Re: [sage-release] Sage 9.4.beta1 released
This is now https://trac.sagemath.org/ticket/31921 > On 7/06/2021, at 13:33, François Bissey wrote: > > Checking how the feature works I think there was a mistake in the addition to > sage/features/databases.py > for knotinfo. It checks for a sage python module presence, which will always > be there since it is part of > sage, when it should have checked for a static file, like for the other > databases. -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/F41BEA41-42A8-4E46-8D0E-D9973A63FC83%40gmail.com.
Re: [sage-release] Sage 9.4.beta1 released
Checking how the feature works I think there was a mistake in the addition to sage/features/databases.py for knotinfo. It checks for a sage python module presence, which will always be there since it is part of sage, when it should have checked for a static file, like for the other databases. > On 7/06/2021, at 13:18, François Bissey wrote: > > I have trouble building the documentation in sage-on-gentoo because of #30352 > which doesn’t seem to be > implementing features properly. That error wouldn’t happen on vanilla sage > because the build is not done > in a sandbox and the build system wouldn’t try to write a system location. > > * python3_9: running distutils-r1_run_phase python_compile_all > /var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/rings/padics/padic_base_leaves.py:1104: > DeprecationWarning: invalid escape sequence \Z > """ > /var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/rings/padics/padic_base_leaves.py:1139: > DeprecationWarning: invalid escape sequence \Q > """ > * ACCESS DENIED: unlinkat: /usr/share/sage/knotinfo > rm: cannot remove '/usr/share/sage/knotinfo': Permission denied > * ACCESS DENIED: mkdir:/usr/share/sage/knotinfo > Traceback (most recent call last): > File > "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/databases/knotinfo_db.py", > line 420, in demo_version >self._num_knots = load(num_knots_file) > File "sage/misc/persist.pyx", line 187, in sage.misc.persist.load > (/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/cythonized/sage/misc/persist.c:2807) >with open(filename, 'rb') as fobj: > FileNotFoundError: [Errno 2] No such file or directory: > '/usr/share/sage/knotinfo/num_knots.sobj' > > During handling of the above exception, another exception occurred: > > Traceback (most recent call last): > File > "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/sage_docbuild/__main__.py", > line 1, in >from sage_docbuild import main > File > "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/sage_docbuild/__init__.py", > line 57, in >import sage.all > File > "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/all.py", > line 215, in >from sage.knots.all import * > File > "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/knots/all.py", > line 6, in >if DatabaseKnotInfo().is_present(): > File > "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/features/__init__.py", > line 162, in is_present >res = self._is_present() > File > "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/features/__init__.py", > line 823, in _is_present >importlib.import_module(self.name) > File "/usr/lib/python3.9/importlib/__init__.py", line 127, in import_module >return _bootstrap._gcd_import(name[level:], package, level) > File > "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/knots/knotinfo.py", > line 239, in >from sage.databases.knotinfo_db import KnotInfoColumns, db > File > "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/databases/knotinfo_db.py", > line 815, in >dc = db.columns() > File "sage/misc/cachefunc.pyx", line 2310, in > sage.misc.cachefunc.CachedMethodCallerNoArgs.__call__ > (/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/cythonized/sage/misc/cachefunc.c:12918) >self.cache = f(self._instance) > File > "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/databases/knotinfo_db.py", > line 594, in columns >column_dict = self.read_column_dict() > File "sage/misc/cachefunc.pyx", line 2310, in > sage.misc.cachefunc.CachedMethodCallerNoArgs.__call__ > (/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/cythonized/sage/misc/cachefunc.c:12918) >self.cache = f(self._instance) > File > "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/databases/knotinfo_db.py", > line 617, in read_column_dict >if self.demo_version(): > File > "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/databases/knotinfo_db.py", > line 422, in demo_version >self.reset_filecache() > File > "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/databases/knotinfo_db.py", > line 391, in reset_filecache >sage_makedirs(sobj_path) > File > "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/misc/misc.py", > line 93, in sage_makedirs >os.makedirs(dirname) > File "/usr/lib/python3.9/os.py", line 225, in makedirs >mkdir(name, mode
Re: [sage-release] Sage 9.4.beta1 released
