Re: [sage-release] Re: Sage 8.9.beta9 released

2019-09-16 Thread Mariel Supina
Hello Dima,

Sorry for taking awhile to respond -- I have been away from my work 
computer. Re-installing cypari as you suggested did work. The problem 
appears to be fixed. Thank you very much for all of your help!

Best,
Mariel

On Wednesday, September 11, 2019 at 5:41:47 PM UTC+2, Dima Pasechnik wrote:
>
> On Wed, Sep 11, 2019 at 4:09 PM Mariel Supina 
> > wrote: 
> > 
> > 
> > 
> > On Wednesday, September 11, 2019 at 12:18:37 PM UTC+2, Dima Pasechnik 
> wrote: 
> >> 
> >> OK, thanks, let's do more debugging of cypari: 
> >> 
> >>cd /srv/public/shared/sage/upstream 
> >>tar xf  cypari2-2.1.1.tar.gz 
> >>cd cypari2-2.1.1/ 
> >> 
> >> now, start Sage's Python: 
> >> 
> >>../../sage -python 
> >> 
> >> and at its prompt, do 
> >> 
> >>import autogen 
> >>autogen.pari_share() 
> >> 
> >> 
> >> Post the result of the last 3 commands. 
> > 
> > 
> > '/srv/public/shared/sage/local/share/pari' 
> > 
> >> 
> >> 
> >> Similarly, staying at this directory, start system's Python 
> >> 
> >> python 
> >> 
> >> and at its prompt, do 
> >> 
> >>import autogen 
> >>autogen.pari_share() 
> >> 
> >> Post the result of the last 3 commands. 
> > 
> > 
> > '/usr/share/pari' 
> > 
> >> 
> >> 
> ok, this is all as expected. 
>
> >> --- 
> >> I suspect that cypari invokes system's Python rather than Sage's 
> >> Python at this point. 
> >> 
> >> To check this, let us try putting Sage's Python 1st in the PATH and 
> >> re-run the installation of Cypari. Thus, try the following: 
> >> 
> >> cd /srv/public/shared/sage/ 
> >> PATH=/srv/public/shared/sage/bin:$PATH ./sage -i cypari 
> >> 
> >> and tell us whether this worked or not... 
> > 
> > 
> > This worked! 
> OK, good. At least from this point on you should be able to continue 
> building, just by 
> typing 
>
>  make 
>
> The remaining question is whether the problem is reproducible. 
> That is, what happens if you try to re-install cypari wthout the PATH 
> hack, i.e. just by 
>
>   ./sage -f cypari 
>
> Does this work? If yes, then the problem (which in this case would be 
> that the installation of Pari/GP was not ready at the point building 
> of cypai kicked in) is gone, more or less. 
>
> If it doesn't then it's a problem I cannot really pin down to anything 
> in particular, and it appears very limited in scope, i.e. I can't 
> reproduce it on other machines... 
> Anyway, 
>
> PATH=/srv/public/shared/sage/bin:$PATH ./sage -i cypari 
>
> should allow you to proceed. 
>
> HTH 
> Dima 
>
> > 
> >> 
> >> 
> >> Thanks. 
> >> 
> >> 
> >> On Wed, Sep 11, 2019 at 10:49 AM Mariel Supina 
> >>  wrote: 
> >> > 
> >> > Attached is the output of 
> >> > 
> >> > set 
> >> > 
> >> > On Tuesday, September 10, 2019 at 7:16:23 PM UTC+2, Dima Pasechnik 
> wrote: 
> >> >> 
> >> >> On Tue, Sep 10, 2019 at 5:30 PM Mariel Supina 
> >> >>  wrote: 
> >> >> > 
> >> >> > On Tuesday, September 10, 2019 at 5:50:53 PM UTC+2, Dima Pasechnik 
> wrote: 
> >> >> >> 
> >> >> >> Thanks. OK, I see that you're supposed to be building Pari, 
> anyway, 
> >> >> >> amd then the rest should have worked. Strange. 
> >> >> >> 
> >> >> >> To make sure bulding Pari worked, could you do the following: 
> >> >> >> In the directory you're building Sage, 
> >> >> 
> >> >> as you are building in /srv/public/shared/sage/ everything appears 
> to 
> >> >> be in order. 
> >> >> 
> >> >> Something is telling cypari to ignore the Pari/GP already installed 
> in 
> >> >> /srv/public/shared/sage/local/ 
> >> >> and to use the system Pari/GP, which is not only incompatible, but 
> broken 
> >> >> (as /usr/share/pari/pari.desc is a part of the package, but it's 
> missing) too. 
> >> >> On the other hand I checked how cypari discovers the Pari/GP 
> installation, and 
> >> >> it appears it shoul

