[sage-release] Re: Sage 9.4.beta0 released

[Matthias Köppe]

On Wednesday, May 26, 2021 at 2:13:19 PM UTC-7 Volker Braun wrote:

> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html 
>
> 6aa4ecee16 (tag: 9.4.beta0, trac/develop) Updated SageMath version to 
> 9.4.beta0
>

Thanks, Volker, for preparing the new beta. When you have a moment, could 
you react to the discussion regarding the 9.4 release cycle over in 
sage-devel?


All: Here are some comments:

> 16f52682ae Trac #31838: gfortran: Accept system gfortran 11
> 05c2ecadc5 Trac #29703: Upgrade gcc to 10.3 (latest 10.x)

As a result of these tickets, on macOS with homebrew, it should no longer 
be necessary to pin gcc to version 10 now. Likely a "make distclean" to 
trigger a full rebuild will be necessary after switching to the latest 
toolchain.

> 3859440591 <(385)%20944-0591> Trac #30551: Drop Python 3.6 support

Unfortunately, this ticket contained a bad change to sage-bootstrap-python.
If you are on a system with python 3.6, you might need to merge 
https://trac.sagemath.org/ticket/31860, which reverts this change.


>

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Re: [sage-release] Sage 9.4.beta0 released

[Matthias Köppe]

On Thursday, May 27, 2021 at 12:11:11 PM UTC-7 jus...@mac.com wrote:

>
> > On May 26, 2021, at 14:13, Volker Braun  wrote: 
> > 
> > As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html 
>
> Built from a fresh clone of the develop tree on macOS 10.15.7 (8-core Core 
> i9 2019 MBP). No problems during build. 
>
> [...] At the end, the following was printed: 
> Pytest is not installed, skip checking tests that rely on it. 
>
> Have not heard of this. Should it be/have been installed? 
>
>
This was introduced in https://trac.sagemath.org/ticket/31103




 

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[sage-release] Re: Sage 9.4.beta0 released

[Matthias Köppe]

On Thursday, May 27, 2021 at 5:55:39 AM UTC-7 Sébastien Labbé wrote:

> I have python3.6 and python3.8 installed on my system:
> [...]
> My python3.8 has the above librairies available. But, it seems that my 
> python3.8 is not picked up by the configure script:
>
>
See 
https://wiki.sagemath.org/ReleaseTours/sage-9.2#Selecting_a_system_Python_to_use_for_Sage.27s_venv
 

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[sage-release] Re: Sage 9.3 released

[Matthias Köppe]

On Monday, May 10, 2021 at 2:24:54 PM UTC-7 Volker Braun wrote:

> The "master" git branch has been updated to Sage-9.3. As always, you can 
> get the latest beta version from the "develop" git branch. Alternatively, 
> the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html
>
> d6c5cd9be7 (tag: 9.3, trac/master, trac/develop) Updated SageMath version 
> to 9.3
>

Thanks for preparing the release, Volker!

Now that the Sage documentation has been updated (thanks, Harald!), it 
would be good to update https://wiki.sagemath.org/ReleaseTours/sage-9.3 
with links to the reference manual.

I have started a series of tweets about the new release. 
https://twitter.com/mkoeppe_math/status/1391999548571021313?s=20
Join and help spreading the word about what's new in the project and our 
community.




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[sage-release] Re: Sage 9.3.rc5 released

[Matthias Köppe]

On Friday, April 30, 2021 at 4:13:29 PM UTC-7 Volker Braun wrote:

> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html 
>
> c27d4d6803 (tag: 9.3.rc5, trac/develop) Updated SageMath version to 9.3.rc5
>

Thanks for preparing the new release candidate.

Following up on my previous summary of GH Actions runs for 9.3.rc2 in 
https://groups.google.com/g/sage-release/c/6WjKQt_e_B8/m/dpx1qILOCwAJ:

First time in a long time that the *cygwin-standard* build on GH Actions 
ran through. We have not done anything to fix 
https://trac.sagemath.org/ticket/31565 ("Build still non-portable despite 
SAGE_FAT_BINARY=yes because of numpy 
"), so this could either be a 
result of chance, or due to changes in Cygwin or changes to how GH Actions 
allocates machines. There are a number of doctest failures 
(https://github.com/sagemath/sage/runs/2485275132) that result from running 
the doctests without building the documentation first. Overall looking good.

The issue with *fedora-34* system NTL 
(https://trac.sagemath.org/ticket/31624), first reported for 9.3.beta8, has 
become critical now that Fedora 34 has been released. I would suggest that 
we make an emergency fix to the ntl spkg-configure.m4 so that it rejects 
system NTL if we reject system gcc.


 

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Re: [sage-release] Sage 9.3.rc5 released

[Matthias Köppe]

I have opened https://trac.sagemath.org/ticket/31786 
Meta-ticket: Support gcc 11 

This should be for Sage 9.4

On Saturday, May 1, 2021 at 1:41:40 PM UTC-7 François Bissey wrote:

>
>
> > On 2/05/2021, at 06:57, Dima Pasechnik  wrote:
> > 
> > I'd rather try gcc 11 instead.
>
> If you want. We already have an issue in compiling fplll
> https://github.com/fplll/fplll/issues/462
> and sage itself doesn’t compile because of some issue in lcalc
> as far as I can see.
> https://github.com/cschwan/sage-on-gentoo/issues/634
>
> François

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Re: [sage-release] Re: Sage 9.3.rc5 released

[Matthias Köppe]

On Saturday, May 1, 2021 at 11:57:38 AM UTC-7 Dima Pasechnik wrote:

>
> On Sat, 1 May 2021, 15:20 Enrique Artal,  wrote:
>
>> I have tried to compile it in Fedora 34, I know it is a very recent 
>> release and problems would be expected. The first one is that F34 uses 
>> gcc11 and it seems to be incompatible with sage, so when installing it uses 
>> gcc 9.2 package. [...]
>> ImportError: /usr/local/sage/local/lib/libstdc++.so.6: version 
>> `GLIBCXX_3.4.29' not found (required by /lib64/libvmaf.so.0)
>>
>
> this is a C++ incompatibility issue - if you insists on using gcc 9 you 
> might have to supply all the C++ libs needed by Sage rebuilt with gcc 9.
>
>>
>>
We should update the gcc spkg to use the latest 10.x gcc.
This is https://trac.sagemath.org/ticket/29703


 

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Re: [sage-release] Sage 9.3.rc4 released

[Matthias Köppe]

As previously noted, see https://trac.sagemath.org/ticket/31348

On Monday, April 19, 2021 at 2:13:45 AM UTC-7 Dima Pasechnik wrote:

> Something is a bit broken in your toolchain.
> Did you build with Homebrew packages and then forgot to
> source .homebrew-build-env ?
> (which might also be needed for some tests, IMHO)
>
> On Sun, Apr 18, 2021 at 7:58 PM Kenji Iohara  wrote:
> >
> > On Mac OS 11.2.3., the compilation from the first built worked. But for 
> ptestlong, I had
> >
> > 
> --
> > sage -t --long --random-seed=0 src/sage/misc/sageinspect.py # 35 
> doctests failed
> > sage -t --long --random-seed=0 src/sage/misc/sagedoc.py # 2 doctests 
> failed
> > sage -t --long --random-seed=0 src/sage/tests/cmdline.py # 4 doctests 
> failed
> > sage -t --long --random-seed=0 src/sage/graphs/connectivity.pyx # 2 
> doctests failed
> > sage -t --long --random-seed=0 src/sage/misc/cachefunc.pyx # 54 doctests 
> failed
> > sage -t --long --random-seed=0 src/sage/repl/ipython_extension.py # 2 
> doctests failed
> > sage -t --long --random-seed=0 src/sage/misc/cython.py # 20 doctests 
> failed
> > sage -t --long --random-seed=0 src/sage/parallel/decorate.py # 2 
> doctests failed
> > sage -t --long --random-seed=0 src/sage/rings/tate_algebra_ideal.pyx # 6 
> doctests failed
> > sage -t --long --random-seed=0 src/sage/features/__init__.py # 2 
> doctests failed
> > sage -t --long --random-seed=0 src/sage/cpython/cython_metaclass.pyx # 4 
> doctests failed
> > sage -t --long --random-seed=0 src/sage/misc/superseded.py # 2 doctests 
> failed
> > sage -t --long --random-seed=0 src/sage/structure/factory.pyx # 8 
> doctests failed
> > sage -t --long --random-seed=0 
> src/sage/rings/polynomial/ore_polynomial_element.pyx # 6 doctests failed
> > sage -t --long --random-seed=0 src/sage/ext/memory_allocator.pxd # 3 
> doctests failed
> > sage -t --long --random-seed=0 src/sage/ext/memory_allocator.pyx # 6 
> doctests failed
> > sage -t --long --random-seed=0 src/sage/cpython/getattr.pyx # 4 doctests 
> failed
> > sage -t --long --random-seed=0 src/sage/misc/lazy_attribute.pyx # 3 
> doctests failed
> > sage -t --long --random-seed=0 src/sage/libs/pynac/pynac.pxd # 1 doctest 
> failed
> > sage -t --long --random-seed=0 src/sage/misc/inherit_comparison.pyx # 5 
> doctests failed
> > sage -t --long --random-seed=0 src/sage/misc/session.pyx # 2 doctests 
> failed
> > sage -t --long --random-seed=0 src/sage/arith/long.pxd # 14 doctests 
> failed
> > sage -t --long --random-seed=0 src/sage/docs/instancedoc.pyx # 4 
> doctests failed
> > sage -t --long --random-seed=0 src/sage/cpython/wrapperdescr.pxd # 6 
> doctests failed
> > sage -t --long --random-seed=0 src/sage/misc/nested_class.pyx # 6 
> doctests failed
> > sage -t --long --random-seed=0 src/sage/rings/integer_fake.pxd # 1 
> doctest failed
> > sage -t --long --random-seed=0 src/sage/cpython/string.pyx # 1 doctest 
> failed
> > sage -t --long --random-seed=0 src/sage/repl/load.py # 2 doctests failed
> > sage -t --long --random-seed=0 src/sage/structure/element.pyx # 43 
> doctests failed
> > sage -t --long --random-seed=0 
> src/sage/graphs/graph_decompositions/fast_digraph.pyx # 5 doctests failed
> > --
> >
> > Here is
> >
> > --
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> https://groups.google.com/d/msgid/sage-release/1A7891E3-B69C-4F70-8FB5-D7AF6BDAED72%40gmail.com
> .
> >
> > 18/04/2021 11:06、Volker Braun のメール:
> >
> > As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html
> >
> >
> > de32db6991 (tag: 9.3.rc4, trac/develop) Updated SageMath version to 
> 9.3.rc4
> > e698b796f5 Trac #31671: add gc.collect() to the memleak test from #31313
> > 59b6d201be Trac #31648: Disable jedi for tab-completion
> > f38eadda9c (tag: 9.3.rc3) Updated SageMath version to 9.3.rc3
> >
> >
> > --
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> >
> >
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[sage-release] Re: Sage 9.3.rc2 released

[Matthias Köppe]

It's an annoying shortcoming of our build system. This particular problem 
is explained in https://trac.sagemath.org/ticket/29711, on which you are 
already cc'd. Overall I agree that possible remedies for failures in 
incremental builds are not sufficiently explained anywhere in our 
documentation. 

