-04 19:32, jhonrubia6 wrote: 
>>> > I passed that point and now fails building ecm,... 
>>> > I do not understand what I am making wrong. I had a working 
>>> installation 
>>> > on 7.0, then after checking out a ticket to review (#18408)I tried to 
>>> > build again and I'm having a lot of problems to get the installation 
>>> > working again 
>>>
>>> This should be fixed by 
>>> http://trac.sagemath.org/ticket/19233 
>>>
>>> Which version of Sage is that? 
>>>
>>

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Re: [sage-devel] Re: error rebuilding sage

[jhonrubia6]

I meant my local copy of the source code. 
Ok. I will proceed as you say, thank you all

El sábado, 6 de febrero de 2016, 10:32:56 (UTC+1), Jeroen Demeyer escribió:
>
> On 2016-02-06 10:28, jhonrubia6 wrote: 
> > So, if I understand you correctly, say I have sage 7.0 on my machine and 
> > try to review some old ticket, do you recommend me to merge the ticket 
> > branch with my copy 
>
> I don't know what you mean with "my copy". Anyway, merging with a more 
> recent version of Sage (preferably the latest beta) is indeed a good 
> thing to do. 
>
>

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Re: [sage-devel] Re: error rebuilding sage

[Jeroen Demeyer]

On 2016-02-04 22:00, jhonrubia6 wrote:

How do I know the version of a given ticket which needs review?


Checkout the branch and run "cat VERSION.txt"

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Re: [sage-devel] Re: error rebuilding sage

[Clemens Heuberger]

On 2016-02-04 23:25, Dima Pasechnik wrote:
> 
> 
> On Thursday, 4 February 2016 21:00:03 UTC, jhonrubia6 wrote:
> 
> How do I know the version of a given ticket which needs review?
> 
> 
> typically for reviewing you don't even want to know, just merge over the 
> current
> develop branch.
> (or use git trac)

I tend to review tickets in their own sage version (I have a bunch of versions
checked out and compiled) because then adding a reviewer commit is easier.

I have a look at the results of the patchbots, if they can compile and doctest
the ticket on the newest sage version, then I do not check the same thing on my
machine.

> 
> anyhow, if you don't want to check out the branch, 
> on the ticket click on "Commits" next to "branch", and then on "Summary"
> e.g. for this ticket you will come to
> http://git.sagemath.org/sage.git/?h=a9a45bf4314373cda000c34cf8296b457acb5fde
> Then in "Age" section you will see: 
> Updated Sage version to 6.8.beta7

$ git trac fetch 18408
remote branch: public/18408

Von git://trac.sagemath.org/sage
 * branchpublic/18408 -> FETCH_HEAD

$ git describe FETCH_HEAD
6.8.beta7-3-ga9a45bf

so 18408 is 3 commits ahead of 6.8.beta7.

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Re: [sage-devel] Re: error rebuilding sage

[Dima Pasechnik]

On Thursday, 4 February 2016 21:00:03 UTC, jhonrubia6 wrote:
>
> Ok, that explains it (I keep learning, even the obvious). So if I 
> understand correctly I should have merged first, before rebuilding the 
> source. Now, it seems there is no  way back I guess, other than getting a 
> new copy of the source code.
> How do I know the version of a given ticket which needs review?
>

typically for reviewing you don't even want to know, just merge over the 
current develop branch.
(or use git trac)

anyhow, if you don't want to check out the branch, 
on the ticket click on "Commits" next to "branch", and then on "Summary"
e.g. for this ticket you will come to
http://git.sagemath.org/sage.git/?h=a9a45bf4314373cda000c34cf8296b457acb5fde
Then in "Age" section you will see: 
Updated Sage version to 6.8.beta7

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Re: [sage-devel] Re: error rebuilding sage

[jhonrubia6]

Ok, that explains it (I keep learning, even the obvious). So if I 
understand correctly I should have merged first, before rebuilding the 
source. Now, it seems there is no  way back I guess, other than getting a 
new copy of the source code.
How do I know the version of a given ticket which needs review?