Re: [sage-release] Re: Sage 8.9.beta9 released

2019-09-11 Thread Mariel Supina


On Wednesday, September 11, 2019 at 12:18:37 PM UTC+2, Dima Pasechnik wrote:
>
> OK, thanks, let's do more debugging of cypari: 
>
>cd /srv/public/shared/sage/upstream 
>tar xf  cypari2-2.1.1.tar.gz 
>cd cypari2-2.1.1/ 
>
> now, start Sage's Python: 
>
>../../sage -python 
>
> and at its prompt, do 
>
>import autogen 
>autogen.pari_share()  


> Post the result of the last 3 commands. 
>

'/srv/public/shared/sage/local/share/pari'
 

>
> Similarly, staying at this directory, start system's Python 
>
> python 
>
> and at its prompt, do 
>
>import autogen 
>autogen.pari_share() 
>
> Post the result of the last 3 commands. 
>

'/usr/share/pari'
 

>
> --- 
> I suspect that cypari invokes system's Python rather than Sage's 
> Python at this point. 
>
> To check this, let us try putting Sage's Python 1st in the PATH and 
> re-run the installation of Cypari. Thus, try the following: 
>
> cd /srv/public/shared/sage/ 
> PATH=/srv/public/shared/sage/bin:$PATH ./sage -i cypari 
>
> and tell us whether this worked or not... 
>

This worked!
 

>
> Thanks. 
>
>
> On Wed, Sep 11, 2019 at 10:49 AM Mariel Supina 
> > wrote: 
> > 
> > Attached is the output of 
> > 
> > set 
> > 
> > On Tuesday, September 10, 2019 at 7:16:23 PM UTC+2, Dima Pasechnik 
> wrote: 
> >> 
> >> On Tue, Sep 10, 2019 at 5:30 PM Mariel Supina 
> >>  wrote: 
> >> > 
> >> > On Tuesday, September 10, 2019 at 5:50:53 PM UTC+2, Dima Pasechnik 
> wrote: 
> >> >> 
> >> >> Thanks. OK, I see that you're supposed to be building Pari, anyway, 
> >> >> amd then the rest should have worked. Strange. 
> >> >> 
> >> >> To make sure bulding Pari worked, could you do the following: 
> >> >> In the directory you're building Sage, 
> >> 
> >> as you are building in /srv/public/shared/sage/ everything appears to 
> >> be in order. 
> >> 
> >> Something is telling cypari to ignore the Pari/GP already installed in 
> >> /srv/public/shared/sage/local/ 
> >> and to use the system Pari/GP, which is not only incompatible, but 
> broken 
> >> (as /usr/share/pari/pari.desc is a part of the package, but it's 
> missing) too. 
> >> On the other hand I checked how cypari discovers the Pari/GP 
> installation, and 
> >> it appears it should work as expected. 
> >> 
> >> I cc the main authors of cypari package. 
> >> 
> >> Are you setting any environment variables by hand? No pre-set 
> SAGE_ROOT? 
> >> Or perhaps something 
> >> that you get by default, and this breaks things? 
> >> 
> >> Could you post the output of 
> >> 
> >>   set 
> >> 
> >> >  run 
> >> >> 
> >> >>   ./sage --gp --version 
> >> >> 
> >> >> and post the output. 
> >> > 
> >> > 
> >> >GP/PARI CALCULATOR Version 2.11.1 (released) 
> >> >amd64 running linux (x86-64/GMP-6.1.2 kernel) 64-bit 
> version 
> >> > compiled: Sep 10 2019, gcc version 6.3.0 20170516 (Debian 
> 6.3.0-18+deb9u1) 
> >> >  threading engine: single 
> >> > (readline not compiled in, extended help enabled) 
> >> > 
> >> > 
> >> >> 
> >> >> Also, please post the output of 
> >> >> 
> >> >>   echo 'default(datadir)' | ./sage --gp -qf 
> >> > 
> >> > 
> >> >  "/srv/public/shared/sage/local/share/pari" 
> >> > 
> >> >> 
> >> >> Also, at the same directory, start Sage's Python by typing 
> >> >> 
> >> >>   ./sage --python 
> >> >> 
> >> >> and at the Python's prompt, type the following 2 commands: 
> >> >> 
> >> >>   from distutils.spawn import find_executable 
> >> >>   find_executable("gp") 
> >> >> 
> >> >> and post the output. 
> >> > 
> >> > 
> >> > '/srv/public/shared/sage/local/bin/gp' 
> >> > 
> >> >> 
> >> >> 
> >> >> In the same directory, run 
> >> >> 
> >> >>   ls -l local/share/pari/pari.desc 