On Saturday, April 10, 2021 at 5:18:38 PM UTC-7 emanuel.c...@gmail.com 
wrote:

> Thanks. This seems to have done it.
>
> One more question ; how should I have divined this ? I can't remember 
> reading anything about this in the build instructions nor in the 
> developer's guide...
>
> Le dimanche 11 avril 2021 à 00:16:59 UTC+2, matthia...@gmail.com a écrit :
>
>> On Saturday, April 10, 2021 at 1:23:53 PM UTC-7 emanuel.c...@gmail.com 
>> wrote:
>>
>>> It seems that something (what ?) is not updated in the build process 
>>> scripts and still points to the Singular version used in 9.3.rc0. I 
>>> suppose that rebuildig would fix the problem [...]
>>>
>>
>> It suffices to rebuild sagelib. Use "make sagelib-clean" and then proceed 
>> with a normal build.
>>
>>
>>  
>>
>

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[sage-release] Re: Sage 9.3.rc2 released

[Matthias Köppe]

On Saturday, April 10, 2021 at 1:23:53 PM UTC-7 emanuel.c...@gmail.com 
wrote:

> It seems that something (what ?) is not updated in the build process 
> scripts and still points to the Singular version used in 9.3.rc0. I 
> suppose that rebuildig would fix the problem [...]
>

It suffices to rebuild sagelib. Use "make sagelib-clean" and then proceed 
with a normal build.


 

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[sage-release] Re: Sage 9.3.rc2 released

[Matthias Köppe]

I have opened tickets for some but not all of these issues:

#31624 <https://trac.sagemath.org/ticket/31624>
fedora-34-standard: eclib, singular build failures with system ntl 
<https://trac.sagemath.org/ticket/31624>

#31623 <https://trac.sagemath.org/ticket/31623>
homebrew-macos-10.15-standard-default: Doctest errors related to singular 
<https://trac.sagemath.org/ticket/31623>

#31622 <https://trac.sagemath.org/ticket/31622>
conda-forge-macos: RuntimeError from qqbar cmp_elements_with_same_minpoly 
<https://trac.sagemath.org/ticket/31622>

#31621 <https://trac.sagemath.org/ticket/31621>
ubuntu-groovy-standard: numerics-related sage testsuite errors 
<https://trac.sagemath.org/ticket/31621>

Help is needed...

On Thursday, April 8, 2021 at 9:27:54 AM UTC-7 Matthias Köppe wrote:

> On Wednesday, April 7, 2021 at 10:29:29 AM UTC-7 Matthias Köppe wrote:
>
>> On Tuesday, April 6, 2021 at 3:33:00 PM UTC-7 Volker Braun wrote:
>>
>>> As always, you can get the latest beta version from the "develop" git 
>>> branch. Alternatively, the self-contained source tarball is at 
>>> http://www.sagemath.org/download-latest.html 
>>>
>>> 824f9cccaf (tag: 9.3.rc2, trac/develop) Updated SageMath version to 
>>> 9.3.rc2
>>>
>>
>> Tests on various platforms are running at:
>> - https://github.com/sagemath/sage/actions/runs/724020346 (Linux and 
>> macOS)
>> - https://github.com/sagemath/sage/actions/runs/724020349 (Cygwin)
>> - https://github.com/sagemath/sage/actions/runs/724020348 (optional 
>> packages)
>>
>
> Here's a summary of these runs. I am comparing to 9.3.beta8, for which the 
> results were summarized in:
> - https://groups.google.com/g/sage-release/c/KdSKg6RdZok/m/zM2Bhfm0AwAJ, 
> - https://groups.google.com/g/sage-release/c/KdSKg6RdZok/m/75iHB1nYAwAJ,
> - https://groups.google.com/g/sage-release/c/KdSKg6RdZok/m/3Fkd7K1aAgAJ, 
> - https://groups.google.com/g/sage-release/c/KdSKg6RdZok/m/GXfB1rW1AgAJ:
>
> 9.3.beta8> 
> *ubuntu*-{trusty,xenial,bionic,focal,groovy,hirsute}-{minimal,standard}: 
> Clean
> 9.3.beta8> *debian*-{jessie,stretch,buster,bullseye,sid}-{minimal,standard}: 
> Clean
> 9.3.beta8> ... with the exception of:
> 9.3.beta8> {debian-bullseye,ubuntu-groovy}-standard: cvxopt testsuite 
> errors, *numerics-related sage testsuite errors*
> 9.3.beta8> (is system BLAS feeling OK??)
>
> The numerics failures on debian-bullseye have disappeared (or perhaps it 
> is processor dependent, and we were luckier in this run), but show up in 
> debian-sid this time. 
> *The numerics failures on **ubuntu-groovy are still present. **Could 
> someone please help by taking a look at these numerics errors on?*
> Everything else is unchanged in 9.3.rc2 (with some more results in thanks 
> to #31502). 
>
> 9.3.beta8> *linuxmint*-17-{minimal,standard}: *Doctest errors from 
> "setlocale" output*
> 9.3.beta8> linuxmint-{18,19,19.3,20.1}-{minimal,standard}: Clean
>
> Unchanged in 9.3.rc2. GH Actions running out of disk space in 
> linuxmint-20.1-standard - despite #31502.
>
> 9.3.beta8> *fedora*-26-minimal, centos-7-minimal, centos-7-i386-minimal: 
> openssl problem
>
> fedora-26-minimal and centos-7-minimal are clean now, thanks to 
> https://trac.sagemath.org/ticket/31439
>
> 9.3.beta8> fedora-{26,27,29,30,31,32,33}-standard: Clean
> 9.3.beta8> fedora-{27,28,29,30,31,32,33}-minimal: Clean
> 9.3.beta8> fedora-28-standard: 
> 9.3.beta8> - cvxopt testsuite errors
> 9.3.beta8> - src/sage/rings/polynomial/groebner_fan.py # 3 doctests failed
> 9.3.beta8> - *src/sage/rings/real_mpfr.pyx # Killed due to abort*
>
> *fedora-28-standard:* *Similar but not the same failures in 9.3.rc2*
>
> 9.3.beta8> fedora-34-standard:
> 9.3.beta8>   [eclib-20190909]   /usr/bin/ld: /usr/lib64/*libntl.so: 
> undefined reference* to 
> `std::__exception_ptr::exception_ptr::_M_release()@CXXABI_1.3.13'
>
> *fedora-34-standard eclib problem is unchanged in 9.3.rc2, and also issues 
> with ntl show up in singular*
>
> 9.3.beta8> *centos*-7-standard: [dochtml] ImportError: /lib64/*libz.so.1: 
> version `ZLIB_1.2.9' not found* (required by 
> /sage/local/lib/libpng16.so.16)
>
> Unchanged in 9.3.rc2
>
> 9.3.beta8> centos-8-{minimal,standard}: Clean
>
> 9.3.beta8> *gentoo*-{minimal,standard}: Clean
> 9.3.beta8> gentoo-python3.7-{minimal,standard}: Clean
>
> *New doctest failures *for all of these from linker messages - 
> https://trac.sagemath.org/ticket/31578
>
> 9.3.beta8> *archlinux*-latest-{minimal,standard}: Clean
>
> Unchanged in 9.3.rc2
>
> 9.3.beta8> *slackware*-14.2-{mi

[sage-release] Re: Sage 9.3.rc2 released

[Matthias Köppe]

On Wednesday, April 7, 2021 at 10:29:29 AM UTC-7 Matthias Köppe wrote:

> On Tuesday, April 6, 2021 at 3:33:00 PM UTC-7 Volker Braun wrote:
>
>> As always, you can get the latest beta version from the "develop" git 
>> branch. Alternatively, the self-contained source tarball is at 
>> http://www.sagemath.org/download-latest.html 
>>
>> 824f9cccaf (tag: 9.3.rc2, trac/develop) Updated SageMath version to 
>> 9.3.rc2
>>
>
> Tests on various platforms are running at:
> - https://github.com/sagemath/sage/actions/runs/724020346 (Linux and 
> macOS)
> - https://github.com/sagemath/sage/actions/runs/724020349 (Cygwin)
> - https://github.com/sagemath/sage/actions/runs/724020348 (optional 
> packages)
>

Here's a summary of these runs. I am comparing to 9.3.beta8, for which the 
results were summarized in:
- https://groups.google.com/g/sage-release/c/KdSKg6RdZok/m/zM2Bhfm0AwAJ, 
- https://groups.google.com/g/sage-release/c/KdSKg6RdZok/m/75iHB1nYAwAJ,
- https://groups.google.com/g/sage-release/c/KdSKg6RdZok/m/3Fkd7K1aAgAJ, 
- https://groups.google.com/g/sage-release/c/KdSKg6RdZok/m/GXfB1rW1AgAJ:

9.3.beta8> 
*ubuntu*-{trusty,xenial,bionic,focal,groovy,hirsute}-{minimal,standard}: 
Clean
9.3.beta8> *debian*-{jessie,stretch,buster,bullseye,sid}-{minimal,standard}: 
Clean
9.3.beta8> ... with the exception of:
9.3.beta8> {debian-bullseye,ubuntu-groovy}-standard: cvxopt testsuite 
errors, *numerics-related sage testsuite errors*
9.3.beta8> (is system BLAS feeling OK??)

The numerics failures on debian-bullseye have disappeared (or perhaps it is 
processor dependent, and we were luckier in this run), but show up in 
debian-sid this time. 
*The numerics failures on **ubuntu-groovy are still present. **Could 
someone please help by taking a look at these numerics errors on?*
Everything else is unchanged in 9.3.rc2 (with some more results in thanks 
to #31502). 

9.3.beta8> *linuxmint*-17-{minimal,standard}: *Doctest errors from 
"setlocale" output*
9.3.beta8> linuxmint-{18,19,19.3,20.1}-{minimal,standard}: Clean

Unchanged in 9.3.rc2. GH Actions running out of disk space in 
linuxmint-20.1-standard - despite #31502.

9.3.beta8> *fedora*-26-minimal, centos-7-minimal, centos-7-i386-minimal: 
openssl problem

fedora-26-minimal and centos-7-minimal are clean now, thanks to 
https://trac.sagemath.org/ticket/31439

9.3.beta8> fedora-{26,27,29,30,31,32,33}-standard: Clean
9.3.beta8> fedora-{27,28,29,30,31,32,33}-minimal: Clean
9.3.beta8> fedora-28-standard: 
9.3.beta8> - cvxopt testsuite errors
9.3.beta8> - src/sage/rings/polynomial/groebner_fan.py # 3 doctests failed
9.3.beta8> - *src/sage/rings/real_mpfr.pyx # Killed due to abort*

*fedora-28-standard:* *Similar but not the same failures in 9.3.rc2*

9.3.beta8> fedora-34-standard:
9.3.beta8>   [eclib-20190909]   /usr/bin/ld: /usr/lib64/*libntl.so: 
undefined reference* to 
`std::__exception_ptr::exception_ptr::_M_release()@CXXABI_1.3.13'

*fedora-34-standard eclib problem is unchanged in 9.3.rc2, and also issues 
with ntl show up in singular*

9.3.beta8> *centos*-7-standard: [dochtml] ImportError: /lib64/*libz.so.1: 
version `ZLIB_1.2.9' not found* (required by /sage/local/lib/libpng16.so.16)

Unchanged in 9.3.rc2

9.3.beta8> centos-8-{minimal,standard}: Clean

9.3.beta8> *gentoo*-{minimal,standard}: Clean
9.3.beta8> gentoo-python3.7-{minimal,standard}: Clean

*New doctest failures *for all of these from linker messages 
- https://trac.sagemath.org/ticket/31578