El jueves, 4 de febrero de 2016, 21:49:36 (UTC+1), Volker Braun escribió:
>
> Just to point out the obvious: If you check out #18408 then you get 
> Sage-6.8.beta7
>
> You should merge in the latest Sage if you want to review that ticket; Its 
> likely that there are merge conflicts anyways which need to be resolved 
> first.
>
> On Thursday, February 4, 2016 at 7:52:20 PM UTC+1, Jeroen Demeyer wrote:
>>
>> On 2016-02-04 19:32, jhonrubia6 wrote: 
>> > I passed that point and now fails building ecm,... 
>> > I do not understand what I am making wrong. I had a working 
>> installation 
>> > on 7.0, then after checking out a ticket to review (#18408)I tried to 
>> > build again and I'm having a lot of problems to get the installation 
>> > working again 
>>
>> This should be fixed by 
>> http://trac.sagemath.org/ticket/19233 
>>
>> Which version of Sage is that? 
>>
>

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[sage-devel] Re: error rebuilding sage

[jhonrubia6]

... and the new error  (on make distclean && make) is 

/Users/J_Honrubia/Sage/sage-6.10/sage/build/pipestatus "sage-spkg -f 
setuptools-12.4 2>&1" "tee -a 
/Users/J_Honrubia/Sage/sage-6.10/sage/logs/pkgs/setuptools-12.4.log"

/Users/J_Honrubia/Sage/sage-6.10/sage/src/bin/sage-env: line 434: 
/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/R/share/Makevars.site: No 
such file or directory

Found local metadata for setuptools-12.4

Attempting to download package setuptools-12.4.tar.gz from mirrors

Downloading the Sage mirror list

Traceback (most recent call last):

  File "/Users/J_Honrubia/Sage/sage-6.10/sage/src/bin/sage-download-file", 
line 457, in 

tarball.download()

  File "/Users/J_Honrubia/Sage/sage-6.10/sage/src/bin/sage-download-file", 
line 392, in download

for mirror in MirrorList():

  File "/Users/J_Honrubia/Sage/sage-6.10/sage/src/bin/sage-download-file", 
line 152, in __init__

with contextlib.closing(urllib.urlopen(self.URL)) as f:

  File "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/urllib.py", 
line 87, in urlopen

return opener.open(url)

  File "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/urllib.py", 
line 213, in open

return getattr(self, name)(url)

  File "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/urllib.py", 
line 350, in open_http

h.endheaders(data)

  File "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/httplib.py", 
line 997, in endheaders

self._send_output(message_body)

  File "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/httplib.py", 
line 850, in _send_output

self.send(msg)

  File "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/httplib.py", 
line 812, in send

self.connect()

  File "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/httplib.py", 
line 793, in connect

self.timeout, self.source_address)

  File "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/socket.py", 
line 555, in create_connection

for res in getaddrinfo(host, port, 0, SOCK_STREAM):

IOError: [Errno socket error] [Errno 8] nodename nor servname provided, or 
not known

make[2]: *** 
[/Users/J_Honrubia/Sage/sage-6.10/sage/local/var/lib/sage/installed/setuptools-12.4]
 
Error 1

make[1]: *** [all] Error 2


real 729m8.876s

user 123m22.857s

sys 17m48.141s

***

Error building Sage.


The following package(s) may have failed to build:


The build directory may contain configuration files and other potentially

helpful information. WARNING: if you now run 'make' again, the build

directory will, by default, be deleted. Set the environment variable

SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this.


make: *** [all] Error 1

O

El miércoles, 3 de febrero de 2016, 18:41:43 (UTC+1), Volker Braun escribió:
>
>
>
> On Wednesday, February 3, 2016 at 6:25:46 PM UTC+1, jhonrubia6 wrote:
>>
>> after make dist-clean && make I've got an error 
>>
>
> its "make distclean" 
>

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[sage-devel] Re: error rebuilding sage

[jhonrubia6]

As the compilation dos through the night, maybe there was some internet 
downtime that I am not aware of. I will try again and keep track of the 
router log, thank you for your help