Re: [sage-release] Re: Sage 8.9.beta9 released

2019-09-10 Thread Mariel Supina


On Tuesday, September 10, 2019 at 5:50:53 PM UTC+2, Dima Pasechnik wrote:
>
> Thanks. OK, I see that you're supposed to be building Pari, anyway, 
> amd then the rest should have worked. Strange. 
>
> To make sure bulding Pari worked, could you do the following: 
> In the directory you're building Sage,  run 
>
>   ./sage --gp --version 
>
> and post the output. 


   GP/PARI CALCULATOR Version 2.11.1 (released)
   amd64 running linux (x86-64/GMP-6.1.2 kernel) 64-bit version
compiled: Sep 10 2019, gcc version 6.3.0 20170516 (Debian 
6.3.0-18+deb9u1)
 threading engine: single
(readline not compiled in, extended help enabled)

 

> Also, please post the output of 
>
>   echo 'default(datadir)' | ./sage --gp -qf 
>

 "/srv/public/shared/sage/local/share/pari"


> Also, at the same directory, start Sage's Python by typing 
>
>   ./sage --python 
>
> and at the Python's prompt, type the following 2 commands: 
>
>   from distutils.spawn import find_executable 
>   find_executable("gp") 
>
> and post the output. 
>

'/srv/public/shared/sage/local/bin/gp'
 

>
> In the same directory, run 
>
>   ls -l local/share/pari/pari.desc 
>
> and post the output. 
>
>
>
-rw-r--r-- 1 mjsupina ag_discgeom 1425197 Sep 10 14:55 
local/share/pari/pari.desc
 

> - 
>
> finally, please post the output of 
>
>   ls -l /usr/share/pari/pari.desc 
>
>
ls: Zugriff auf '/usr/share/pari/pari.desc' nicht möglich: Datei oder 
Verzeichnis nicht gefunden

(Translation to English: 
ls: Unable to access '/usr/share/pari/pari.desc': file or directory not 
found) 
 