I have trouble building the documentation in sage-on-gentoo because of #30352 which doesn’t seem to be implementing features properly. That error wouldn’t happen on vanilla sage because the build is not done in a sandbox and the build system wouldn’t try to write a system location. * python3_9: running distutils-r1_run_phase python_compile_all /var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/rings/padics/padic_base_leaves.py:1104: DeprecationWarning: invalid escape sequence \Z """ /var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/rings/padics/padic_base_leaves.py:1139: DeprecationWarning: invalid escape sequence \Q """ * ACCESS DENIED: unlinkat: /usr/share/sage/knotinfo rm: cannot remove '/usr/share/sage/knotinfo': Permission denied * ACCESS DENIED: mkdir:/usr/share/sage/knotinfo Traceback (most recent call last): File "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/databases/knotinfo_db.py", line 420, in demo_version self._num_knots = load(num_knots_file) File "sage/misc/persist.pyx", line 187, in sage.misc.persist.load (/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/cythonized/sage/misc/persist.c:2807) with open(filename, 'rb') as fobj: FileNotFoundError: [Errno 2] No such file or directory: '/usr/share/sage/knotinfo/num_knots.sobj' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/sage_docbuild/__main__.py", line 1, in from sage_docbuild import main File "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/sage_docbuild/__init__.py", line 57, in import sage.all File "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/all.py", line 215, in from sage.knots.all import * File "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/knots/all.py", line 6, in if DatabaseKnotInfo().is_present(): File "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/features/__init__.py", line 162, in is_present res = self._is_present() File "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/features/__init__.py", line 823, in _is_present importlib.import_module(self.name) File "/usr/lib/python3.9/importlib/__init__.py", line 127, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/knots/knotinfo.py", line 239, in from sage.databases.knotinfo_db import KnotInfoColumns, db File "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/databases/knotinfo_db.py", line 815, in dc = db.columns() File "sage/misc/cachefunc.pyx", line 2310, in sage.misc.cachefunc.CachedMethodCallerNoArgs.__call__ (/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/cythonized/sage/misc/cachefunc.c:12918) self.cache = f(self._instance) File "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/databases/knotinfo_db.py", line 594, in columns column_dict = self.read_column_dict() File "sage/misc/cachefunc.pyx", line 2310, in sage.misc.cachefunc.CachedMethodCallerNoArgs.__call__ (/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/cythonized/sage/misc/cachefunc.c:12918) self.cache = f(self._instance) File "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/databases/knotinfo_db.py", line 617, in read_column_dict if self.demo_version(): File "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/databases/knotinfo_db.py", line 422, in demo_version self.reset_filecache() File "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/databases/knotinfo_db.py", line 391, in reset_filecache sage_makedirs(sobj_path) File "/var/tmp/portage/sci-mathematics/sage-/work/sage-/src-python3_9/build/lib/sage/misc/misc.py", line 93, in sage_makedirs os.makedirs(dirname) File "/usr/lib/python3.9/os.py", line 225, in makedirs mkdir(name, mode) PermissionError: [Errno 13] Permission denied: '/usr/share/sage/knotinfo’ Various bits of sage try to recreate share/knotinfo/num_knots.sobj which isn’t installed because I haven’t packaged it yet. This shouldn’t be an issue since database_knotinfo is still optional. The problem here is that it seems that _feature.is_present() is always true, including when it is called at https://github.com/sagemath/sage/blob/develop/src/sage/databases/knotinfo_db.py#L416 I cannot find where it could
Re: [sage-release] Sage 9.4.beta1 released
> On Jun 6, 2021, at 11:40 , Volker Braun wrote: > > As always, you can get the latest beta version from the "develop" git branch. > Alternatively, the self-contained source tarball is at > http://www.sagemath.org/download-latest.html Built without problems from a fresh clone of the develop tree on macOS 10.13.6 (2017 iMac Pro, 18-core Xeon W). Testing (‘ptestlong’) yielded two failures: sage -t --long --warn-long 70.2 --random-seed=0 src/sage/geometry/polyhedron/base.py # 1 doctest failed sage -t --long --warn-long 70.2 --random-seed=0 src/sage/graphs/bipartite_graph.py # 1 doctest failed The first failure was reported for testing 9.4-B0 on this system. The second, as follows, is new: File "src/sage/graphs/bipartite_graph.py", line 329, in sage.graphs.bipartite_graph.BipartiteGraph.__init__ Failed example: print(round(get_memory_usage() - start_mem)) Expected: 0.0 Got: 3.0 Following a remark of Volker’s in an earlier thread, I ran each (separately) in a loop. The first consistently failed (“expected True, got False”). The second mostly succeeded (70-80% of the time). The failures were similar, but with varying non-zero values. Maybe good garbage vs. bad garbage? Justin -- Justin C. Walker Director, Institute for the Absorption of Federal Funds -- Taxes, n.: Of life's two certainties, the only one for which you can get an extension. -- -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/50350385-D037-4DB0-BE09-09C872651C15%40mac.com.