El jueves, 4 de febrero de 2016, 17:36:46 (UTC+1), Dima Pasechnik escribió:
>
> did the internet connection from the machine die during the build, or 
> perhaps you are behind some big bad firewall?
>
> On Thursday, 4 February 2016 15:21:59 UTC, jhonrubia6 wrote:
>>
>> ... and the new error  (on make distclean && make) is 
>>
>> /Users/J_Honrubia/Sage/sage-6.10/sage/build/pipestatus "sage-spkg -f 
>> setuptools-12.4 2>&1" "tee -a 
>> /Users/J_Honrubia/Sage/sage-6.10/sage/logs/pkgs/setuptools-12.4.log"
>>
>> /Users/J_Honrubia/Sage/sage-6.10/sage/src/bin/sage-env: line 434: 
>> /Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/R/share/Makevars.site: No 
>> such file or directory
>>
>> Found local metadata for setuptools-12.4
>>
>> Attempting to download package setuptools-12.4.tar.gz from mirrors
>>
>> Downloading the Sage mirror list
>>
>> Traceback (most recent call last):
>>
>>   File 
>> "/Users/J_Honrubia/Sage/sage-6.10/sage/src/bin/sage-download-file", line 
>> 457, in 
>>
>> tarball.download()
>>
>>   File 
>> "/Users/J_Honrubia/Sage/sage-6.10/sage/src/bin/sage-download-file", line 
>> 392, in download
>>
>> for mirror in MirrorList():
>>
>>   File 
>> "/Users/J_Honrubia/Sage/sage-6.10/sage/src/bin/sage-download-file", line 
>> 152, in __init__
>>
>> with contextlib.closing(urllib.urlopen(self.URL)) as f:
>>
>>   File 
>> "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/urllib.py", line 
>> 87, in urlopen
>>
>> return opener.open(url)
>>
>>   File 
>> "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/urllib.py", line 
>> 213, in open
>>
>> return getattr(self, name)(url)
>>
>>   File 
>> "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/urllib.py", line 
>> 350, in open_http
>>
>> h.endheaders(data)
>>
>>   File 
>> "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/httplib.py", line 
>> 997, in endheaders
>>
>> self._send_output(message_body)
>>
>>   File 
>> "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/httplib.py", line 
>> 850, in _send_output
>>
>> self.send(msg)
>>
>>   File 
>> "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/httplib.py", line 
>> 812, in send
>>
>> self.connect()
>>
>>   File 
>> "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/httplib.py", line 
>> 793, in connect
>>
>> self.timeout, self.source_address)
>>
>>   File 
>> "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/socket.py", line 
>> 555, in create_connection
>>
>> for res in getaddrinfo(host, port, 0, SOCK_STREAM):
>>
>> IOError: [Errno socket error] [Errno 8] nodename nor servname provided, 
>> or not known
>>
>> make[2]: *** 
>> [/Users/J_Honrubia/Sage/sage-6.10/sage/local/var/lib/sage/installed/setuptools-12.4]
>>  
>> Error 1
>>
>> make[1]: *** [all] Error 2
>>
>>
>> real 729m8.876s
>>
>> user 123m22.857s
>>
>> sys 17m48.141s
>>
>> ***
>>
>> Error building Sage.
>>
>>
>> The following package(s) may have failed to build:
>>
>>
>> The build directory may contain configuration files and other potentially
>>
>> helpful information. WARNING: if you now run 'make' again, the build
>>
>> directory will, by default, be deleted. Set the environment variable
>>
>> SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this.
>>
>>
>> make: *** [all] Error 1
>>
>> O
>>
>> El miércoles, 3 de febrero de 2016, 18:41:43 (UTC+1), Volker Braun 
>> escribió:
>>>
>>>
>>>
>>> On Wednesday, February 3, 2016 at 6:25:46 PM UTC+1, jhonrubia6 wrote:

 after make dist-clean && make I've got an error 

>>>
>>> its "make distclean" 
>>>
>>

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[sage-devel] Re: error rebuilding sage

[Dima Pasechnik]

did the internet connection from the machine die during the build, or 
perhaps you are behind some big bad firewall?

