Re: [sage-release] Sage no longer installs on Debian testing after make distclean

['Jonathan Kliem' via sage-release]

I had this happen before. It's a bug a failed to report, but I suppose 
with an easy fix (at least it was easy for me). I'm not exactly sure how 
I fixed it. Something appears to be broken with the build chain.


Can you touch `src/sage/libs/flint/*` and recompile this part and see if 
this fixes your issue?


I had this problem when working on 
https://trac.sagemath.org/ticket/32211. And I believe I fixed it by 
touching the correct files indicated at startup and running `sage -b`.


Jonathan

On 18.12.21 13:17, Emmanuel Charpentier wrote:
On Debian testing running on core i7 + 16 GB RAM, an attempt at 
upgrading Sage 9.5.beta7 compiled from a git tree  to 9.5.beta8 
initially succeeded ; however, after a routine upgrade of Testing, I 
saw Sage crashing at startup. An attempt to rebuild the Sage library 
failed, and led me to restort to "make distclean && make". This failed 
totally :see this report 
 on sage-support.


Attached :
the initial crash report after Debian upgrade ;
the installation log after make-distclean ;
the compilation log of linbox, pointed to by the error messagesof 
install.log.


I'm somewhat stuck...
--
Emmanuel Charpentier

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Re: [sage-release] Sage 9.5.beta4 released

['Jonathan Kliem' via sage-release]

Starting with this release, doctests will be run with a random seed chosen at random. This can be reproduced as indicated by the output
sage -t --random-seed=1234
Most of the doctests should be ready for this. I opened
https://trac.sagemath.org/ticket/32544
to collect further failures due to fuzzing the doctests. Also it now makes sense to test your algorithm on random instances (previously this would test exactly one object).
On Oct 21, 2021 1:10 PM, Kenji Iohara  wrote:On my mac OS 11.6, the first compilation worked and ``make ptestlong’’ passed. 20/10/2021 1:06、Volker Braun のメール:As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html 056b8d4e7b (tag: 9.5.beta4, trac/develop) Updated SageMath version to 9.5.beta4e8ab458165 Trac #32707: flit_core: Update to 3.4.0; setuptools_scm: Update to 6.3.218abd75ff8 Trac #32698: Fix up builds without system python3 after #32442e866070bb9 Trac #32352: Efficient algorithm to compute products in the C' basis of an Iwahori-Hecke algebraab2c01cf28 Trac #32328: Adding post_critical_set91184aeb3f Trac #32314: passing a generator to gcd() failsdc4f1700bc Trac #32266: Enforce normalization in coxeter3-implemented Coxeter groups17c789a5f7 Trac #32258: Adjustments for the 2-adic lseries of elliptic curvesafa596f16a Trac #32200: Add developer manual section on integer return values64dd2c46d4 Trac #32199: Conjugating Set Runtime Improvementdaaec36f03 Trac #32155: Add is_linearly_independent to projective space over a ring6b1bc6480c Trac #31994: Sigma invariants for P^N, N > 174f3bc75c8 Trac #30477: preparser: implicit multiplication conflicts with Python's complex literals017d1dc75c Trac #17537: The geodetic closure of a graph95908b0881 Trac #15219: numerical integral needs an operand for callable symbolic functionsbf739637a9 Trac #32693: 1 internet failing doctest in src/sage/calculus/calculus.pycad17d0e34 Trac #32682: Replace "ce1fd8d611 Trac #32675: Partially replace "9a9a62a17e Trac #32646: Update package sqlite to 3.36.0e0baa96229 Trac #32612: sage.rings.abc.