Re: [sage-release] Sage 9.4.beta0 released
> On May 26, 2021, at 14:13, Volker Braun wrote: > > As always, you can get the latest beta version from the "develop" git branch. > Alternatively, the self-contained source tarball is at > http://www.sagemath.org/download-latest.html Built from a fresh clone of the develop tree on macOS 10.13.6 (2017 iMac Pro, Xeon W). No problems during build. Two test failures (‘ptestlong’): sage -t --long --warn-long 72.7 --random-seed=0 src/sage/geometry/polyhedron/base.py # 1 doctest failed sage -t --long --warn-long 72.7 --random-seed=0 src/sage/misc/package.py # 1 doctest failed First failure: File "src/sage/geometry/polyhedron/base.py", line 6523, in sage.geometry.polyhedron.base.Polyhedron_base.face_lattice Failed example: n == get_memory_usage() Expected: True Got: False Second failure known and fixed. Thanks! Justin -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/FFDAA165-6B27-4C6F-897F-341F8101F635%40mac.com.
[sage-release] Sage 9.4.beta1 released
As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html 30ee8d6505 (tag: 9.4.beta1, trac/develop) Updated SageMath version to 9.4.beta1 7690208434 Trac #31903: Build errors in padic_relaxed_element 605c100c46 Trac #31848: Random failure: sage.libs.gap.util.GAPError: Error, OnSets: must be a set 24a34ee595 Trac #31825: Failure when testing sage_conf version 5067635403 Trac #31692: Refactor display behavior of mixed forms 08b5a55b44 Trac #31691: Turn mixed form algebra into de Rham complex e30645c055 Trac #31686: Speed up factoring finite field multiplicative order 490c3ddfeb Trac #31684: Improve WordMorphism._language_naive 3e413ce3b4 Trac #31681: DiGraph.layout_acyclic_dummy assumes it can sort lists of vertices 5b23c1fac2 Trac #31677: Open subsets of arbitrary subsets of manifolds a8ed75663a Trac #31676: Hash of mpmath complex numbers produces OverFlowError 24c78cf7f3 Trac #31674: Make open subsets of immersed/embedded submanifolds immersed/embedded submanifolds 2f2b1540f7 Trac #31658: Slight speed-up in copy method fc7a3728c8 Trac #31654: copy_from for scalar fields db698c31ed Trac #31653: Images of continuous maps and embedded submanifolds as manifold subsets b573a54ba3 Trac #31650: improve LazyImport 8600573a7f Trac #31647: Update sympy to 1.8 b2aa0f6261 Trac #31633: Simplify VectorField.__call__ 4200c96400 Trac #31619: Cholesky factorization and positive-definite testing over inexact rings 60380a3cf3 Trac #31618: Some documentation improvements in sage.modular.quatalg.brandt ab0715d126 Trac #31615: faster order complex for posets c95fe8492a Trac #31614: Remove dead _cholesky_decomposition_ from matrix2.pyx 749b0ad122 Trac #31613: ClusterAlgebra.greedy_element bug and further improvements ad89df812b Trac #31609: Add method tangent_vector to differentiable manifolds 63c3d0fecb Trac #31594: Accept giac-1.7.x from the system c58463cf86 Trac #31526: Drop support for optional packages with system gcc 4.x on ubuntu-trusty, debian-jessie, linuxmint-17, centos-7 8d55a3f756 Trac #31489: Galois subgroups 9c85a6c1cf Trac #30352: Interface to the KnotInfo and LinkInfo databases 9f031cdb05 Trac #29222: Improvements to padic polylog 9caac06757 Trac #28890: Install fewer static libraries e94bd31252 Trac #26635: Major extensions to local components code 9f3988d9a5 Trac #21203: basic element and parent for k-regular sequences 3b414bea4b Trac #20331: A MIPVariable's repr should include some useful information 061d4b71df Trac #31860: Restore support for sage-bootstrap-python = python 3.6 6aa4ecee16 (tag: 9.4.beta0) Updated SageMath version to 9.4.beta0 -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/8b14f1ca-ba5f-45c6-875f-b6d45a789806n%40googlegroups.com.