On Thursday, 4 February 2016 15:21:59 UTC, jhonrubia6 wrote:
>
> ... and the new error  (on make distclean && make) is 
>
> /Users/J_Honrubia/Sage/sage-6.10/sage/build/pipestatus "sage-spkg -f 
> setuptools-12.4 2>&1" "tee -a 
> /Users/J_Honrubia/Sage/sage-6.10/sage/logs/pkgs/setuptools-12.4.log"
>
> /Users/J_Honrubia/Sage/sage-6.10/sage/src/bin/sage-env: line 434: 
> /Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/R/share/Makevars.site: No 
> such file or directory
>
> Found local metadata for setuptools-12.4
>
> Attempting to download package setuptools-12.4.tar.gz from mirrors
>
> Downloading the Sage mirror list
>
> Traceback (most recent call last):
>
>   File "/Users/J_Honrubia/Sage/sage-6.10/sage/src/bin/sage-download-file", 
> line 457, in 
>
> tarball.download()
>
>   File "/Users/J_Honrubia/Sage/sage-6.10/sage/src/bin/sage-download-file", 
> line 392, in download
>
> for mirror in MirrorList():
>
>   File "/Users/J_Honrubia/Sage/sage-6.10/sage/src/bin/sage-download-file", 
> line 152, in __init__
>
> with contextlib.closing(urllib.urlopen(self.URL)) as f:
>
>   File "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/urllib.py", 
> line 87, in urlopen
>
> return opener.open(url)
>
>   File "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/urllib.py", 
> line 213, in open
>
> return getattr(self, name)(url)
>
>   File "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/urllib.py", 
> line 350, in open_http
>
> h.endheaders(data)
>
>   File 
> "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/httplib.py", line 
> 997, in endheaders
>
> self._send_output(message_body)
>
>   File 
> "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/httplib.py", line 
> 850, in _send_output
>
> self.send(msg)
>
>   File 
> "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/httplib.py", line 
> 812, in send
>
> self.connect()
>
>   File 
> "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/httplib.py", line 
> 793, in connect
>
> self.timeout, self.source_address)
>
>   File "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/socket.py", 
> line 555, in create_connection
>
> for res in getaddrinfo(host, port, 0, SOCK_STREAM):
>
> IOError: [Errno socket error] [Errno 8] nodename nor servname provided, or 
> not known
>
> make[2]: *** 
> [/Users/J_Honrubia/Sage/sage-6.10/sage/local/var/lib/sage/installed/setuptools-12.4]
>  
> Error 1
>
> make[1]: *** [all] Error 2
>
>
> real 729m8.876s
>
> user 123m22.857s
>
> sys 17m48.141s
>
> ***
>
> Error building Sage.
>
>
> The following package(s) may have failed to build:
>
>
> The build directory may contain configuration files and other potentially
>
> helpful information. WARNING: if you now run 'make' again, the build
>
> directory will, by default, be deleted. Set the environment variable
>
> SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this.
>
>
> make: *** [all] Error 1
>
> O
>
> El miércoles, 3 de febrero de 2016, 18:41:43 (UTC+1), Volker Braun 
> escribió:
>>
>>
>>
>> On Wednesday, February 3, 2016 at 6:25:46 PM UTC+1, jhonrubia6 wrote:
>>>
>>> after make dist-clean && make I've got an error 
>>>
>>
>> its "make distclean" 
>>
>

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Re: [sage-devel] Re: error rebuilding sage

[Jeroen Demeyer]

On 2016-02-04 19:32, jhonrubia6 wrote:

I passed that point and now fails building ecm,...
I do not understand what I am making wrong. I had a working installation
on 7.0, then after checking out a ticket to review (#18408)I tried to
build again and I'm having a lot of problems to get the installation
working again


This should be fixed by
http://trac.sagemath.org/ticket/19233

Which version of Sage is that?

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[sage-devel] Re: error rebuilding sage

[jhonrubia6]

I passed that point and now fails building ecm,... 
I do not understand what I am making wrong. I had a working installation on 
7.0, then after checking out a ticket to review (#18408)I tried to build 
again and I'm having a lot of problems to get the installation working again

Now building GMP-ECM...

make  all-recursive

Making all in x86_64

m4 -I../ -DOPERATION_mulredc1 `test -f mulredc1.asm || echo 
'./'`mulredc1.asm >mulredc1.s

/bin/sh ../libtool   --mode=compile gcc  -march=native -g -O3  -fPIC -c -o 
mulredc1.lo mulredc1.s

libtool: compile:  gcc -march=native -g -O3 -fPIC -c mulredc1.s -o 
mulredc1.o

m4 -I../ -DOPERATION_mulredc2 `test -f mulredc2.asm || echo 
'./'`mulredc2.asm >mulredc2.s