> Thanks. 
>
> On Tue, Sep 10, 2019 at 3:07 PM Mariel Supina 
> > wrote: 
> > 
> > I have attached the output of ./configure --with-python=3. 
> > 
> > On Tuesday, September 10, 2019 at 3:53:06 PM UTC+2, Dima Pasechnik 
> wrote: 
> >> 
> >> On Tue, Sep 10, 2019 at 2:16 PM Mariel Supina 
> >>  wrote: 
> >> > 
> >> > Hi, 
> >> > 
> >> > On Tuesday, September 10, 2019 at 2:51:27 PM UTC+2, Dima Pasechnik 
> wrote: 
> >> >> 
> >> >> On Tue, Sep 10, 2019 at 1:36 PM Mariel Supina 
> >> >>  wrote: 
> >> >> > 
> >> >> > On Debian stretch, I get a compilation error making sage 
> 8.9.beta9. The problem is in the package "cypari", the relevant log is 
> attached: 
> >> >> 
> >> >> Are you upgrading? Building from scratch? 
> >> > 
> >> > 
> >> > I am building from scratch with python3. 
> >> > 
> >> >> 
> >> >> 
> >> >> The interesting line is 
> >> >> 
> >> >> error: [Errno 2] No such file or directory: 
> '/usr/share/pari/pari.desc' 
> >> >> 
> >> >> This appears to be related to 
> >> >> https://trac.sagemath.org/ticket/28242 
> >> >> Perhaps it ought to be improved. 
> >> > 
> >> > 
> >> > The compilation used to work fine on the machines, so that could be 
> it? 
> >> > 
> >> >> 
> >> >> 
> >> >> It looks like you're trying to use a system installation of Pari/GP, 
> rather 
> >> >> than build Sage's Pari. What parts of Pari (Pari-related packages?) 
> >> >> do you have on your Debian system? 
> >> > 
> >> > 
> >> > The computer on which I try to compile is maintained by my 
> department's IT, so I am not completely aware of all the packages that 
> might or might not be installed. 
> >> > 
> >> > How can I figure out which pari (and which packages) are installed? 
> >> 
> >> what is the output of 
> >> 
> >>   gp --version 
> > 
> > 
> >   GP/PARI CALCULATOR Version 2.9.1 (released) 
> >   amd64 running linux (x86-64/GMP-6.1.1 kernel) 64-bit version 
> >compiled: Dec  1 2016, gcc version 6.2.1 20161124 (Debian 
> 6.2.1-5) 
> >threading engine: pthread 
> > (readline v7.0 disabled, extended help enabled) 
> > 
> > 
> >> 
> >> 
> >> and of 
> >> 
> >>   echo 'default(datadir)' | gp -qf 
> > 
> > 
> > "/usr/share/pari" 
> > 
> >> 
> >> 
> >> And

Re: [sage-release] Re: Sage 8.9.beta9 released

2019-09-10 Thread Mariel Supina
I have attached the output of ./configure --with-python=3.

On Tuesday, September 10, 2019 at 3:53:06 PM UTC+2, Dima Pasechnik wrote:

> On Tue, Sep 10, 2019 at 2:16 PM Mariel Supina 
> > wrote: 
> > 
> > Hi, 
> > 
> > On Tuesday, September 10, 2019 at 2:51:27 PM UTC+2, Dima Pasechnik 
> wrote: 
> >> 
> >> On Tue, Sep 10, 2019 at 1:36 PM Mariel Supina 
> >>  wrote: 
> >> > 
> >> > On Debian stretch, I get a compilation error making sage 8.9.beta9. 
> The problem is in the package "cypari", the relevant log is attached: 
> >> 
> >> Are you upgrading? Building from scratch? 
> > 
> > 
> > I am building from scratch with python3. 
> > 
> >> 
> >> 
> >> The interesting line is 
> >> 
> >> error: [Errno 2] No such file or directory: '/usr/share/pari/pari.desc' 
> >> 
> >> This appears to be related to 
> >> https://trac.sagemath.org/ticket/28242 
> >> Perhaps it ought to be improved. 
> > 
> > 
> > The compilation used to work fine on the machines, so that could be it? 
> > 
> >> 
> >> 
> >> It looks like you're trying to use a system installation of Pari/GP, 
> rather 
> >> than build Sage's Pari. What parts of Pari (Pari-related packages?) 
> >> do you have on your Debian system? 
> > 
> > 
> > The computer on which I try to compile is maintained by my department's 
> IT, so I am not completely aware of all the packages that might or might 
> not be installed. 
> > 
> > How can I figure out which pari (and which packages) are installed? 
>
> what is the output of 
>
>   gp --version 
>