9.3.beta8> *archlinux*-latest-{minimal,standard}: Clean

Unchanged in 9.3.rc2

9.3.beta8> *slackware*-14.2-{minimal,standard}: Clean

Unchanged in 9.3.rc2

9.3.beta8> *conda-forge*-minimal: *Error building package python3-3.9.1*
9.3.beta8> *conda-forge*-standard: *Sage does not accept system python3*

Unchanged in 9.3.rc2

9.3.beta8> *ubuntu-*{bionic,focal}*-i386*-minimal: [openssl-3.0.0-alpha11] 
/usr/include/stdio.h:27:10: fatal error: bits/libc-header-start.h: No such 
file or directory
9.3.beta8> *debian*-buster-*i386*-minimal: likewise
9.3.beta8> debian-buster-i386-standard: Clean except for
9.3.beta8> - src/sage/*parallel/decorate.py* # 1 doctest failed
9.3.beta8> - src/sage/schemes/*elliptic_curves/ell_field.py* # 1 doctest 
failed
 

9.3.beta8> *homebrew-macos-10.15**-minimal**-xcode_11.7* (
https://github.com/sagemath/sage/runs/2051746258): Clean except for:
9.3.beta8> sage -t --random-seed=0 src/sage/geometry/polyhedron/base.py  # 
1 doctest failed (*get_memory_usage*)
9.3.beta8> sage -t --random-seed=0 src/sage/interfaces/gap.py  # 1 doctest 
failed
9.3.beta8> (File "src/sage/interfaces/*gap*.py", line 482, in 
sage.interfaces.gap.Gap_generic._read_in_file_command)

9.3.beta8> *-standard-default* likewise

*New errors that appear to be related to Singular!*
*https://github.com/sagemath/sage/runs/2282411164*
*s

Re: [sage-release] Sage 9.3.rc2 released

[Matthias Köppe]

>From the log:
- many instances of fatal error: 'gmp.h' file not found
- many instances of 'ld: library not found for -lmpfr'
This is https://trac.sagemath.org/ticket/31348
As a workaround, it may help to run "make ptestlong" in the shell after 
using ". .homebrew-build-env"




On Wednesday, April 7, 2021 at 5:00:22 PM UTC-7 Kenji Iohara wrote:

> On mac 0S 11.2.3, I could built Sage from the very beginning but make 
> ptestlong failed. 
>

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[sage-release] Re: Sage 9.3.rc2 released

[Matthias Köppe]

On Tuesday, April 6, 2021 at 3:33:00 PM UTC-7 Volker Braun wrote:

> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html 
>
> 824f9cccaf (tag: 9.3.rc2, trac/develop) Updated SageMath version to 9.3.rc2
>

Thanks, Volker, for the new release candidate! Looks like we are getting 
closer to a working release.

Tests on various platforms are running at:
- https://github.com/sagemath/sage/actions/runs/724020346 (Linux and macOS)
- https://github.com/sagemath/sage/actions/runs/724020349 (Cygwin)
- https://github.com/sagemath/sage/actions/runs/724020348 (optional 
packages)

*All: *We do not have working automatic tests for the *Windows Subsystem 
for Linux* platforms (WSL1 and WSL2). If you have access to a machine 
running Windows 10, *testing on these platforms will be very helpful. 
*(https://trac.sagemath.org/ticket/31612 
(*needs review*) may or may not be needed.)

*Volker: *Repeating my suggestion in 
https://trac.sagemath.org/ticket/22657#comment:10 (to which I have not 
received a reaction yet), could you please run the *binary building scripts* 
for this (or the next) release candidate so that developers can test 
whether the built binaries work -- in particular, whether they are portable 
between processor variants.

*Volker: *I would like to see a number of "workhorse" tickets merged in the 
next release candidate:
- https://trac.sagemath.org/ticket/31592 - another fix to the Singular 
build scripts, fixes a reported build failure
- https://trac.sagemath.org/ticket/31496 - removes a message from the 
configure output with big potential to confuse users
- https://trac.sagemath.org/ticket/31554 and 
https://trac.sagemath.org/ticket/31479 - symbolics bugs with blocker flavor
- https://trac.sagemath.org/ticket/31515 - sympy bugfix upgrade (1.7->1.7.1)
- https://trac.sagemath.org/ticket/31532, 
https://trac.sagemath.org/ticket/30213, 
https://trac.sagemath.org/ticket/31541 *(needs review)*, 
https://trac.sagemath.org/ticket/31534 
*(needs review)* - more updates to the GH Actions workflows so that our 
demonstration of platform support in the release tour will be more 
impressive
- https://trac.sagemath.org/ticket/31505 *(needs review)* - no longer 
refuse to build when MacPorts is active
- https://trac.sagemath.org/ticket/27804 - enables build of the polymake 
package on platforms where our lrslib package is broken (I know, not a 
blocker ticket by definition)

*All: *Thanks to all who have contributed to https://wiki.sagemath.org/
*ReleaseTours*/sage-9.3! More help, also with balancing out the writing, is 
very welcome. 

*All: *Also some last minute work on our *documentation* would be very 
valuable: https://trac.sagemath.org/ticket/29784, 
https://trac.sagemath.org/ticket/31101
 
*All:* In addition to testing the SageMath distribution, please also help 
testing our new *PyPI distribution packages ("pip-installable Sage").* See 
https://pypi.org/project/sagemath-standard/ 
and https://pypi.org/project/sage-conf/ . (The pip install of the source 
packages should work on all platforms; the *pre-built wheels* are only 
available for macOS 10.15 Python 3.8 at the moment.)



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Re: [sage-release] Sage 9.3.rc1 released

[Matthias Köppe]

There are a number of recent tickets, not yet merged, that fix /usr/local 
leakage.
First ticket to try: https://trac.sagemath.org/ticket/31552 - singular

On Wednesday, March 31, 2021 at 8:35:26 PM UTC-7 jus...@mac.com wrote:

> A quick follow-up:
>
> > On Mar 31, 2021, at 20:26 , 'Justin C. Walker' via sage-release <
> sage-r...@googlegroups.com> wrote:
> > 
> > Thanks for looking at this. See below:
> > 
> >> On Mar 31, 2021, at 17:33 , Matthias Köppe  
> wrote:
> >> 
> >> On Wednesday, March 31, 2021 at 2:53:22 PM UTC-7 jus...@mac.com wrote:
> >> 
> >>> with rc0 and rc1, I have a real problem on all three macOS systems of 
> mine (10.13.6, 10.14.6 and 10.15.7): the build proceeds a while, and then 
> blows up on pynac. The log for this build, and the config.log, are attached 
> (and I do not use any package managers). 
> >>> 
> >>> One possibly odd thing is this line near the end of the pynac log: 
> >>> ld: can't map file, errno=22 file '/Users/Sage/sage-9.3.rc1/local/lib' 
> for architecture x86_64
> >> From pynac.log:
> >> 
> >> /bin/bash ../libtool --tag=CXX --mode=link g++ -std=gnu++11 -std=c++11 
> -O2 -g -O2 -g -march=native -version-info 21:5:3 
> -L/Users/Sage/sage-9.3.rc0/local/lib 
> -Wl,-rpath,/Users/Sage/sage-9.3.rc0/local/lib -o libpynac.la -rpath 
> /Users/Sage/sage-9.3.rc0/local/lib libpynac_la-add.lo [...] 
> libpynac_la-useries.lo -bundle -undefined dynamic_lookup 
> -L/Users/Sage/sage-9.3.rc0/local/lib 
> -Wl,-rpath,/Users/Sage/sage-9.3.rc0/local/lib -L. 
> -L/Users/Sage/sage-9.3.rc0/local/lib 
> -Wl,-rpath,/Users/Sage/sage-9.3.rc0/local/lib 
> -L/Users/Sage/sage-9.3.rc0/local/lib 
> -Wl,-rpath,/Users/Sage/sage-9.3.rc0/local/lib -O2 -g -march=native -lflint 
> -lgmp -lfactory -Wl,/Users/Sage/sage-9.3.rc0/local/lib -lflint -lmpfr -lntl 
> -L/usr/local/lib -Wl,-rpath -Wl,/usr/local/lib -lgmp -lomalloc 
> -L/Users/Sage/sage-9.3.rc0/local/lib -lsingular_resources -lflint -lgmp 
> >> 
> >> Note the "-Wl,-rpath -Wl,/usr/local/lib" - which gets reordered by 
> libtool in the next line to something that causes the error.
> >> Correct would be "-Wl,-rpath,/usr/local/lib". It would be worth 
> checking whether this is coming in from some environment variables that you 
> may have set.
> > 
> > Here is the environment in my normal shell:
> > 
> > $ env|grep lib
> > $
> > 
> > so nothing that mentions ‘lib’. I ran this in SAGE_ROOT for 9.3-rc1
> > 
> > Then, following the instructions near the end of the pynac log, I did 
> the same:
> > 
> > (sage-buildsh) justin@Kronecker:pynac-0.7.27.p1$ env|grep lib
> > LDFLAGS=-L/Users/Sage/sage-9.3.rc1/local/lib 
> -Wl,-rpath,/Users/Sage/sage-9.3.rc1/local/lib 
> > R_MAKEVARS_SITE=/Users/Sage/sage-9.3.rc1/local/lib/R/share/Makevars.site
> > ECLDIR=/Users/Sage/sage-9.3.rc1/local/lib/ecl/
> > LIBRARY_PATH=/Users/Sage/sage-9.3.rc1/local/lib
> > PERL5LIB=/Users/Sage/sage-9.3.rc1/local/lib/perl5:
> > MPLCONFIGDIR=/Users/justin/.sage//matplotlib-1.5.1
> > SAGE_SPKG_INST=/Users/Sage/sage-9.3.rc1/local/var/lib/sage/installed
> > RANLIB=ranlib
> > SAGE_PARI_CFG=/Users/Sage/sage-9.3.rc1/local/lib/pari/pari.cfg
> > (sage-buildsh) justin@Kronecker:pynac-0.7.27.p1$ 
> > 
> > Doesn’t seem like “/usr/local/lib” is mentioned. Does ‘env’ catch all 
> environment variables?
> > 
> > Justin
>
> I see the same thing you pointed out in the rc0 log for pynac, but there 
> is no mention at all of “/usr/local” in the pynac logs for earlier betas. 
> This is on my 10.13.6 system, and have not updated this system’s tool chain 
> in forever (a technical term meaning “I've forgotten the last time I did 
> it”).
>
> Maybe something snuck into the repository between beta9 and rc0?
>
> Justin
>
> --
> Justin C. Walker, Curmudgeon at Large
> Director
> Institute for the Enhancement of the Director's income
> ---
> Question 43:
> What if the hokey pokey
> really *is* what it’s all about?
> --
>
>

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Re: [sage-release] Sage 9.3.rc1 released

[Matthias Köppe]

On Wednesday, March 31, 2021 at 2:53:22 PM UTC-7 jus...@mac.com wrote:

> with rc0 and rc1, I have a real problem on all three macOS systems of mine 
> (10.13.6, 10.14.6 and 10.15.7): the build proceeds a while, and then blows 
> up on pynac. The log for this build, and the config.log, are attached (and 
> I do not use any package managers). 
>
> One possibly odd thing is this line near the end of the pynac log: 
> ld: can't map file, errno=22 file '/Users/Sage/sage-9.3.rc1/local/lib' for 
> architecture x86_64


>From pynac.log:

/bin/bash ../libtool  --tag=CXX   --mode=link g++ -std=gnu++11 -std=c++11  
-O2 -g -O2 -g -march=native -version-info 21:5:3 
-L/Users/Sage/sage-9.3.rc0/local/lib 
-Wl,-rpath,/Users/Sage/sage-9.3.rc0/local/lib  -o libpynac.la -rpath 
/Users/Sage/sage-9.3.rc0/local/lib libpynac_la-add.lo [...] 
libpynac_la-useries.lo -bundle -undefined dynamic_lookup 
-L/Users/Sage/sage-9.3.rc0/local/lib 
-Wl,-rpath,/Users/Sage/sage-9.3.rc0/local/lib -L. 
-L/Users/Sage/sage-9.3.rc0/local/lib 
-Wl,-rpath,/Users/Sage/sage-9.3.rc0/local/lib 
-L/Users/Sage/sage-9.3.rc0/local/lib 
-Wl,-rpath,/Users/Sage/sage-9.3.rc0/local/lib -O2 -g -march=native -lflint 
-lgmp  -lfactory -Wl,/Users/Sage/sage-9.3.rc0/local/lib -lflint -lmpfr 
-lntl -L/usr/local/lib *-Wl,-rpath -Wl,/usr/local/lib* -lgmp -lomalloc 
-L/Users/Sage/sage-9.3.rc0/local/lib -lsingular_resources-lflint -lgmp 

Note the "*-Wl,-rpath -Wl,/usr/local/lib" *- which gets reordered by 
libtool in the next line to something that causes the error.
Correct would be "*-Wl,-rpath,/usr/local/lib".* It would be worth checking 
whether this is coming in from some environment variables that you may have 
set.