/bin/sh ../libtool   --mode=compile gcc  -march=native -g -O3  -fPIC -c -o 
mulredc2.lo mulredc2.s

libtool: compile:  gcc -march=native -g -O3 -fPIC -c mulredc2.s -o 
mulredc2.o

mulredc2.s:40:8: error: invalid alignment value

.align 64 # Opteron L1 code cache line is 64 bytes long

   ^

mulredc2.s:150:8: error: invalid alignment value

.align 32,,16

   ^

make[5]: *** [mulredc2.lo] Error 1

rm mulredc2.s mulredc1.s

make[4]: *** [all-recursive] Error 1

make[3]: *** [all] Error 2

Error building GMP-ECM.


real 0m20.742s

user 0m8.886s

sys 0m8.923s



Error installing package ecm-6.4.4



Please email sage-devel (http://groups.google.com/group/sage-devel)

explaining the problem and including the relevant part of the log file

  /Users/J_Honrubia/Sage/sage-6.10/sage/logs/pkgs/ecm-6.4.4.log

Describe your computer, operating system, etc.

If you want to try to fix the problem yourself, *don't* just cd to

/Users/J_Honrubia/Sage/sage-6.10/sage/local/var/tmp/sage/build/ecm-6.4.4 
and type 'make' or whatever is appropriate.

Instead, the following commands setup all environment variables

correctly and load a subshell for you to debug the error:

  (cd 
'/Users/J_Honrubia/Sage/sage-6.10/sage/local/var/tmp/sage/build/ecm-6.4.4' 
&& '/Users/J_Honrubia/Sage/sage-6.10/sage/sage' --sh)

When you are done debugging, you can type "exit" to leave the subshell.



make[2]: *** 
[/Users/J_Honrubia/Sage/sage-6.10/sage/local/var/lib/sage/installed/ecm-6.4.4] 
Error 1

make[1]: *** [all] Error 2


real 0m22.540s

user 0m9.866s

sys 0m9.371s

***

Error building Sage.


The following package(s) may have failed to build:


package: ecm-6.4.4

log file: /Users/J_Honrubia/Sage/sage-6.10/sage/logs/pkgs/ecm-6.4.4.log

build directory: 
/Users/J_Honrubia/Sage/sage-6.10/sage/local/var/tmp/sage/build/ecm-6.4.4


The build directory may contain configuration files and other potentially

helpful information. WARNING: if you now run 'make' again, the build

directory will, by default, be deleted. Set the environment variable

SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this.


make: *** [all] Error 1



El jueves, 4 de febrero de 2016, 17:36:46 (UTC+1), Dima Pasechnik escribió:
>
> did the internet connection from the machine die during the build, or 
> perhaps you are behind some big bad firewall?
>
> On Thursday, 4 February 2016 15:21:59 UTC, jhonrubia6 wrote:
>>
>> ... and the new error  (on make distclean && make) is 
>>
>> /Users/J_Honrubia/Sage/sage-6.10/sage/build/pipestatus "sage-spkg -f 
>> setuptools-12.4 2>&1" "tee -a 
>> /Users/J_Honrubia/Sage/sage-6.10/sage/logs/pkgs/setuptools-12.4.log"
>>
>> /Users/J_Honrubia/Sage/sage-6.10/sage/src/bin/sage-env: line 434: 
>> /Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/R/share/Makevars.site: No 
>> such file or directory
>>
>> Found local metadata for setuptools-12.4
>>
>> Attempting to download package setuptools-12.4.tar.gz from mirrors
>>
>> Downloading the Sage mirror list
>>
>> Traceback (most recent call last):
>>
>>   File 
>> "/Users/J_Honrubia/Sage/sage-6.10/sage/src/bin/sage-download-file", line 
>> 457, in 
>>
>> tarball.download()
>>
>>   File 
>> "/Users/J_Honrubia/Sage/sage-6.10/sage/src/bin/sage-download-file", line 
>> 392, in download
>>
>> for mirror in MirrorList():
>>
>>   File 
>> "/Users/J_Honrubia/Sage/sage-6.10/sage/src/bin/sage-download-file", line 
>> 152, in __init__
>>
>> with contextlib.closing(urllib.urlopen(self.URL)) as f:
>>
>>   File 
>> "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/urllib.py", line 
>> 87, in urlopen
>>
>> return opener.open(url)
>>
>>   File 
>> "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/urllib.py", line 
>> 213, in open
>>
>> return getattr(self, name)(url)
>>
>>   File 
>> "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/urllib.py", line 
>> 350, in open_http
>>
>> h.endheaders(data)
>>
>>   File 
>> "/Users/J_Honrubia/Sage/sage-6.10/sage/local/lib/python/httplib.py", line 
>> 997, in 

Re: [sage-devel] Re: error rebuilding sage

[Volker Braun]

Just to point out the obvious: If you check out #18408 then you get 
Sage-6.8.beta7

You should merge in the latest Sage if you want to review that ticket; Its 
likely that there are merge conflicts anyways which need to be resolved 
first.