{Real,Complex}{Interval,Ball}Field; deprecate is_{Real,Complex}IntervalField9cbde3ccad Trac #32672: src/setup.py: Don't cythonize everything in src/e4e87f2419 Trac #14657: set_embedding fails for multigraphs913e577deb Trac #32673: src/setup.py: Do not need Cython for sdist or egg_info297f60d39c Trac #32670: use itertools in abstract_tree7bba5e0c90 Trac #32668: replace ba408efdab Trac #32666: Polyhedron_base.vertex_adjacency_matrix: Do not use face_latticede6b6a1340 Trac #32663: more conversions for Bessel functionsb93313c326 Trac #32662: more conversions for trig and hyperbolic functions515cbeaf29 Trac #32661: fix some annotations in combinat5333e3f514 Trac #32658: PolyhedronFace.affine_tangent_cone returning the polyhedron for the empty faceb878d66729 Trac #32655: remove deprecated stuff in rings/polynomial38e9da1ee3 Trac #32653: sage.geometry.polyhedron: Mark doctests # optional - sage.combinat4f73d490e4 Trac #32652: sage.geometry.polyhedron: Mark doctests # optional - sage.rings.number_field5c0ceda802 Trac #32647: remove some things from namespacef2ea7083fd Trac #32643: fix a problem in is_connected16097f3904 Trac #32642: enumeration of linear intervals in posets592613cd12 Trac #32639: partial pep cleanup of one cluster file9d8af604b2 Trac #32638: sage.structure.element: Add abc _expression_; deprecate is_Expression etc.4c3a338d15 Trac #32636: sage.matrix: Remove hard dependencies on sage.schemesa4d6b7196e Trac #32634: sage.misc.latex, sage.repl.display.fancy_repr: Make imports more local9e00281ac4 Trac #32633: pep cleanup for toric Chow group906f9f446d Trac #32629: quantum determinant93abcdb4ce Trac #32628: ConvexSet_base, Polyhedron_base: In _test methods, do not fail if some modules are unavailable873a7b2e71 Trac #32624: Update imports of Familyc4e5b94949 Trac #32610: Deprecate is_RealField, is_ComplexField, is_RealDoubleField, is_ComplexDoubleFieldc6268d19b3 Trac #29935: implicitly fuzz RNG-dependent doctests with a random random seedec501d35fc Trac #32623: QuantumMatrixCoordinate broken for larger number of variables4606a5f467 Trac #32622: sage.categories: Remove .all imports (except sage.categories.all)4b50b849c0 Trac #32621: Replace imports from sage.misc.all by more specific importse78d69d71e Trac #32620: Replace imports of QQ, ZZ, GF, Integer from sage.rings.all by more specific importse28338b1ae Trac #32619: lazy_import: Muffle diagnostic messages for "at_startup"a55a400f56 Trac #32618: Some micro-optimizations and cleanup to (skew) tableau59dfff2cba Trac #32615: Faster arithmetic with function field idealsb743b48faf Trac #32614: Features and optional tags for sage modules provided by separate distributionsd694413bf0 Trac #32606: Replace is_IntegerModRing by isinstance with new class sage.rings.abc.IntegerModRing75e55b0def Trac #32595: Remove package nose32804c7a2e