>
>

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[sage-release] Re: Sage 9.3.rc1 released

[Matthias Köppe]

Thanks, Volker, for preparing 9.3.rc0 and .rc1. 

As the GH Actions run at 
https://github.com/sagemath/sage/actions/runs/699525589 shows, there are 
still various serious issues that need to be fixed, in particular so that 
we do not have regressions in platform support compared to the previous 
release. 

In addition, there are a number of quality-of-release issues that will be 
helpful to fix so that they do not become a burden to those developers who 
respond to user questions on sage-support/sage-devel. 

For many but not all of these issues, we already have positively reviewed 
tickets. Other tickets are in need of help or are waiting for review.





On Tuesday, March 30, 2021 at 1:41:40 PM UTC-7 Volker Braun wrote:

> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html 
>
> a89f81d778 (tag: 9.3.rc1, trac/develop) Updated SageMath version to 9.3.rc1
> 6e084f9dba Trac #31521: numpy build broken with SAGE_FAT_BINARY=yes
> 2c25f07cfd (tag: 9.3.rc0) Updated SageMath version to 9.3.rc0
>
>

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Re: [sage-release] Sage 9.3.rc0 released

[Matthias Köppe]

We updated Singular. You may have to use "make sagelib-clean" to rebuild 
the Sage library from scratch.

(See https://trac.sagemath.org/ticket/29711 for the issue that sagelib does 
not have proper dependencies on the libraries that it uses.)

On Tuesday, March 23, 2021 at 7:09:26 PM UTC-7 Samuel Lelievre wrote:

> Thanks for this new release.
>
> On macOS 10.14.6 with Homebrew and many packages,
> running `make` led to an error while building dochtml.
>
> ```
> Traceback (most recent call last):
> File 
> "/usr/local/Cellar/python@3.9/3.9.2_2/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py",
> line 188, in _run_module_as_main
> mod_name, mod_spec, code = _get_module_details(mod_name, _Error)
> File 
> "/usr/local/Cellar/python@3.9/3.9.2_2/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py",
> line 147, in _get_module_details
> return _get_module_details(pkg_main_name, error)
> File 
> "/usr/local/Cellar/python@3.9/3.9.2_2/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py",
> line 111, in _get_module_details
> __import__(pkg_name)
> File 
> "/opt/s/sage93f/local/lib/python3.9/site-packages/sage_docbuild/__init__.py",
> line 57, in 
> import sage.all
> File "/opt/s/sage93f/local/lib/python3.9/site-packages/sage/all.py",
> line 142, in 
> from sage.rings.all import *
> File "/opt/s/sage93f/local/lib/python3.9/site-packages/sage/rings/all.py",
> line 83, in 
> from .polynomial.all import *
> File 
> "/opt/s/sage93f/local/lib/python3.9/site-packages/sage/rings/polynomial/all.py",
> line 42, in 
> from sage.rings.polynomial.laurent_polynomial_ring import
> LaurentPolynomialRing
> File 
> "/opt/s/sage93f/local/lib/python3.9/site-packages/sage/rings/polynomial/laurent_polynomial_ring.py",
> line 50, in 
> from sage.rings.polynomial.laurent_polynomial import
> LaurentPolynomial_mpair, LaurentPolynomial_univariate
> File "sage/rings/polynomial/laurent_polynomial.pyx", line 1, in init
> sage.rings.polynomial.laurent_polynomial
> (build/cythonized/sage/rings/polynomial/laurent_polynomial.c:40841)
> File "sage/matrix/matrix0.pyx", line 28, in init sage.matrix.matrix0
> (build/cythonized/sage/matrix/matrix0.c:44271)
> File 
> "/opt/s/sage93f/local/lib/python3.9/site-packages/sage/modules/free_module.py",
> line 167, in 
> import sage.matrix.matrix_space
> File 
> "/opt/s/sage93f/local/lib/python3.9/site-packages/sage/matrix/matrix_space.py",
> line 55, in 
> from . import matrix_mpolynomial_dense
> ImportError: 
> dlopen(/opt/s/sage93f/local/lib/python3.9/site-packages/sage/matrix/
> matrix_mpolynomial_dense.cpython-39-darwin.so,
> 2): Library not loaded:
> /opt/s/sage93f/local/lib/libSingular-4.1.1.dylib
> Referenced from:
> /opt/s/sage93f/local/lib/python3.9/site-packages/sage/matrix/
> matrix_mpolynomial_dense.cpython-39-darwin.so
> Reason: image not found
> ```
>
> Logs:
>
> https://www.math.u-psud.fr/~lelievre/t/slel-2021-03-24-s93rc0.zip
>

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Re: [sage-release] Sage 9.3.beta8 released

[Matthias Köppe]

On Monday, March 15, 2021 at 6:00:13 PM UTC-7 Samuel Lelievre wrote:

> 2021-03-14 17:53 UTC, Matthias Köppe: 
> > Could you try with: export SETUPTOOLS_USE_DISTUTILS=local 
> > before restarting build? 
>
> That trick helps. 
>
> a. 
>
> Starting from the same branch that failed above, this 
> ``` 
> $ source .homebrew-build-env 
> $ export SETUPTOOLS_USE_DISTUTILS=local 
> $ ./bootstrap -q && ./configure -q && make -s V=0 
> ``` 
> succeeds in building cysignals-1.10.2 and many more 
> packages


Thanks for testing!
 

> but eventually fails to build argon2_cffi-20.1.0. 
>

Yes, this one fixed in https://trac.sagemath.org/ticket/31441 (already 
merged in 9.3.beta9)
 

> In a different install, applying tickets 31474 (upgrade cysignals) 
> and 31335, the build fails on distutil. 
>

... dateutil, actually.
 
This looks like a typical error that arises when you switch the version of 
python3 in an existing build.
Nothing to fix, it will go away if you run "make distclean" or possibly 
just "rm $SAGE_LOCAL/pyvenv.cfg"


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Re: [sage-release] Sage 9.3.beta9 released

[Matthias Köppe]

On Monday, March 15, 2021 at 1:42:44 PM UTC-7 Samuel Lelievre wrote:

> On macOS 10.14.6, in a fresh clone, I got this: 
> ``` 
> $ source .homebrew-build-env 
> $ ./bootstrap -q 
> $ ./configure --enable-download-from-upstream-url -q 
> ./configure: line 40596: SAGE_SPKG_CONFIGURE_SAGELIB: command not found 
>

Harmless, will be fixed in https://trac.sagemath.org/ticket/31496
 

> configure: WARNING: ".../build/pkgs/termcap/type" is missing. 
> Leftovers from another branch? 
>

You can just delete the termcap directory. The package has been removed. 

 

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Re: [sage-release] Sage 9.3.beta9 released

[Matthias Köppe]

Use ". .homebrew-build-env" before building. 
(See https://trac.sagemath.org/ticket/29872)

Also https://trac.sagemath.org/ticket/31348 
("build/pkgs/{mpir,mpfr}/spkg-configure.m4: Check pkg-config first") would 
improve this -- this ticket needs help.




On Monday, March 15, 2021 at 6:26:40 AM UTC-7 Kenji Iohara wrote:

> On my Mac OS.11.2.3, I have falied compiling pynac-0.7.27.p1.
>

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[sage-release] Re: Sage 9.3.beta9 released

[Matthias Köppe]

On Sunday, March 14, 2021 at 6:02:03 PM UTC-7 Volker Braun wrote:

> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html 
>
> We should start with the first release candidate real soon, if you have 
> something urgent (in particular blocker tickets) then now is the time ;-)
>
> 5cb72aade9 (tag: 9.3.beta9) Updated SageMath version to 9.3.beta9
>

Thanks, Volker, for preparing the new beta release.

Let me highlight one merged ticket:

6c5c6b4386 Trac #31377: ./configure --enable-editable

Thanks to work by Tobias Diez, the Sage library can now be installed in 
editable ("develop") mode.
See 
https://wiki.sagemath.org/ReleaseTours/sage-9.3#Editable_.28.22in-place.22.2C_.22develop.22.29_installs_of_the_Sage_library




>

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[sage-release] Re: Sage 9.3.beta8 released

[Matthias Köppe]

On Sunday, March 14, 2021 at 10:57:13 AM UTC-7 Matthias Köppe wrote:

> Results for macOS 11 (Big Sur) using 
> https://trac.sagemath.org/ticket/31492 at 
> https://github.com/mkoeppe/sage/runs/2103782309
>

local-macos (homebrew-macos, minimal, default, *macos-11.0*) 
https://github.com/mkoeppe/sage/runs/2103782309
*scipy build fails* - https://trac.sagemath.org/ticket/31326

local-macos (conda-forge-macos, standard, default, macos-11.0) 
<https://github.com/mkoeppe/sage/runs/2103782333?check_suite_focus=true#logs> - 
likewise
local-macos (homebrew-macos-python3_pythonorg, standard, default, 
macos-11.0) 
<https://github.com/mkoeppe/sage/runs/2103782375?check_suite_focus=true#logs> - 
likewise
local-macos (conda-forge-macos, environment, default, macos-11.0) 
<https://github.com/mkoeppe/sage/runs/2103782381?check_suite_focus=true#logs> - 
likewise

local-macos (homebrew-macos, standard, default, macos-11.0)
https://github.com/mkoeppe/sage/runs/2103782321
*mostly clean* (times out during make ptest)


 

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[sage-release] Re: Sage 9.3.beta8 released

[Matthias Köppe]

On Saturday, March 13, 2021 at 11:21:20 AM UTC-8 Matthias Köppe wrote:

> On Monday, March 8, 2021 at 6:16:41 AM UTC-8 Matthias Köppe wrote:
>
>> On Sunday, March 7, 2021 at 7:28:28 PM UTC-8 Matthias Köppe wrote:
>>
>>> On Sunday, March 7, 2021 at 1:35:32 PM UTC-8 Volker Braun wrote:
>>>
>>>> As always, you can get the latest beta version from the "develop" git 
>>>> branch. Alternatively, the self-contained source tarball is at 
>>>> http://www.sagemath.org/download-latest.html 
>>>>
>>>> fbca269f62 (HEAD -> develop, tag: 9.3.beta8, trac/develop) Updated 
>>>> SageMath version to 9.3.beta8
>>>>
>>>
>>> Thanks, Volker, for preparing the new release.
>>>
>>> The first automatic tests at 
>>> https://github.com/sagemath/sage/runs/2051745051 have completed:
>>> *ubuntu*-{trusty,xenial,bionic,focal,groovy,hirsute}-{minimal,standard}: 
>>> Clean
>>> *debian*-{jessie,stretch,buster,bullseye,sid}-{minimal,standard}: Clean
>>> ... with the exception of:
>>> {debian-bullseye,ubuntu-groovy}-standard: cvxopt testsuite errors, 
>>> *numerics-related 
>>> sage testsuite errors*
>>> (is system BLAS feeling OK??)
>>>
>>> There are numerous issues with our *Cygwin* platform (see tests at 
>>> https://github.com/sagemath/sage/runs/2052230526 and 
>>> https://trac.sagemath.org/query?status=needs_info=needs_review=needs_work=new=positive_review=~cygwin=id=summary=status=type=priority=milestone=component=priority
>>>  
>>> for a list of tickets). *Help by more developers would be most welcome.*
>>>
>>
>> More results:
>>
>> *linuxmint*-17-{minimal,standard}: *Doctest errors from "setlocale" 
>> output*
>> linuxmint-{18,19,19.3,20.1}-{minimal,standard}: Clean
>>
>> *fedora*-26-minimal, centos-7-minimal, centos-7-i386-minimal: openssl 
>> problem, fixed by https://trac.sagemath.org/ticket/31439
>> fedora-{26,27,29,30,31,32,33}-standard: Clean
>> fedora-{27,28,29,30,31,32,33}-minimal: Clean
>> fedora-28-standard: 
>> - cvxopt testsuite errors
>> - src/sage/rings/polynomial/groebner_fan.py # 3 doctests failed
>> - *src/sage/rings/real_mpfr.pyx # Killed due to abort*
>> fedora-24-standard:
>>   [eclib-20190909]   /usr/bin/ld: /usr/lib64/*libntl.so: undefined 
>> reference* to 
>> `std::__exception_ptr::exception_ptr::_M_release()@CXXABI_1.3.13'
>>
>> *centos*-7-standard: [dochtml] ImportError: /lib64/*libz.so.1: version 
>> `ZLIB_1.2.9' not found* (required by /sage/local/lib/libpng16.so.16)
>> centos-8-{minimal,standard}: Clean
>>
>> *gentoo*-{minimal,standard}: Clean
>> gentoo-python3.7-{minimal,standard}: Clean
>>
>> *archlinux*-latest-{minimal,standard}: Clean
>>
>> *slackware*-14.2-{minimal,standard}: Clean
>>
>> *conda-forge*-minimal: Error building package python3-3.9.1
>> *conda-forge*-standard: Sage does not accept system python3 - fixed by 
>> https://trac.sagemath.org/ticket/31358?
>>
>> *ubuntu-*{bionic,focal}*-i386*-minimal: [openssl-3.0.0-alpha11] 
>> /usr/include/stdio.h:27:10: fatal error: bits/libc-header-start.h: No such 
>> file or directory
>> *debian*-buster-*i386*-minimal: likewise
>> debian-buster-i386-standard: Clean except for
>> - src/sage/*parallel/decorate.py* # 1 doctest failed
>> - src/sage/schemes/*elliptic_curves/ell_field.py* # 1 doctest failed
>>
>
> Results for macOS 10.15 (Catalina) are now in at 
> https://github.com/sagemath/sage/runs/2051746258
>
> *homebrew-macos-10.15**-minimal**-xcode_11.7* (
> https://github.com/sagemath/sage/runs/2051746258): Clean except for:
> sage -t --random-seed=0 src/sage/geometry/polyhedron/base.py  # 1 doctest 
> failed (*get_memory_usage*)
> sage -t --random-seed=0 src/sage/interfaces/gap.py  # 1 doctest failed
> (File "src/sage/interfaces/*gap*.py", line 482, in 
> sage.interfaces.gap.Gap_generic._read_in_file_command)
>
> *-standard-default* likewise
> *-standard-python3_xcode* (
> https://github.com/sagemath/sage/runs/2051746451) likewise 
> *-minimal-nokegonly**-xcode_11.7* (
> https://github.com/sagemath/sage/runs/2051746494) likewise
>
> *-minimal-{xcode_12.2,default=xcode_12.3}* (
> https://github.com/sagemath/sage/runs/2051746270?check_suite_focus=true)
> Lots of additional doctest failures from* unexpected linker messages:*
> File "src/sage/structure/factory.pyx", line 199, in 
> sage.structure.factory.UniqueFactory
> Failed example:
> cython("cdef class C: pass")
> Expec

Re: [sage-release] Sage 9.3.beta8 released

[Matthias Köppe]

On Sunday, March 14, 2021 at 10:48:30 AM UTC-7 Samuel Lelievre wrote:

> 2021-03-13 17:27 UTC, Matthias Köppe: 
> > On Friday, March 12, 2021 at 1:00:17 PM UTC-8 Samuel Lelievre wrote: 
> >> On macOS 10.14.6, with Homebrew, failed to build cysignals-1.10.2. 
> > This is another instance of homebrew packages 
> > leaking into the build, in this case pari. 
> > 
> > Please try with https://trac.sagemath.org/ticket/31335 
> > ("homebrew: Unused packages (singular, pari, ...) 
> > in /usr/local leak into sagelib build via distutils.cfg") 
>
> Tried with #31335 applied: cysignals still fails to build. 
>
> https://www.math.u-psud.fr/~lelievre/t/slel-2021-03-14-s93b8-t31335.zip 
>

Thanks for testing!

Could you try with: export SETUPTOOLS_USE_DISTUTILS=local
before restarting build?



 

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[sage-release] Re: Sage 9.3.beta8 released

[Matthias Köppe]

On Monday, March 8, 2021 at 6:16:41 AM UTC-8 Matthias Köppe wrote:

> On Sunday, March 7, 2021 at 7:28:28 PM UTC-8 Matthias Köppe wrote:
>
>> On Sunday, March 7, 2021 at 1:35:32 PM UTC-8 Volker Braun wrote:
>>
>>> As always, you can get the latest beta version from the "develop" git 
>>> branch. Alternatively, the self-contained source tarball is at 
>>> http://www.sagemath.org/download-latest.html 
>>>
>>> fbca269f62 (HEAD -> develop, tag: 9.3.beta8, trac/develop) Updated 
>>> SageMath version to 9.3.beta8
>>>
>>
>> Thanks, Volker, for preparing the new release.
>>
>> The first automatic tests at 
>> https://github.com/sagemath/sage/runs/2051745051 have completed:
>> *ubuntu*-{trusty,xenial,bionic,focal,groovy,hirsute}-{minimal,standard}: 
>> Clean
>> *debian*-{jessie,stretch,buster,bullseye,sid}-{minimal,standard}: Clean
>> ... with the exception of:
>> {debian-bullseye,ubuntu-groovy}-standard: cvxopt testsuite errors, 
>> *numerics-related 
>> sage testsuite errors*
>> (is system BLAS feeling OK??)
>>
>> There are numerous issues with our *Cygwin* platform (see tests at 
>> https://github.com/sagemath/sage/runs/2052230526 and 
>> https://trac.sagemath.org/query?status=needs_info=needs_review=needs_work=new=positive_review=~cygwin=id=summary=status=type=priority=milestone=component=priority
>>  
>> for a list of tickets). *Help by more developers would be most welcome.*
>>
>
> More results:
>
> *linuxmint*-17-{minimal,standard}: *Doctest errors from "setlocale" 
> output*
> linuxmint-{18,19,19.3,20.1}-{minimal,standard}: Clean
>
> *fedora*-26-minimal, centos-7-minimal, centos-7-i386-minimal: openssl 
> problem, fixed by https://trac.sagemath.org/ticket/31439
> fedora-{26,27,29,30,31,32,33}-standard: Clean
> fedora-{27,28,29,30,31,32,33}-minimal: Clean
> fedora-28-standard: 
> - cvxopt testsuite errors
> - src/sage/rings/polynomial/groebner_fan.py # 3 doctests failed
> - *src/sage/rings/real_mpfr.pyx # Killed due to abort*
> fedora-24-standard:
>   [eclib-20190909]   /usr/bin/ld: /usr/lib64/*libntl.so: undefined 
> reference* to 
> `std::__exception_ptr::exception_ptr::_M_release()@CXXABI_1.3.13'
>
> *centos*-7-standard: [dochtml] ImportError: /lib64/*libz.so.1: version 
> `ZLIB_1.2.9' not found* (required by /sage/local/lib/libpng16.so.16)
> centos-8-{minimal,standard}: Clean
>
> *gentoo*-{minimal,standard}: Clean
> gentoo-python3.7-{minimal,standard}: Clean
>
> *archlinux*-latest-{minimal,standard}: Clean
>
> *slackware*-14.2-{minimal,standard}: Clean
>
> *conda-forge*-minimal: Error building package python3-3.9.1
> *conda-forge*-standard: Sage does not accept system python3 - fixed by 
> https://trac.sagemath.org/ticket/31358?
>
> *ubuntu-*{bionic,focal}*-i386*-minimal: [openssl-3.0.0-alpha11] 
> /usr/include/stdio.h:27:10: fatal error: bits/libc-header-start.h: No such 
> file or directory
> *debian*-buster-*i386*-minimal: likewise
> debian-buster-i386-standard: Clean except for
> - src/sage/*parallel/decorate.py* # 1 doctest failed
> - src/sage/schemes/*elliptic_curves/ell_field.py* # 1 doctest failed
>

Results for macOS 10.15 (Catalina) are now in 
at https://github.com/sagemath/sage/runs/2051746258

*homebrew-macos-10.15**-minimal**-xcode_11.7* 
(https://github.com/sagemath/sage/runs/2051746258): 
Clean except for:
sage -t --random-seed=0 src/sage/geometry/polyhedron/base.py  # 1 doctest 
failed (*get_memory_usage*)
sage -t --random-seed=0 src/sage/interfaces/gap.py  # 1 doctest failed
(File "src/sage/interfaces/*gap*.py", line 482, in 
sage.interfaces.gap.Gap_generic._read_in_file_command)

*-standard-default* likewise
*-standard-python3_xcode* (https://github.com/sagemath/sage/runs/2051746451) 
likewise 
*-minimal-nokegonly**-xcode_11.7* 
(https://github.com/sagemath/sage/runs/2051746494) 
likewise

*-minimal-{xcode_12.2,default=xcode_12.3}*
 (https://github.com/sagemath/sage/runs/2051746270?check_suite_focus=true)
Lots of additional doctest failures from* unexpected linker messages:*
File "src/sage/structure/factory.pyx", line 199, in 
sage.structure.factory.UniqueFactory
Failed example:
cython("cdef class C: pass")
Expected nothing
Got:
ld: warning: dylib (/usr/local/lib/libmpfr.dylib)* was built for newer 
macOS version (10.15) than being linked (10.9)*
[...]--> https://trac.sagemath.org/ticket/31204 
/ https://trac.sagemath.org/ticket/18272
*...-*
*-standard-python3_xcode* likewise
*-minimal-nokegonly**-{xcode_12.2,default,xcode_12.4}* likewise

*homebrew-*macos-10.15-standard-*nokegonly*-python3_xcode-{xcode_11.7,xcode_12.2,default,xcode_12.4}
 
(https://github.com/sagemath/sage/runs/2051746530): 

Re: [sage-release] Sage 9.3.beta8 released

[Matthias Köppe]

>From your log:

  gcc -bundle -undefined dynamic_lookup -isysroot 
/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk 
-L/opt/s/sage93c/local/lib -Wl,-rpath,/opt/s/sage93c/local/lib -O2 -g 
-march=native -Wp,-U_FORTIFY_SOURCE 
build/temp.macosx-10.14-x86_64-3.9/build/src/cysignals/signals.o 
-L/usr/local/lib -L/usr/local/opt/openssl@1.1/lib 
-L/usr/local/opt/sqlite/lib -L/usr/local/opt/tcl-tk/lib -o 
build/lib.macosx-10.14-x86_64-3.9/cysignals/signals.cpython-39-darwin.so 
-lpari -pthread
  ld: illegal data reference in _PARI_SIGINT_block to thread local variable 
_PARI_SIGINT_block in dylib /opt/s/sage93c/local/lib/libpari.dylib for 
architecture x86_64
  clang: error: linker command failed with exit code 1 (use -v to see 
invocation)
  error: command '/usr/bin/gcc' failed with exit code 1
  Building wheel for cysignals (setup.py): finished with status 'error'
 
This is another instance of homebrew packages leaking into the build, in 
this case pari.