  GP/PARI CALCULATOR Version 2.9.1 (released)
  amd64 running linux (x86-64/GMP-6.1.1 kernel) 64-bit version
   compiled: Dec  1 2016, gcc version 6.2.1 20161124 (Debian 6.2.1-5)
   threading engine: pthread
(readline v7.0 disabled, extended help enabled)

 

>
> and of 
>
>   echo 'default(datadir)' | gp -qf 
>

"/usr/share/pari"
 

>
> And what is the output of 
>
>   which gp 
>

/usr/bin/gp
 

>
> Thanks. 
>
> >> 
> >> 
> >> Anyhow, Pari in Stretch is too old, but you should be able to use the 
> >> one from backports: 
> >> 
> >> https://packages.debian.org/stretch-backports/libpari-dev 
> > 
> > 
> > I am afraid that I do not have the rights to install libpari systemwide. 
> Hmm. 
> > 
> >> 
> >> 
> >> 
> >> Thanks 
> >> Dima 
> >> > 
> >> > Found local metadata for cypari-2.1.1 
> >> > Attempting to download package cypari2-2.1.1.tar.gz from mirrors 
> >> > 
> https://mirror.koddos.net/sagemath/spkg/upstream/cypari/cypari2-2.1.1.tar.gz 
> >> > 
> [..] 
> >> > cypari-2.1.1 
> >> >  
> >> > Setting up build directory for cypari-2.1.1 
> >> > Finished extraction 
> >> > Applying patches from ../patches... 
> >> > Applying ../patches/trashcan.patch 
> >> > patching file cypari2/gen.pxd 
> >> > patching file cypari2/gen.pyx 
> >> > Hunk #1 succeeded at 141 (offset 6 lines). 
> >> > patching file cypari2/pari_instance.pyx 
> >> >  
> >> > Host system: 
> >> > Linux ural 4.9.0-9-amd64 #1 SMP Debian 4.9.168-1+deb9u4 (2019-07-19) 
> x86_64 GNU/Linux 
> >> >  
> >> > C compiler: gcc 
> >> > C compiler version: 
> >> > Using built-in specs. 
> >> > COLLECT_GCC=gcc 
> >> > COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper 
> >> > Target: x86_64-linux-gnu 
> >> > Configured with: ../src/configure -v --with-pkgversion='Debian 
> 6.3.0-18+deb9u1' --with-bugurl=file:///usr/share/doc/gcc-6/README.Bugs 
> --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr 
> --program-suffix=-6 --program-prefix=x86_64-linux-gnu- --enable-shared 
> --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext 
> --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ 
> --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes 
> --with-default-libstdcxx-abi=new --enable-gnu-unique-object 
> --

Re: [sage-release] Re: Sage 8.9.beta9 released

2019-09-10 Thread Mariel Supina
Hi,

On Tuesday, September 10, 2019 at 2:51:27 PM UTC+2, Dima Pasechnik wrote:
>
> On Tue, Sep 10, 2019 at 1:36 PM Mariel Supina 
> > wrote: 
> > 
> > On Debian stretch, I get a compilation error making sage 8.9.beta9. The 
> problem is in the package "cypari", the relevant log is attached: 
>
> Are you upgrading? Building from scratch? 
>

I am building from scratch with python3.
 

>
> The interesting line is 
>
> error: [Errno 2] No such file or directory: '/usr/share/pari/pari.desc' 
>
> This appears to be related to 
> https://trac.sagemath.org/ticket/28242 
> Perhaps it ought to be improved. 
>

The compilation used to work fine on the machines, so that could be it?
 