Re: [sage-release] Re: Trouble with gfan

['Jonathan Kliem' via sage-release]

Dear Simon,

./configure --help | grep gcc

reveals that you should configure sage with

--with-system-gcc=no

I hope that works for you.

Jonathan

On 02.09.21 15:20, Simon King wrote:

Hi Matthias,

On 2021-09-01, Matthias Köppe  wrote:

OK, Simon, there is only one conclusion: Your machine is haunted and you
should abandon it.

Witchcraft?? OMG!!

Anyway, from your and Dima's previous suggestions it seems to me that
the trouble might have been caused by a too old version of gcc. Would it
make sense to do "make distclean" and then try again with Sage's own
gcc? If so: Could you remind me the command for forcing Sage to build
(and use) the gcc spkg?

Best regards,
Simon



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Re: [sage-release] Re: Sage 9.3.beta4 released

['Jonathan Kliem' via sage-release]

Ok, I think it has nothing to do with #30030.

Running

make build

leads to the blank screen for the notebook (also with "./configure" before).

Running

sage -b

fixes it (but only until you run `make build` again).

Am Samstag, 11. Juli 2020 15:35:56 UTC+2 schrieb Dima Pasechnik:
>
> I can confirm that it does break things for me too (and reverting fixes) 
> on Linux/Firefox. 
>
> But if I re-revert back, everything works. So this is some kind  of 
> caching issue, I gather. 
>
> On Sat, Jul 11, 2020 at 1:40 PM 'Jonathan Kliem' via sage-release 
> > wrote: 
> > 
> > https://trac.sagemath.org/ticket/30030 broke the jupyter notebook for 
> me. 
> > 
> > Please wait while the Sage Jupyter Notebook server starts... 
> > [I 14:23:35.535 NotebookApp] Using MathJax: 
> nbextensions/mathjax/MathJax.js 
> > [I 14:23:35.655 NotebookApp] Serving notebooks from local directory: 
> /home/mi/kliem 
> > [I 14:23:35.655 NotebookApp] The Jupyter Notebook is running at: 
> > [I 14:23:35.655 NotebookApp] 
> http://localhost:/?token=13410c6dbd032a2e31784207d69dcb1bbf54374b475a6449 
> > [I 14:23:35.656 NotebookApp] Use Control-C to stop this server and shut 
> down all kernels (twice to skip confirmation). 
> > [C 14:23:35.658 NotebookApp] 
> > 
> > To access the notebook, open this file in a browser: 
> > file:///run/user/284784/jupyter/nbserver-12512-open.html 
> > Or copy and paste one of these URLs: 
> > 
> http://localhost:/?token=13410c6dbd032a2e31784207d69dcb1bbf54374b475a6449 
> > [I 14:23:47.500 NotebookApp] 302 GET 
> /?token=13410c6dbd032a2e31784207d69dcb1bbf54374b475a6449 (127.0.0.1) 0.33ms 
> > [I 14:23:55.390 NotebookApp] Creating new notebook in 
> > [W 14:23:55.908 NotebookApp] 404 GET 
> /nbextensions/mathjax/MathJax.js?config=TeX-AMS-MML_HTMLorMML-full,Safe&delayStartupUntil=configured
>  
> (127.0.0.1) 5.67ms referer=
> http://localhost:/notebooks/Untitled2.ipynb?kernel_name=sagemath 
> > [W 14:24:54.535 NotebookApp] 404 GET 
> /nbextensions/mathjax/MathJax.js?config=TeX-AMS-MML_HTMLorMML-full,Safe&delayStartupUntil=configured
>  
> (127.0.0.1) 1.72ms referer=
> http://localhost:/notebooks/Dokumente/SageDays109/CombinatorialPolyhedron.ipynb
>  
> > 
> > All I'm seeing is something like this. I can navigate the folders, but 
> when I open a file I just see a blank page in the browser. 
> > 
> > It worked just fine on debian buster and ubuntu bionic. Reverting the 
> commit it works fine again. I'm using firefox, but I cannot get it to work 
> on chromium either. 
> > 
> > Am Donnerstag, 9. Juli 2020 00:50:33 UTC+2 schrieb Volker Braun: 
> >> 
> >> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html 
> >> 
> >> 02b0be1ff8 Updated SageMath version to 9.2.beta4 
> >> 3e65aa67cc Trac #29878: Remove `sage -twistd` from `src/bin/sage` 
> >> 
> >> a3308ffb43 Trac #29862: Installation guide: change python version in 
> conda instructions 
> >> a6215602a5 Trac #29828: Broken conversion from ZZ['x'] to Qp['y'] 
> >> 5d2577a0ce Trac #29746: Document integer overflow bug in 
> vector_space_dimension() 
> >> d0e1751d76 Trac #30050: add even more missing empty lines in the doc 
> >> 87d9811918 Trac #30048: get rid of python2 mentioned in 
> .github/workflows and README.md 
> >> aaa2bdf045 Trac #30042: clarify docs of nauty_geng 
> >> 381891c57c Trac #30028: remove some traces of __cmp__ 
> >> 917f8de0eb Trac #30021: FPLLL 5.3.3 
> >> 837e9ad07a Trac #30005: Small documentation fixes in combinat 
> >> 063c266cbf Trac #29997: a bunch of typos 
> >> ac7ee1abe6 Trac #29994: Add integral curves over QQ 
> >> 6612f2 Trac #29917: Move ChainComplexes from 
> sage.categories.category_types to a separate module 
> >> 736ceffc41 Trac #29910: sage.rings.finite_rings.element_givaro: Remove 
> dependency on NTL 
> >> 2bb470b2f2 Trac #29897: database_stein_watkins_mini installation is 
> broken 
> >> ad109e3649 Trac #29851: tox.ini: debian-bullseye, -sid have Python3.8 
> instead of 3.7 
> >> 8de8febcb6 Trac #29808: fix left and right actions of permutations on 
> matrices 
> >> 76f6767a09 Trac #29794: spring cleanup in modsym/space.py 
> >> f62fb5f99e Trac #29787: 1 optional internet oeis doctest failing (busy 
> beaver ordering) 
> >> 1f983640f6 Trac #29733: Create gitattributes file specifyin

[sage-release] Re: Sage 9.3.beta4 released

['Jonathan Kliem' via sage-release]

https://trac.sagemath.org/ticket/30030 broke the jupyter notebook for me.