Please try with https://trac.sagemath.org/ticket/31335 ("homebrew: Unused 
packages (singular, pari, ...) in /usr/local leak into sagelib build via 
distutils.cfg")






On Friday, March 12, 2021 at 1:00:17 PM UTC-8 Samuel Lelievre wrote:

> Thanks for this new release.
>
> On macOS 10.14.6, with Homebrew, failed to build cysignals-1.10.2.
>
> Logs:
>
> https://www.math.u-psud.fr/~lelievre/t/slel-2021-03-12-s93b8.zip
>

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Re: [sage-release] Sage 9.3.beta8 released

[Matthias Köppe]

See https://trac.sagemath.org/ticket/30945

On Monday, March 8, 2021 at 11:52:46 AM UTC-8 François Bissey wrote:

> I have been having a segfault in that file for a while between 9.3.beta7 
> and 9.3.beta8
> in sage-on-gentoo when running parallel testing. However the tests run all 
> fine on that
> file when doing an individual run. There probably can be some kind of race 
> condition 
> when running in parallel.
>
> > On 8/03/2021, at 23:27, Thierry Dumont  
> wrote:
> > 
> > 1 error:
> > 
> > sage -t --long --warn-long 89.4 --random-seed=0 
> src/sage/interfaces/singular.py
> > Killed due to segmentation fault
>
>

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[sage-release] Re: Sage 9.3.beta8 released

[Matthias Köppe]

On Sunday, March 7, 2021 at 7:28:28 PM UTC-8 Matthias Köppe wrote:

> On Sunday, March 7, 2021 at 1:35:32 PM UTC-8 Volker Braun wrote:
>
>> As always, you can get the latest beta version from the "develop" git 
>> branch. Alternatively, the self-contained source tarball is at 
>> http://www.sagemath.org/download-latest.html 
>>
>> fbca269f62 (HEAD -> develop, tag: 9.3.beta8, trac/develop) Updated 
>> SageMath version to 9.3.beta8
>>
>
> Thanks, Volker, for preparing the new release.
>
> The first automatic tests at 
> https://github.com/sagemath/sage/runs/2051745051 have completed:
> *ubuntu*-{trusty,xenial,bionic,focal,groovy,hirsute}-{minimal,standard}: 
> Clean
> *debian*-{jessie,stretch,buster,bullseye,sid}-{minimal,standard}: Clean
> ... with the exception of:
> {debian-bullseye,ubuntu-groovy}-standard: cvxopt testsuite errors, 
> *numerics-related 
> sage testsuite errors*
> (is system BLAS feeling OK??)
>
> There are numerous issues with our *Cygwin* platform (see tests at 
> https://github.com/sagemath/sage/runs/2052230526 and 
> https://trac.sagemath.org/query?status=needs_info=needs_review=needs_work=new=positive_review=~cygwin=id=summary=status=type=priority=milestone=component=priority
>  
> for a list of tickets). *Help by more developers would be most welcome.*
>

More results:

*linuxmint*-17-{minimal,standard}: *Doctest errors from "setlocale" output*
linuxmint-{18,19,19.3,20.1}-{minimal,standard}: Clean

*fedora*-26-minimal, centos-7-minimal, centos-7-i386-minimal: openssl 
problem, fixed by https://trac.sagemath.org/ticket/31439
fedora-{26,27,29,30,31,32,33}-standard: Clean
fedora-{27,28,29,30,31,32,33}-minimal: Clean
fedora-28-standard: 
- cvxopt testsuite errors
- src/sage/rings/polynomial/groebner_fan.py # 3 doctests failed
- *src/sage/rings/real_mpfr.pyx # Killed due to abort*
fedora-24-standard:
  [eclib-20190909]   /usr/bin/ld: /usr/lib64/*libntl.so: undefined 
reference* to 
`std::__exception_ptr::exception_ptr::_M_release()@CXXABI_1.3.13'

*centos*-7-standard: [dochtml] ImportError: /lib64/*libz.so.1: version 
`ZLIB_1.2.9' not found* (required by /sage/local/lib/libpng16.so.16)
centos-8-{minimal,standard}: Clean

*gentoo*-{minimal,standard}: Clean
gentoo-python3.7-{minimal,standard}: Clean

*archlinux*-latest-{minimal,standard}: Clean

*slackware*-14.2-{minimal,standard}: Clean

*conda-forge*-minimal: Error building package python3-3.9.1
*conda-forge*-standard: Sage does not accept system python3 - fixed 
by https://trac.sagemath.org/ticket/31358?

*ubuntu-*{bionic,focal}*-i386*-minimal: [openssl-3.0.0-alpha11] 
/usr/include/stdio.h:27:10: fatal error: bits/libc-header-start.h: No such 
file or directory
*debian*-buster-*i386*-minimal: likewise
debian-buster-i386-standard: Clean except for
- src/sage/*parallel/decorate.py* # 1 doctest failed
- src/sage/schemes/*elliptic_curves/ell_field.py* # 1 doctest failed 
 


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[sage-release] Re: Sage 9.3.beta8 released

[Matthias Köppe]

On Sunday, March 7, 2021 at 1:35:32 PM UTC-8 Volker Braun wrote:

> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html 
>
> fbca269f62 (HEAD -> develop, tag: 9.3.beta8, trac/develop) Updated 
> SageMath version to 9.3.beta8
>

Thanks, Volker, for preparing the new release.


The first automatic tests 
at https://github.com/sagemath/sage/runs/2051745051 have completed:
*ubuntu*-{trusty,xenial,bionic,focal,groovy,hirsute}-{minimal,standard}: 
Clean
*debian*-{jessie,stretch,buster,bullseye,sid}-{minimal,standard}: Clean
... with the exception of:
{debian-bullseye,ubuntu-groovy}-standard: cvxopt testsuite errors, 
*numerics-related 
sage testsuite errors*
(is system BLAS feeling OK??)


There are numerous issues with our *Cygwin* platform (see tests at 
https://github.com/sagemath/sage/runs/2052230526 
and 
https://trac.sagemath.org/query?status=needs_info=needs_review=needs_work=new=positive_review=~cygwin=id=summary=status=type=priority=milestone=component=priority
 
for a list of tickets). *Help by more developers would be most welcome.*



Some remarks on what is new in 9.3.beta8:

9.3.beta8 makes a number of *new packages* available that developers may 
want to test or start using:
 

> 7dfb05af9e Trac #31180: Add snappy as a pip package
> ca1e4a13a4 Trac #31177: Add graphviz, pygraphviz packages
> e976bd8767 Trac #29497: package symengine and its Python interface
>

9.3.beta8 also contains a solution to our long-standing problem with 
*openssl*:
 

> 6f07106cd4 Trac #29555: Upgrade: OpenSSL 3.0, make it a standard package
>

For developers who test on *macOS*: 

> f2fea77292 Trac #31344: homebrew: docbuild crashes, libtcl AtForkPrepare 
- from sage.misc.cython globals / multiprocessing
> 1a79f3f401 Trac #31227: Accept /usr/bin/python3 from XCode 12.3 on macOS 
10.15 (Catalina) and 11 (Big Sur)
 




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[sage-release] Re: Sage 9.3.beta7 released

[Matthias Köppe]

On Tuesday, February 9, 2021 at 9:41:54 PM UTC-8 Matthias Köppe wrote:

> The runs on GH Actions show a very strange failure on fedora-34 and 
> archlinux-latest (https://github.com/sagemath/sage/runs/1850248457):
>
> + ./bootstrap
> 
> ./sage: no Sage installation found in $SAGE_ROOT=/sage
>
> This can be reproduced locally using "tox -e docker-fedora-34-standard".
>
>
> It turns out that the built-in command "test" of bash is broken:
>
> [root@9d0e0458cde5 sage]# test -r VERSION.txt && echo yes
>
> Compare with /usr/bin/test
>
> [root@9d0e0458cde5 sage]# /usr/bin/test -r VERSION.txt && echo yes
> yes
>
Also on ubuntu-hirsute-standard.

This appears to be a problem with recent glibc versions, related to the 
faccessat2 system call - see for example 
https://bugzilla.redhat.com/show_bug.cgi?id=1900021

 

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[sage-release] Re: Sage 9.3.beta7 released

[Matthias Köppe]

On Thursday, February 11, 2021 at 3:49:44 PM UTC-8 John H Palmieri wrote:

> I just noticed something which has been happening for all of the 9.3 beta 
> releases, maybe before that. In the dochtml.log file, I see the message
>
> Help file /Applications/usr/share/giac/doc/fr/aide_cas not found
>
> (This is on OS X.) That's a strange path — there is no /Applications/usr — 
> so it's not surprising that it's not found. What is producing this message? 
> The path should be fixed.
>
>
See https://trac.sagemath.org/ticket/29552, 
https://trac.sagemath.org/ticket/30537
 

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[sage-release] Re: Sage 9.3.beta7 released

[Matthias Köppe]

On Sunday, February 7, 2021 at 2:04:42 PM UTC-8 Volker Braun wrote:

> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html 
>
> 8453ffb849 (tag: 9.3.beta7, trac/develop) Updated SageMath version to 
> 9.3.beta7
>

The runs on GH Actions show a very strange failure on fedora-34 and 
archlinux-latest (https://github.com/sagemath/sage/runs/1850248457):

+ ./bootstrap
rm -rf config configure build/make/Makefile-auto.in
rm -f src/doc/en/installation/*.txt
rm -rf src/doc/en/reference/spkg/*.rst
rm -f src/doc/en/reference/repl/*.txt
rm -f environment.yml
rm -f src/environment.yml
rm -f environment-optional.yml
rm -f src/environment-optional.yml
./sage: no Sage installation found in $SAGE_ROOT=/sage
./sage: no Sage installation found in $SAGE_ROOT=/sage
./sage: no Sage installation found in $SAGE_ROOT=/sage


This can be reproduced locally using "tox -e docker-fedora-34-standard".