>
> It looks like you're trying to use a system installation of Pari/GP, 
> rather 
> than build Sage's Pari. What parts of Pari (Pari-related packages?) 
> do you have on your Debian system? 
>

The computer on which I try to compile is maintained by my department's IT, 
so I am not completely aware of all the packages that might or might not be 
installed. 

How can I figure out which pari (and which packages) are installed?
 

>
> Anyhow, Pari in Stretch is too old, but you should be able to use the 
> one from backports: 
>
> https://packages.debian.org/stretch-backports/libpari-dev 
> <https://www.google.com/url?q=https%3A%2F%2Fpackages.debian.org%2Fstretch-backports%2Flibpari-dev&sa=D&sntz=1&usg=AFQjCNHOZ3kfzejSaSD_I-8EBzCVg_IW6w>


I am afraid that I do not have the rights to install libpari systemwide. 
Hmm.
 

>
>
> Thanks 
> Dima 
> > 
> > Found local metadata for cypari-2.1.1 
> > Attempting to download package cypari2-2.1.1.tar.gz from mirrors 
> > 
> https://mirror.koddos.net/sagemath/spkg/upstream/cypari/cypari2-2.1.1.tar.gz 
> > [..] 
> > cypari-2.1.1 
> >  
> > Setting up build directory for cypari-2.1.1 
> > Finished extraction 
> > Applying patches from ../patches... 
> > Applying ../patches/trashcan.patch 
> > patching file cypari2/gen.pxd 
> > patching file cypari2/gen.pyx 
> > Hunk #1 succeeded at 141 (offset 6 lines). 
> > patching file cypari2/pari_instance.pyx 
> >  
> > Host system: 
> > Linux ural 4.9.0-9-amd64 #1 SMP Debian 4.9.168-1+deb9u4 (2019-07-19) 
> x86_64 GNU/Linux 
> >  
> > C compiler: gcc 
> > C compiler version: 
> > Using built-in specs. 
> > COLLECT_GCC=gcc 
> > COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper 
> > Target: x86_64-linux-gnu 
> > Configured with: ../src/configure -v --with-pkgversion='Debian 
> 6.3.0-18+deb9u1' --with-bugurl=file:///usr/share/doc/gcc-6/README.Bugs 
> --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr 
> --program-suffix=-6 --program-prefix=x86_64-linux-gnu- --enable-shared 
> --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext 
> --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ 
> --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes 
> --with-default-libstdcxx-abi=new --enable-gnu-unique-object 
> --disable-vtable-verify --enable-libmpx --enable-plugin 
> --enable-default-pie --with-system-zlib --disable-browser-plugin 
> --enable-java-awt=gtk --enable-gtk-cairo 
> --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-6-amd64/jre --enable-java-home 
> --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-6-amd64 
> --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-6-amd64 
> --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar 
> --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch 
> --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 
> --enable-multilib --with-tune=generic --enable-checking=release 
> --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu 
> > Thread model: posix 
> > gcc version 6.3.0 20170516 (Debian 6.3.0-18+deb9u1) 
> >  
> > Package 'cypari' is currently not installed 
> > No legacy uninstaller found for 'cypari'; nothing to do 
> > Installing cypari-2.1.1 
> > Installing package cypari2 using pip2 
> > Ignoring indexes: https://pypi.org/simple 
> > Created temporary directory: /tmp/pip-ephem-wheel-cache-EMVpJz 
> > Created temporary directory: /tmp/pip-req-tracker-wfmzIV 
> > Created requirements tracker '/tmp/pip-req-tracker-wfmzI

[sage-release] Re: Sage 8.9.beta9 released

2019-09-10 Thread Mariel Supina
On Debian stretch, I get a compilation error making sage 8.9.beta9. The 
problem is in the package "cypari", the relevant log is attached:

Found local metadata for cypari-2.1.1
Attempting to download package cypari2-2.1.1.tar.gz from mirrors
https://mirror.koddos.net/sagemath/spkg/upstream/cypari/cypari2-2.1.1.tar.gz
[..]
cypari-2.1.1