Please wait while the Sage Jupyter Notebook server starts...
[I 14:23:35.535 NotebookApp] Using MathJax: nbextensions/mathjax/MathJax.js
[I 14:23:35.655 NotebookApp] Serving notebooks from local directory: /home/
mi/kliem
[I 14:23:35.655 NotebookApp] The Jupyter Notebook is running at:
[I 14:23:35.655 NotebookApp] http:
//localhost:/?token=13410c6dbd032a2e31784207d69dcb1bbf54374b475a6449
[I 14:23:35.656 NotebookApp] Use Control-C to stop this server and shut 
down all kernels (twice to skip confirmation).
[C 14:23:35.658 NotebookApp] 

To access the notebook, open this file in a browser:
file:///run/user/284784/jupyter/nbserver-12512-open.html
Or copy and paste one of these URLs:
http:
//localhost:/?token=13410c6dbd032a2e31784207d69dcb1bbf54374b475a6449
[I 14:23:47.500 NotebookApp] 302 GET /?token=
13410c6dbd032a2e31784207d69dcb1bbf54374b475a6449 (127.0.0.1) 0.33ms
[I 14:23:55.390 NotebookApp] Creating new notebook in 
[W 14:23:55.908 NotebookApp] 404 GET /nbextensions/mathjax/MathJax.js?config
=TeX-AMS-MML_HTMLorMML-full,Safe&delayStartupUntil=configured (127.0.0.1) 
5.67ms referer=http:
//localhost:/notebooks/Untitled2.ipynb?kernel_name=sagemath
[W 14:24:54.535 NotebookApp] 404 GET /nbextensions/mathjax/MathJax.js?config
=TeX-AMS-MML_HTMLorMML-full,Safe&delayStartupUntil=configured (127.0.0.1) 
1.72ms referer=http:
//localhost:/notebooks/Dokumente/SageDays109/CombinatorialPolyhedron.ipynb

All I'm seeing is something like this. I can navigate the folders, but when 
I open a file I just see a blank page in the browser.

It worked just fine on debian buster and ubuntu bionic. Reverting the 
commit it works fine again. I'm using firefox, but I cannot get it to work 
on chromium either.

Am Donnerstag, 9. Juli 2020 00:50:33 UTC+2 schrieb Volker Braun:
>
> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html 
>
> 02b0be1ff8 Updated SageMath version to 9.2.beta4
> 3e65aa67cc Trac #29878: Remove `sage -twistd` from `src/bin/sage`
>
a3308ffb43 Trac #29862: Installation guide: change python version in conda 
> instructions
> a6215602a5 Trac #29828: Broken conversion from ZZ['x'] to Qp['y']
> 5d2577a0ce Trac #29746: Document integer overflow bug in 
> vector_space_dimension()
> d0e1751d76 Trac #30050: add even more missing empty lines in the doc
> 87d9811918 Trac #30048: get rid of python2 mentioned in .github/workflows 
> and README.md
> aaa2bdf045 Trac #30042: clarify docs of nauty_geng
> 381891c57c Trac #30028: remove some traces of __cmp__
> 917f8de0eb Trac #30021: FPLLL 5.3.3
> 837e9ad07a Trac #30005: Small documentation fixes in combinat
> 063c266cbf Trac #29997: a bunch of typos
> ac7ee1abe6 Trac #29994: Add integral curves over QQ
> 6612f2 Trac #29917: Move ChainComplexes from 
> sage.categories.category_types to a separate module
> 736ceffc41 Trac #29910: sage.rings.finite_rings.element_givaro: Remove 
> dependency on NTL
> 2bb470b2f2 Trac #29897: database_stein_watkins_mini installation is broken
> ad109e3649 Trac #29851: tox.ini: debian-bullseye, -sid have Python3.8 
> instead of 3.7
> 8de8febcb6 Trac #29808: fix left and right actions of permutations on 
> matrices
> 76f6767a09 Trac #29794: spring cleanup in modsym/space.py
> f62fb5f99e Trac #29787: 1 optional internet oeis doctest failing (busy 
> beaver ordering)
> 1f983640f6 Trac #29733: Create gitattributes file specifying proper line 
> endings
> bed0bc6493 Trac #29714: some micro optimisations in comparison to empty 
> list
> d000965b0a Trac #29668: map_coefficients for Laurent polynomials
> 5ef2540085 Trac #29605: plotting function for forests
> 98a1c9be6d Trac #29514: implement formatting of elements in RDF/CDF
> 6629f4c3a9 Trac #12074: real nth root function
> 8cb2f93213 Trac #8111: gcd of rationals is trouble
> 55663b6cc7 Trac #30057: remove some old "known bug" tags about log
> 48a6328304 Trac #30047: add missing empty lines in the doc
> 8aebea9275 Trac #30034: Description of ramification_index in local_generic 
> is wrong
> aa4e325083 Trac #30030: Prevent JSmol from phoning home
> 20ea231df1 Trac #30019: 1 internet doctest failing in combinat/quickref.py
> 030a4794fe Trac #30009: using coprime_integers in more places
> 1cecf97864 Trac #30007: Allow regular partition tuples to have different 
> \ell values on different components
> 684446ab04 Trac #30006: implement multiplicative_order for elements of AA
> 1a9e4473b1 Trac #30004: Added new constructions for BIBDs
> a01f419522 Trac #30003: some details in Kloosterman sums
> d4caf56bd2 Trac #29987: build/make/install: Do not depend on 
> src/bin/sage-version.sh
> 02e6a8d2bd Trac #29959: Extended the construction of BIBDs to allow for 
> \lambda different from 1
> 7d65facffb Trac #29955: Reduction from dancing links instance to MILP 
> instance