On Thursday, February 4, 2016 at 7:52:20 PM UTC+1, Jeroen Demeyer wrote:
>
> On 2016-02-04 19:32, jhonrubia6 wrote: 
> > I passed that point and now fails building ecm,... 
> > I do not understand what I am making wrong. I had a working installation 
> > on 7.0, then after checking out a ticket to review (#18408)I tried to 
> > build again and I'm having a lot of problems to get the installation 
> > working again 
>
> This should be fixed by 
> http://trac.sagemath.org/ticket/19233 
>
> Which version of Sage is that? 
>

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[sage-devel] Re: error rebuilding sage

[jhonrubia6]

I'm sorry, it's a typo when writing this message.
Anyway, I tried again, and now it's compiling ok. I do not really know why. 

El miércoles, 3 de febrero de 2016, 18:25:46 (UTC+1), jhonrubia6 escribió:
>
> after make dist-clean && make I've got an error compiling atlas-3.10.2. 
> Any ideas, other than re-cloning the sources?
>
> Setting up build directory for atlas-3.10.2
>
> Finished set up
>
> 
>
> Host system:
>
> Darwin OnoSendaiII.local 15.3.0 Darwin Kernel Version 15.3.0: Thu Dec 10 
> 18:40:58 PST 2015; root:xnu-3248.30.4~1/RELEASE_X86_64 x86_64
>
> 
>
> C compiler: gcc
>
> C compiler version:
>
> Configured with: --prefix=/Library/Developer/CommandLineTools/usr 
> --with-gxx-include-dir=/usr/include/c++/4.2.1
>
> Apple LLVM version 7.0.2 (clang-700.1.81)
>
> Target: x86_64-apple-darwin15.3.0
>
> Thread model: posix
>
> 
>
> Cannot execute fortran compiler ($FC)!
>
>
> real0m0.071s
>
> user0m0.041s
>
> sys 0m0.026s
>
> 
>
> Error installing package atlas-3.10.2
>
> 
>
> Please email sage-devel (http://groups.google.com/group/sage-devel)
>
> explaining the problem and including the relevant part of the log file
>
>   /Users/J_Honrubia/Sage/sage-6.10/sage/logs/pkgs/atlas-3.10.2.log
>
> Describe your computer, operating system, etc.
>
> If you want to try to fix the problem yourself, *don't* just cd to
>
> /Users/J_Honrubia/Sage/sage-6.10/sage/local/var/tmp/sage/build/atlas-3.10.2 
> and type 'make' or whatever is appropriate.
>
> Instead, the following commands setup all environment variables
>
> correctly and load a subshell for you to debug the error:
>
>   (cd 
> '/Users/J_Honrubia/Sage/sage-6.10/sage/local/var/tmp/sage/build/atlas-3.10.2' 
> && '/Users/J_Honrubia/Sage/sage-6.10/sage/sage' --sh)
>
> When you are done debugging, you can type "exit" to leave the subshell.
>
> 
>
> make[1]: *** 
> [/Users/J_Honrubia/Sage/sage-6.10/sage/local/var/lib/sage/installed/atlas-3.10.2]
>  
> Error 1
>
>
> real6m27.702s
>
> user4m16.457s
>
> sys 1m55.716s
>
> ***
>
> Error building Sage.
>
>
> The following package(s) may have failed to build:
>
>
> package: atlas-3.10.2
>
> log file: /Users/J_Honrubia/Sage/sage-6.10/sage/logs/pkgs/atlas-3.10.2.log
>
> build directory: 
> /Users/J_Honrubia/Sage/sage-6.10/sage/local/var/tmp/sage/build/atlas-3.10.2
>
>

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[sage-devel] Re: error rebuilding sage

[Volker Braun]

On Wednesday, February 3, 2016 at 6:25:46 PM UTC+1, jhonrubia6 wrote:
>
> after make dist-clean && make I've got an error 
>

its "make distclean" 

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