Setting up build directory for cypari-2.1.1
Finished extraction
Applying patches from ../patches...
Applying ../patches/trashcan.patch
patching file cypari2/gen.pxd
patching file cypari2/gen.pyx
Hunk #1 succeeded at 141 (offset 6 lines).
patching file cypari2/pari_instance.pyx

Host system:
Linux ural 4.9.0-9-amd64 #1 SMP Debian 4.9.168-1+deb9u4 (2019-07-19) x86_64 
GNU/Linux

C compiler: gcc
C compiler version:
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Debian 
6.3.0-18+deb9u1' --with-bugurl=file:///usr/share/doc/gcc-6/README.Bugs 
--enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr 
--program-suffix=-6 --program-prefix=x86_64-linux-gnu- --enable-shared 
--enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext 
--enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ 
--enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes 
--with-default-libstdcxx-abi=new --enable-gnu-unique-object 
--disable-vtable-verify --enable-libmpx --enable-plugin 
--enable-default-pie --with-system-zlib --disable-browser-plugin 
--enable-java-awt=gtk --enable-gtk-cairo 
--with-java-home=/usr/lib/jvm/java-1.5.0-gcj-6-amd64/jre --enable-java-home 
--with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-6-amd64 
--with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-6-amd64 
--with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar 
--with-target-system-zlib --enable-objc-gc=auto --enable-multiarch 
--with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 
--enable-multilib --with-tune=generic --enable-checking=release 
--build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 6.3.0 20170516 (Debian 6.3.0-18+deb9u1) 

Package 'cypari' is currently not installed
No legacy uninstaller found for 'cypari'; nothing to do
Installing cypari-2.1.1
Installing package cypari2 using pip2
Ignoring indexes: https://pypi.org/simple
Created temporary directory: /tmp/pip-ephem-wheel-cache-EMVpJz
Created temporary directory: /tmp/pip-req-tracker-wfmzIV
Created requirements tracker '/tmp/pip-req-tracker-wfmzIV'
Created temporary directory: /tmp/pip-install-HkyCL2
Processing /srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src
  Created temporary directory: /tmp/pip-req-build-MoH_HZ
  Added 
file:///srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src to 
build tracker '/tmp/pip-req-tracker-wfmzIV'
  Running setup.py (path:/tmp/pip-req-build-MoH_HZ/setup.py) egg_info for 
package from 
file:///srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src
Running command python setup.py egg_info
running egg_info
creating pip-egg-info/cypari2.egg-info
writing requirements to pip-egg-info/cypari2.egg-info/requires.txt
writing pip-egg-info/cypari2.egg-info/PKG-INFO
writing top-level names to pip-egg-info/cypari2.egg-info/top_level.txt
writing dependency_links to 
pip-egg-info/cypari2.egg-info/dependency_links.txt
writing manifest file 'pip-egg-info/cypari2.egg-info/SOURCES.txt'
error: [Errno 2] No such file or directory: '/usr/share/pari/pari.desc'
Cleaning up...
  Removing source in /tmp/pip-req-build-MoH_HZ
Removed 
file:///srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src 
from build tracker '/tmp/pip-req-tracker-wfmzIV'
Removed build tracker '/tmp/pip-req-tracker-wfmzIV'
Command "python setup.py egg_info" failed with error code 1 in 
/tmp/pip-req-build-MoH_HZ/
Exception information:
Traceback (most recent call last):
  File 
"/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/cli/base_command.py",
 
line 143, in main
status = self.run(options, args)
  File 
"/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/commands/install.py",
 
line 318, in run
resolver.resolve(requirement_set)
  File 
"/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/resolve.py",
 
line 102, in resolve
self._resolve_one(requirement_set, req)
  File 
"/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/resolve.py",
 
line 256, in _resolve_one
abstract_dist = self._get_abstract_dist_for(req_to_install)
  File 
"/srv/public/sha