[sage-release] Re: Upgrading to Sage 9.2.beta2. Pb in doc.

['Jonathan Kliem' via sage-release]

Never mind. Sorry about the confusion.

I didn't read the last line, because there was some french in it. I should 
have. I didn't realize that probably all docbuilding errors look alike 
except for the last line.

Am Samstag, 27. Juni 2020 16:58:16 UTC+2 schrieb Emmanuel Charpentier:
>
>
>
> Le samedi 27 juin 2020 16:04:09 UTC+2, Jonathan Kliem a écrit :
>>
>> Looks like the same problem we had on 
>> https://trac.sagemath.org/ticket/27122#comment:64
>>
>> Are you compiling with CFLAGS containing `-march=native` or similiar?
>>
>
> I dunno : just doing "make distclean ; ./configure ; make".
>
> I think I need handholding...
>  
>
>>
>> Disabling `-march=native` for GAP solved the problem there.
>>
>> Here is the corresponding commit (needs some modification of course, but 
>> it's only two lines):
>>
>> 
>>
>> https://git.sagemath.org/sage.git/commit/?h=234338ea6283549195c4b22fc84cb621fcb75c48&id=4c52d4d43794f807875739deb27a51d46836764c
>>
>> I hope that helps.
>>
>> Jonathan
>>
>> P.S. The problem showed up all the sudden for centos-8 and linuxmint 
>> 19.3. Then also ubuntu bionic and ubuntu focal.
>>
>> Am Samstag, 27. Juni 2020 07:29:04 UTC+2 schrieb tdumont:
>>>
>>> When upgrading from 9.1 to 9.2, building the doc: 
>>> 1) 
>>>
>>> [reference] Sphinx v3.0.4 en cours d'exécution 
>>> [reference] WARNING: l'entrée html_static_path 
>>> '/usr/local/sage3/sage/src/doc/common/static' n'existe pas 
>>> [reference] WARNING: l'entrée html_static_path 'static' n'existe pas 
>>> [reference] WARNING: le fichier de favicon 'favicon.ico' n'existe pas 
>>> [reference] chargement de l'environnement pickled... échoué 
>>> [reference] échec : version non à jour de l’environnement de 
>>> construction 
>>> ... 
>>> [reference] 
>>> /usr/local/sage3/sage/src/doc/en/reference/references/index.rst:36: 
>>> WARNING: La citation [AAGMRZ2019] n'est pas référencée 
>>> [reference] 
>>> /usr/local/sage3/sage/src/doc/en/reference/references/index.rst:40: 
>>> WARNING: La citation [Ab1995] n'est pas référencée 
>>> ... (a lot of messages like this) 
>>> [reference] build a réussi, 1327 warnings. 
>>> [reference] The inventory files are in 
>>> local/share/doc/sage/inventory/en/reference/references. 
>>>
>>> 2) 
>>> Error building the documentation. 
>>> Traceback (most recent call last): 
>>>   File "/usr/local/sage3/sage/local/lib/python3.7/runpy.py", line 193, 
>>> in _run_module_as_main 
>>> "__main__", mod_spec) 
>>>   File "/usr/local/sage3/sage/local/lib/python3.7/runpy.py", line 85, in 
>>> _run_code 
>>> exec(code, run_globals) 
>>>   File 
>>> "/usr/local/sage3/sage/local/lib/python3.7/site-packages/sage_setup/docbuild/__main__.py",
>>>  
>>>
>>> line 2, in  
>>> main() 
>>>   File 
>>> "/usr/local/sage3/sage/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py",
>>>  
>>>
>>> line 1721, in main 
>>> builder() 
>>>   File 
>>> "/usr/local/sage3/sage/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py",
>>>  
>>>
>>> line 328, in _wrapper 
>>> getattr(get_builder(document), 'inventory')(*args, **kwds) 
>>>   File 
>>> "/usr/local/sage3/sage/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py",
>>>  
>>>
>>> line 551, in _wrapper 
>>> self._build_bibliography(lang, format, *args, **kwds) 
>>>   File 
>>> "/usr/local/sage3/sage/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py",
>>>  
>>>
>>> line 528, in _build_bibliography 
>>> build_many(build_ref_doc, references) 
>>>   File 
>>> "/usr/local/sage3/sage/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py",
>>>  
>>>
>>> line 281, in build_many 
>>> _build_many(target, args, processes=NUM_THREADS) 
>>>   File 
>>> "/usr/local/sage3/sage/local/lib/python3.7/site-packages/sage_setup/docbuild/utils.py",
>>>  
>>>
>>> line 283, in build_many 
>>> raise worker_exc.original_exception 
>>> OSError: WARNING: l'entrée html_static_path 
>>> '/usr/local/sage3/sage/src/doc/common/static' n'existe pas 
>>>
>>>
>>> * This is persisting, even after a "make doc-clean" 
>>> * Ubuntu 20-04. 
>>>
>>> But, as could be expected, sage starts. 
>>>
>>> Yours. 
>>> t.d. 
>>>
>>