It turns out that the built-in command "test" of bash is broken:

[root@9d0e0458cde5 sage]# test -r VERSION.txt && echo yes

[root@9d0e0458cde5 sage]# bash --version
GNU bash, version 5.1.0(1)-release (x86_64-redhat-linux-gnu)


Compare with /usr/bin/test

[root@9d0e0458cde5 sage]# /usr/bin/test -r VERSION.txt && echo yes
yes



 

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[sage-release] Re: Sage 9.3.beta7 released

[Matthias Köppe]

I've opened https://trac.sagemath.org/ticket/31372 for this.

On Tuesday, February 9, 2021 at 11:59:51 AM UTC-8 Matthias Köppe wrote:

> [pari_jupyter-1.3.2]   gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g 
> -fwrapv -O3 -Wall -Wno-unused -O2 -g -O2 -g -fPIC 
> -I/home/sage/sage/local/include/python3.9 -c PARIKernel/io.c -o 
> build/temp.linux-x86_64-3.9/PARIKernel/io.o
> [pari_jupyter-1.3.2]   PARIKernel/io.c: In function 'PyInit_io':
> [pari_jupyter-1.3.2]   PARIKernel/io.c:2905:43: error: 'PyTypeObject' {aka 
> 'struct _typeobject'} has no member named 'tp_print'
> [pari_jupyter-1.3.2]2905 |  
>  __pyx_type_10PARIKernel_2io_PARIKernelIO.tp_print = 0;
>
> this comes from the Python 3.9 upgrade.
>
>
> On Tuesday, February 9, 2021 at 11:57:40 AM UTC-8 Matthias Köppe wrote:
>
>> On Tuesday, February 9, 2021 at 11:38:29 AM UTC-8 fchap...@gmail.com 
>> wrote:
>>
>>> This release breaks (again) our automated docker build on gitlab : 
>>>
>>> see https://gitlab.com/sagemath/sage/-/pipelines
>>>
>>>
>> From the log:
>>
>> Error building Sage.
>> The following package(s) may have failed to build (not necessarily
>> during this run of 'make pari_jupyter'):
>> * package: pari_jupyter-1.3.2
>>   last build time: Feb 8 16:16
>>   log file:/home/sage/sage/logs/pkgs/pari_jupyter-1.3.2.log
>>   build directory: 
>> /home/sage/sage/local/var/tmp/sage/build/pari_jupyter-1.3.2
>> It is safe to delete any log files and build directories, but they
>>
>> This is an optional package.
>>
>>  
>>
>

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[sage-release] Re: Sage 9.3.beta7 released

[Matthias Köppe]

[pari_jupyter-1.3.2]   gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g 
-fwrapv -O3 -Wall -Wno-unused -O2 -g -O2 -g -fPIC 
-I/home/sage/sage/local/include/python3.9 -c PARIKernel/io.c -o 
build/temp.linux-x86_64-3.9/PARIKernel/io.o
[pari_jupyter-1.3.2]   PARIKernel/io.c: In function 'PyInit_io':
[pari_jupyter-1.3.2]   PARIKernel/io.c:2905:43: error: 'PyTypeObject' {aka 
'struct _typeobject'} has no member named 'tp_print'
[pari_jupyter-1.3.2]2905 |  
 __pyx_type_10PARIKernel_2io_PARIKernelIO.tp_print = 0;

this comes from the Python 3.9 upgrade.


On Tuesday, February 9, 2021 at 11:57:40 AM UTC-8 Matthias Köppe wrote:

> On Tuesday, February 9, 2021 at 11:38:29 AM UTC-8 fchap...@gmail.com 
> wrote:
>
>> This release breaks (again) our automated docker build on gitlab : 
>>
>> see https://gitlab.com/sagemath/sage/-/pipelines
>>
>>
> From the log:
>
> Error building Sage.
> The following package(s) may have failed to build (not necessarily
> during this run of 'make pari_jupyter'):
> * package: pari_jupyter-1.3.2
>   last build time: Feb 8 16:16
>   log file:/home/sage/sage/logs/pkgs/pari_jupyter-1.3.2.log
>   build directory: 
> /home/sage/sage/local/var/tmp/sage/build/pari_jupyter-1.3.2
> It is safe to delete any log files and build directories, but they
>
> This is an optional package.
>
>  
>

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[sage-release] Re: Sage 9.3.beta7 released

[Matthias Köppe]

On Tuesday, February 9, 2021 at 11:38:29 AM UTC-8 fchap...@gmail.com wrote:

> This release breaks (again) our automated docker build on gitlab : 
>
> see https://gitlab.com/sagemath/sage/-/pipelines
>
>
>From the log:

Error building Sage.
The following package(s) may have failed to build (not necessarily
during this run of 'make pari_jupyter'):
* package: pari_jupyter-1.3.2
  last build time: Feb 8 16:16
  log file:/home/sage/sage/logs/pkgs/pari_jupyter-1.3.2.log
  build directory: 
/home/sage/sage/local/var/tmp/sage/build/pari_jupyter-1.3.2
It is safe to delete any log files and build directories, but they

This is an optional package.

 

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[sage-release] Re: Sage 9.3.beta7 released

[Matthias Köppe]

Fixed in https://trac.sagemath.org/ticket/31358

On Sunday, February 7, 2021 at 9:06:37 PM UTC-8 Matthias Köppe wrote:

> These LDFLAGS are read from `python3 -m sysconfig`. The "-L." flag there 
> is causing this python3 to be rejected by the new checks from 
> https://trac.sagemath.org/ticket/31132 .
> Looks like using this flag is a gentoo specialty. 
>
> On Sunday, February 7, 2021 at 8:42:35 PM UTC-8 Steven Trogdon wrote:
>
>> OK, here is the reason
>>
>> g++ -std=gnu++11 -fPIC -I/local/sage-git/sage/conftest_venv/include 
>> -I/usr/include/python3.9 -c conftest.cpp -o 
>> conftest.dir/temp.linux-x86_64-3.9/conftest.o -std=c++11
>> creating conftest.dir/lib.linux-x86_64-3.9
>> x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed 
>> conftest.dir/temp.linux-x86_64-3.9/conftest.o -L/usr/lib64 -o 
>> conftest.dir/lib.linux-x86_64-3.9/
>> config_check_distutils_cxx.cpython-39-x86_64-linux-gnu.so
>> LDFLAGS = "-Wl,-O1 -Wl,--as-needed -L."
>> configure:32030: result: no, this is a misconfigured Python whose 
>> sysconfig compiler/linker flags contain -I or -L options, which may cause 
>> wrong versions of libraries to leak into the build of Python packages - see 
>> https://trac.sagemath.org/ticket/31132; to use it anyway, use 
>> ./configure --with-python=/usr/bin/python3
>>
>> I have 
>>
>> $ echo $LDFLAGS
>> -Wl,-O1 -Wl,--as-needed
>>
>> and I've had this set for some time (several years).
>>
>> On Sunday, February 7, 2021 at 9:30:29 PM UTC-7 Steven Trogdon wrote:
>>
>>> This beta does not pick up on my system (Gentoo) python. From config.log
>>>
>>> configure:39140: result: python3-3.9.1:   no 
>>> suitable system package; will be installed as an SPKG
>>>
>>> And my system python
>>>
>>> $ python
>>> Python 3.9.1 (default, Jan 26 2021, 00:24:17) 
>>> [GCC 9.3.0] on linux
>>> Type "help", "copyright", "credits" or "license" for more information.
>>> >>> 
>>>
>>> $ python3
>>> Python 3.9.1 (default, Jan 26 2021, 00:24:17) 
>>> [GCC 9.3.0] on linux
>>> Type "help", "copyright", "credits" or "license" for more information.
>>> >>> 
>>> On Sunday, February 7, 2021 at 3:04:42 PM UTC-7 Volker Braun wrote:
>>>
>>>> As always, you can get the latest beta version from the "develop" git 
>>>> branch. Alternatively, the self-contained source tarball is at 
>>>> http://www.sagemath.org/download-latest.html 
>>>>
>>>> 8453ffb849 (tag: 9.3.beta7, trac/develop) Updated SageMath version to 
>>>> 9.3.beta7
>>>> 6096110e06 Trac #30517: MemoryError in doctesting 
>>>> combinat/designs/gen_quadrangles_with_spread.pyx
>>>> e67fc51749 Trac #31148: MR51: Allow Matplotlib to use system qhull >= 
>>>> 7.2.0
>>>> f3740e8add Trac #31147: Add missing curly braces in latex of Kodaira 
>>>> symbol
>>>> d856033dd6 Trac #31144: refresh the file polyhedron/plot.py
>>>> eb9bae531a Trac #31143: shorten range(0, *) in combinat folder
>>>> 9d4f2d1525 Trac #31140: use ⨂ for unicode of tensor symbol
>>>> 5a4ad12275 Trac #31138: Document WSL Installation
>>>> c8a7960598 Trac #31134: Update setuptools and setuptools_scm
>>>> 45e7ada314 Trac #24459: Segfault in matrix_integer_dense
>>>> 9bdf1d149f Trac #24317: Doctest: Improve conversion of inexact symbolic 
>>>> values
>>>> 85f81e86d3 Trac #21907: Bug in Maxima interface wrt polylog
>>>> 913b025ac5 Trac #31283: 1000× speedup of conjugate of double dense 
>>>> matrices
>>>> bfe6fd9654 Trac #31273: Remove deprecated `form` input for bundle 
>>>> connections
>>>> 00cacf3803 Trac #31272: Improve the documentation for tensor()
>>>> 50c1a5d655 Trac #31270: Remove sage-location's "sage-force-relocate" 
>>>> mechanism, fix script to work without SAGE_ROOT
>>>> 3f5faf58b6 Trac #31266: Signed tensor products does not allow tensor 
>>>> products with non-signed modules
>>>> 1d8b95def5 Trac #31265: changes in kschur to get rid of specific 
>>>> product definition there
>>>> 9c39188e60 Trac #31262: Implement non zero chunks for sparse bitsets
>>>> 35ad55518c Trac #31261: Update pplpy to 0.8.6
>>>> d5581ba0ea Trac #31258: Upgrade cmake to 3.19.3
>>

[sage-release] Re: Sage 9.3.beta7 released

[Matthias Köppe]

These LDFLAGS are read from `python3 -m sysconfig`. The "-L." flag there is 
causing this python3 to be rejected by the new checks from 
https://trac.sagemath.org/ticket/31132 .
Looks like using this flag is a gentoo specialty. 