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[sage-release] Re: Upgrading to Sage 9.2.beta2. Pb in doc.

['Jonathan Kliem' via sage-release]

Looks like the same problem we had on 
https://trac.sagemath.org/ticket/27122#comment:64

Are you compiling with CFLAGS containing `-march=native` or similiar?

Disabling `-march=native` for GAP solved the problem there.

Here is the corresponding commit (needs some modification of course, but 
it's only two lines):


https://git.sagemath.org/sage.git/commit/?h=234338ea6283549195c4b22fc84cb621fcb75c48&id=4c52d4d43794f807875739deb27a51d46836764c

I hope that helps.

Jonathan

P.S. The problem showed up all the sudden for centos-8 and linuxmint 19.3. 
Then also ubuntu bionic and ubuntu focal.

Am Samstag, 27. Juni 2020 07:29:04 UTC+2 schrieb tdumont:
>
> When upgrading from 9.1 to 9.2, building the doc: 
> 1) 
>
> [reference] Sphinx v3.0.4 en cours d'exécution 
> [reference] WARNING: l'entrée html_static_path 
> '/usr/local/sage3/sage/src/doc/common/static' n'existe pas 
> [reference] WARNING: l'entrée html_static_path 'static' n'existe pas 
> [reference] WARNING: le fichier de favicon 'favicon.ico' n'existe pas 
> [reference] chargement de l'environnement pickled... échoué 
> [reference] échec : version non à jour de l’environnement de construction 
> ... 
> [reference] 
> /usr/local/sage3/sage/src/doc/en/reference/references/index.rst:36: 
> WARNING: La citation [AAGMRZ2019] n'est pas référencée 
> [reference] 
> /usr/local/sage3/sage/src/doc/en/reference/references/index.rst:40: 
> WARNING: La citation [Ab1995] n'est pas référencée 
> ... (a lot of messages like this) 
> [reference] build a réussi, 1327 warnings. 
> [reference] The inventory files are in 
> local/share/doc/sage/inventory/en/reference/references. 
>
> 2) 
> Error building the documentation. 
> Traceback (most recent call last): 
>   File "/usr/local/sage3/sage/local/lib/python3.7/runpy.py", line 193, 
> in _run_module_as_main 
> "__main__", mod_spec) 
>   File "/usr/local/sage3/sage/local/lib/python3.7/runpy.py", line 85, in 
> _run_code 
> exec(code, run_globals) 
>   File 
> "/usr/local/sage3/sage/local/lib/python3.7/site-packages/sage_setup/docbuild/__main__.py",
>  
>
> line 2, in  
> main() 
>   File 
> "/usr/local/sage3/sage/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py",
>  
>
> line 1721, in main 
> builder() 
>   File 
> "/usr/local/sage3/sage/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py",
>  
>
> line 328, in _wrapper 
> getattr(get_builder(document), 'inventory')(*args, **kwds) 
>   File 
> "/usr/local/sage3/sage/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py",
>  
>
> line 551, in _wrapper 
> self._build_bibliography(lang, format, *args, **kwds) 
>   File 
> "/usr/local/sage3/sage/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py",
>  
>
> line 528, in _build_bibliography 
> build_many(build_ref_doc, references) 
>   File 
> "/usr/local/sage3/sage/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py",
>  
>
> line 281, in build_many 
> _build_many(target, args, processes=NUM_THREADS) 
>   File 
> "/usr/local/sage3/sage/local/lib/python3.7/site-packages/sage_setup/docbuild/utils.py",
>  
>
> line 283, in build_many 
> raise worker_exc.original_exception 
> OSError: WARNING: l'entrée html_static_path 
> '/usr/local/sage3/sage/src/doc/common/static' n'existe pas 
>
>
> * This is persisting, even after a "make doc-clean" 
> * Ubuntu 20-04. 
>
> But, as could be expected, sage starts. 
>
> Yours. 
> t.d. 
>

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[sage-release] Re: Sage 9.1.rc4 released!

['Jonathan Kliem' via sage-release]

The deprecation warning is the tested output in polyhedron/base.py line 
9278.

affine_hull was deprecated in https://trac.sagemath.org/ticket/29326.

I don't see why this test shouldn't pass as it uses the same syntax as 
other deprecation tests (e.g. in src/sage/matrix/matrix.pyx line 8).
If it really doesn't pass, it should be fixed.

Am Montag, 11. Mai 2020 11:57:56 UTC+2 schrieb Sébastien Labbé:
>
> Testing many optional and external packages, I get
>
> Using 
> --optional=4ti2,cbc,ccache,cryptominisat,dot2tex,e_antic,external,fricas,glucose,latte_int,lidia,lrslib,
>
> memlimit,normaliz,notedown,openssl,pandoc_attributes,pycosat,pynormaliz,rst2ipynb,sage,sage_numerical_backends_coin,
> sage_numerical_backends_cplex,sage_numerical_backends_gurobi
>
> --
> sage -t --long src/sage/databases/findstat.py  # 8 doctests failed
> sage -t --long src/sage/geometry/polyhedron/base.py  # Bad exit: 1
> sage -t --long src/sage/graphs/generators/smallgraphs.py  # 2 doctests 
> failed
> --
> External software detected for doctesting: 
> cplex,ffmpeg,graphviz,imagemagick,internet,latex,pandoc
>
> Rerunning failed test, I get the same. Follow up at 
> https://trac.sagemath.org/ticket/25536
>
>
>
> Other than the bad exit in the polyhedron/base.py file, I also get a 
> deprecation warning:
>
> sage: _ = P.affine_hull() ## line 9278 ##
>
> ...
>
> DeprecationWarning: affine_hull is deprecated. Please use 
> affine_hull_projection instead.
> See https://trac.sagemath.org/29326 for details.
>
>

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[sage-release] Re: Sage 9.1.rc3 released

['Jonathan Kliem' via sage-release]

Thank you Samuel Lelievre and Emmanuel Charpentier for testing. Your 
doctests failures are known:

If pari 2.11.4 is installed on the system (e.g. debian testing), there are 
some failing doctests due to different representatives (see #29472 
 and #29313 
). This is really nothing to worry 
about just annoying:

sage -t src/sage/lfunctions/dokchitser.py # 2 doctests failed
sage -t src/sage/lfunctions/pari.py # 1 doctest failed
sage -t src/sage/rings/polynomial/polynomial_quotient_ring.py # 2 doctests 
failed
sage -t src/sage/schemes/elliptic_curves/ell_number_field.py # 3 doctests 
failed
sage -t src/sage/rings/number_field/unit_group.py # 1 doctest failed
sage -t src/sage/rings/number_field/number_field_element.pyx # 1 doctest 
failed
sage -t src/sage/rings/number_field/number_field.py # 8 doctests failed
sage -t src/sage/rings/number_field/number_field_ideal.py # 2 doctests 
failed

If you use glpk from your system, you will have two failing doctests as 
upstream rejected a patch that improves the error traceback for sage/giving 
warnings (to my understanding, see #29493 
):

sage -t src/sage/libs/glpk/error.pyx # 1 doctest failed
sage -t src/sage/numerical/backends/glpk_backend.pyx # 1 doctest failed

If you have libsqlite3 but not sqlite3 installed, you don't have the 
sqlite3 executable, witnessed by the following test (#29092 
):

sage -t src/sage/tests/cmdline.py # 3 doctests failed

I think none of those failures is serious enough that it needs to be 
handled now. We also need to make a general decision on how we deal with 
doctests that may vary slighly by the system package and how rigid we are 
with accepting system packages (is the glpk "bug" already serious enough to 
reject it).

Jonathan

Am Mittwoch, 6. Mai 2020 17:36:07 UTC+2 schrieb Emmanuel Charpentier:
>
> On Debian testing running on core i7 + 16 GB RAM, rebuilding 9.1.rc2 
> afresh (make distclean, make config , ./configure, make ptestlong) leads 
> to ten permanent errors:
> File Result P/T 
> src/sage/schemes/elliptic_curves/ell_number_field.py 3 doctests failed P 
> src/sage/rings/number_field/number_field.py 7 doctests failed P 
> src/sage/rings/number_field/number_field_element.pyx 1 doctest failed P 
> src/sage/rings/number_field/number_field_ideal.py 2 doctests failed P 
> src/sage/lfunctions/dokchitser.py 2 doctests failed P 
> src/sage/numerical/backends/glpk_backend.pyx 1 doctest failed P 
> src/sage/rings/polynomial/polynomial_quotient_ring.py 2 doctests failed P 
> src/sage/lfunctions/pari.py 1 doctest failed P 
> src/sage/libs/glpk/error.pyx 1 doctest failed P 
> src/sage/rings/number_field/unit_group.py 1 doctest failed P 
>
> The results of re-running these tests is in the attached file chkerrs.txt.
>
> HTH,
>
> Le mercredi 6 mai 2020 00:24:12 UTC+2, Volker Braun a écrit :
>
> As always, you can get the latest beta version from the "develop" git 
>> branch. Alternatively, the self-contained source tarball is at 
>> http://www.sagemath.org/download-latest.html 
>>
>> There are no more open blocker tickets no now would be a good time for 
>> you to test if you haven't already!
>>
>>
>> bfbaddcc58 (tag: 9.1.rc3, trac/develop) Updated SageMath version to 
>> 9.1.rc3
>> ec4fd4a567 Trac #29625: support for weighted term orders in normal_basis
>> 6e2957b534 Trac #29348: Remove dependency on 'twisted' for some 
>> unpickling in cartan_type
>> d51fbf9df3 Trac #28753: Ramification Type for Rational Maps
>> fa25d32e2e Trac #24601: 3D plot missing axis labels and tick numbers with 
>> viewer='threejs' and displayed in chrome.
>> f0f8016277 Trac #29624: PermutationGroup_generic.__richcmp__ does not 
>> check for op_NE
>> c8c581e29b Trac #29609: Compute the Conway mass directly from the genus 
>> symbol.
>> dc102aa724 Trac #29604: Laurent polynomials rings in characteristic 2 
>> have strange generators
>> 6bf0780980 Trac #29592: change _cmp_ to _richcmp_ in finite rings
>> 013ce41106 Trac #29570: Wrong parent when using diff_form of degree zero
>> 951a41f7b3 Trac #29553: add a method to test whether a polynomial is 
>> symmetric
>> 1b358237ec Trac #25797: Implement graftal lace cellular automata
>> 17e126688a Trac #29627: "sage -python", "sage -pip", etc.: Do not fall 
>> back to system Python
>> a4a63c8349 Trac #29626: Remove ./configure --enable-SPKG options for pip 
>> packages (for which this is not implemented)
>> e4fd7dfe8a Trac #29618: build/pkgs/conda.txt: Use python<3.8
>> 1924002fd7 Trac #29612: Fix palp issue with -DNDEBUG
>> ec976ffd37 Trac #29606: build/pkgs/maxima/spkg-install.in: Do not pass 
>> on another copy of CFLAGS, LDFLAGS
>> d92d65d89f Trac #29601: Fix singular configure patch
>> 4256058c21 Trac #29599: Remove C++17 flag from giac and lcalc
>> 20f930cead Trac #29598: Make sure latest openblas from conda is used
>> 588010006e Trac #29597: Don't override