On Sunday, February 7, 2021 at 8:42:35 PM UTC-8 Steven Trogdon wrote:

> OK, here is the reason
>
> g++ -std=gnu++11 -fPIC -I/local/sage-git/sage/conftest_venv/include 
> -I/usr/include/python3.9 -c conftest.cpp -o 
> conftest.dir/temp.linux-x86_64-3.9/conftest.o -std=c++11
> creating conftest.dir/lib.linux-x86_64-3.9
> x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed 
> conftest.dir/temp.linux-x86_64-3.9/conftest.o -L/usr/lib64 -o 
> conftest.dir/lib.linux-x86_64-3.9/
> config_check_distutils_cxx.cpython-39-x86_64-linux-gnu.so
> LDFLAGS = "-Wl,-O1 -Wl,--as-needed -L."
> configure:32030: result: no, this is a misconfigured Python whose 
> sysconfig compiler/linker flags contain -I or -L options, which may cause 
> wrong versions of libraries to leak into the build of Python packages - see 
> https://trac.sagemath.org/ticket/31132; to use it anyway, use ./configure 
> --with-python=/usr/bin/python3
>
> I have 
>
> $ echo $LDFLAGS
> -Wl,-O1 -Wl,--as-needed
>
> and I've had this set for some time (several years).
>
> On Sunday, February 7, 2021 at 9:30:29 PM UTC-7 Steven Trogdon wrote:
>
>> This beta does not pick up on my system (Gentoo) python. From config.log
>>
>> configure:39140: result: python3-3.9.1:   no 
>> suitable system package; will be installed as an SPKG
>>
>> And my system python
>>
>> $ python
>> Python 3.9.1 (default, Jan 26 2021, 00:24:17) 
>> [GCC 9.3.0] on linux
>> Type "help", "copyright", "credits" or "license" for more information.
>> >>> 
>>
>> $ python3
>> Python 3.9.1 (default, Jan 26 2021, 00:24:17) 
>> [GCC 9.3.0] on linux
>> Type "help", "copyright", "credits" or "license" for more information.
>> >>> 
>> On Sunday, February 7, 2021 at 3:04:42 PM UTC-7 Volker Braun wrote:
>>
>>> As always, you can get the latest beta version from the "develop" git 
>>> branch. Alternatively, the self-contained source tarball is at 
>>> http://www.sagemath.org/download-latest.html 
>>>
>>> 8453ffb849 (tag: 9.3.beta7, trac/develop) Updated SageMath version to 
>>> 9.3.beta7
>>> 6096110e06 Trac #30517: MemoryError in doctesting 
>>> combinat/designs/gen_quadrangles_with_spread.pyx
>>> e67fc51749 Trac #31148: MR51: Allow Matplotlib to use system qhull >= 
>>> 7.2.0
>>> f3740e8add Trac #31147: Add missing curly braces in latex of Kodaira 
>>> symbol
>>> d856033dd6 Trac #31144: refresh the file polyhedron/plot.py
>>> eb9bae531a Trac #31143: shorten range(0, *) in combinat folder
>>> 9d4f2d1525 Trac #31140: use ⨂ for unicode of tensor symbol
>>> 5a4ad12275 Trac #31138: Document WSL Installation
>>> c8a7960598 Trac #31134: Update setuptools and setuptools_scm
>>> 45e7ada314 Trac #24459: Segfault in matrix_integer_dense
>>> 9bdf1d149f Trac #24317: Doctest: Improve conversion of inexact symbolic 
>>> values
>>> 85f81e86d3 Trac #21907: Bug in Maxima interface wrt polylog
>>> 913b025ac5 Trac #31283: 1000× speedup of conjugate of double dense 
>>> matrices
>>> bfe6fd9654 Trac #31273: Remove deprecated `form` input for bundle 
>>> connections
>>> 00cacf3803 Trac #31272: Improve the documentation for tensor()
>>> 50c1a5d655 Trac #31270: Remove sage-location's "sage-force-relocate" 
>>> mechanism, fix script to work without SAGE_ROOT
>>> 3f5faf58b6 Trac #31266: Signed tensor products does not allow tensor 
>>> products with non-signed modules
>>> 1d8b95def5 Trac #31265: changes in kschur to get rid of specific product 
>>> definition there
>>> 9c39188e60 Trac #31262: Implement non zero chunks for sparse bitsets
>>> 35ad55518c Trac #31261: Update pplpy to 0.8.6
>>> d5581ba0ea Trac #31258: Upgrade cmake to 3.19.3
>>> 57211cf752 Trac #31257: quo_rem gives wrong answers for 
>>> LaurentPolynomial_mpair
>>> b282cf6d2d Trac #31256: more care for pbori
>>> e8c83f5b70 Trac #31255: Follow Up: Mutability of Sections and Tensor 
>>> Fields
>>> 573df518ba Trac #31254: Do not perform unnecesssary subdivisions in 
>>> matrices
>>> 09f5b07182 Trac #31239: Add ore_algebra optional package
>>> 6a5ad3f3eb Trac #31216: tox.ini (local): Add environment variables to 
>>> skip system package installs and other steps, add mechanism for a local 
>>> interactive shell
>>> 1ad5cb3ec9 Trac #31197: Use bitsets/binary matrix for edges of dense 
>>> graphs
>>> 3925e96e0a Trac #31196: Code Improvements for Mutability module
>>> 01ad25fc3f Trac #31194: Make Class with Mutability compatible with 
>>> require_mutable wrapper
>>> 99d4307f61 Trac #31121: Further refactoring of eta products file
>>> 6dda91cd3b Trac #31035: Remove mathjax configuration/symlink from 
>>> jupyter notebook
>>> 2c32dab63a Trac #27103: Enable SIMD-instructions for Bitsets
>>> 6b64832a66 Trac #21783: QEPCAD: get rid of qepcad bits in 
>>> src/bin/sage-location
>>> 5e36f5d72b Trac #31271: MR52: 

[sage-release] Re: Sage 9.3.beta7 released

[Matthias Köppe]

On Sunday, February 7, 2021 at 2:04:42 PM UTC-8 Volker Braun wrote:

> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html 
>
> 8453ffb849 (tag: 9.3.beta7, trac/develop) Updated SageMath version to 
> 9.3.beta7
>
>
First test results 
from https://github.com/sagemath/sage/actions/runs/545994902:

ubuntu-bionic-standard: (python 3.6) 
still https://trac.sagemath.org/ticket/31191

debian-bullseye-standard: New(?) numerics issues:
sage -t --random-seed=0 src/sage/finance/time_series.pyx  # 8 doctests 
failed
sage -t --random-seed=0 src/sage/geometry/polyhedron/library.py  # 1 
doctest failed
sage -t --random-seed=0 src/sage/geometry/polyhedron/base.py  # 1 doctest 
failed
sage -t --random-seed=0 src/sage/matrix/matrix_double_dense.pyx  # 2 
doctests failed
sage -t --random-seed=0 src/sage/matrix/matrix_integer_dense.pyx  # 1 
doctest failed
sage -t --random-seed=0 src/sage/numerical/sdp.pyx  # 2 doctests failed
sage -t --random-seed=0 
src/sage/tests/books/computational-mathematics-with-sagemath/float_doctest.py  
# 1 doctest failed





 

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[sage-release] Re: Sage 9.3.beta7 released

[Matthias Köppe]

On Sunday, February 7, 2021 at 2:04:42 PM UTC-8 Volker Braun wrote:

> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html 
>

Thanks, Volker, for preparing the new release.
 

> 8453ffb849 (tag: 9.3.beta7, trac/develop) Updated SageMath version to 
> 9.3.beta7 [...] 
>
a549452a4b Trac #30589: Upgrade Python to 3.9.1, pip to 20.3.3
>

All - if you use python installed by Sage, note that this update contains 
the Python 3.9 upgrade, which will trigger rebuilds of all Python packages.

Developers who use homebrew on macOS -- I recommend that you update 
homebrew packages to latest; in particular python@3.9 to the latest build 
(3.9.1_8). Further fixes for known build errors on homebrew are on 
https://trac.sagemath.org/ticket/31335 (which needs testing).


 

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[sage-release] Re: Sage 9.3.beta4 released

[Matthias Köppe]

On Friday, December 18, 2020 at 8:55:29 AM UTC-8 emanuel.c...@gmail.com 
wrote:

> On Debian testing running on core i7 + 16 GB RAM, upgrading 9.3.beta3 
> (configured 
> to use all available system packages) to 9.3.beta4 leads
> to :
>
>- 
>
>./configure insists on installing texlive-latex-extra texlive-xetex 
>latexmk pandoc dvipng default-jdk ffmpeg libavdevice-dev pari-gp2c, 
>notwithstanding the fact that all of them are already installed.
>
> With the exception of pari-gp2c, this is 
https://trac.sagemath.org/ticket/30930 ("Add/update the system package 
information for the "_recommended" dummy package") -- whose ticket 
description has an explanation of what work is needed to be done.

Running doctests with ID 2020-12-18-17-31-46-5c2d5f7b.
> Git branch: develop
> Using 
> --optional=build,debian,dochtml,dot2tex,fricas,gap_jupyter,gap_packages,kenzo,libsemigroups,memlimit,pip,pysingular,sage,sage_spkg,singular_jupyter
> Doctesting 1 file.
> sage -t --long --warn-long 180.2 --random-seed=0 src/sage/misc/package.py
> **
> File "src/sage/misc/package.py", line 427, in 
> sage.misc.package.standard_packages
> Failed example:
> installed[0], installed[-1]  # optional - build
> Expected:
> ('alabaster', 'zn_poly')
> Got:
> ('alabaster', 'zipp')
> **
> 1 item had failures:
>1 of   4 in sage.misc.package.standard_packages
> [49 tests, 1 failure, 4.11 s]
> --
> sage -t --long --warn-long 180.2 --random-seed=0 src/sage/misc/package.py  # 
> 1 doctest failed
> --
> Total time for all tests: 4.2 seconds
> cpu time: 0.3 seconds
> cumulative wall time: 4.1 seconds
>
> This also seems cosmetic 
>
Yes, cosmetic, and fixed on the way 
in https://trac.sagemath.org/ticket/30940 (which needs review)


 

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[sage-release] Re: Sage 9.3.beta2 released

[Matthias Köppe]

On Tuesday, November 24, 2020 at 9:49:18 PM UTC-8 Matthias Köppe wrote:

> On Tuesday, November 24, 2020 at 3:26:08 PM UTC-8 Volker Braun wrote:
>
>> As always, you can get the latest beta version from the "develop" git 
>> branch. Alternatively, the self-contained source tarball is at 
>> http://www.sagemath.org/download-latest.html 
>>
>> 020bd59ec2 (tag: 9.3.beta2, trac/develop) Updated SageMath version to 
>> 9.3.beta2
>>
>
> Thanks, Volker, for the new release.
>
> Tests are running at https://github.com/sagemath/sage/actions,
>

More results:

*linuxmint*-17-standard: Various doctest errors of this form:
File "src/sage/tests/cmdline.py", line 179, in 
sage.tests.cmdline.test_executable
Failed example:
err
Expected:
''
Got:
'bash: warning: *setlocale: LC_ALL: cannot change locale 
(en_US.UTF-8)\*nbash: 
warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)\n'

linuxmint-{18,19,19,3} - clean or some failures as reported for 
Debian/Ubuntu

*fedora*-28-standard 
sage -t --random-seed=0 src/sage/interfaces/singular.py  # Killed due to 
segmentation fault
sage -t --random-seed=0 src/sage/rings/polynomial/groebner_fan.py  # 3 
doctests failed

File "src/sage/rings/polynomial/groebner_fan.py", line 1752, in 
sage.rings.polynomial.groebner_fan.GroebnerFan.mixed_volume
Failed example:
mv = gf.mixed_volume()
Exception raised:
  File 
"/sage/local/lib64/python3.6/site-packages/sage/rings/polynomial/groebner_fan.py",
 
line 1765, in mixed_volume
return Integer(self.gfan(cmd='mixedvolume'))
TypeError: unable to convert '' to an integer

fedora-33-standard
sage -t --random-seed=0 src/sage/functions/other.py # 1 doctest failed 

fedora-{26,27,29,30,31,32} - clean


 

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[sage-release] Re: Sage 9.3.beta2 released

[Matthias Köppe]

On Tuesday, November 24, 2020 at 3:26:08 PM UTC-8 Volker Braun wrote:

> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html 
>
> 020bd59ec2 (tag: 9.3.beta2, trac/develop) Updated SageMath version to 
> 9.3.beta2
>

Thanks, Volker, for the new release.

Tests are running at https://github.com/sagemath/sage/actions, first 
results:

*Debian/Ubuntu* systems – mostly clean, with the following exceptions:

*ubuntu-trusty-minimal* (https://github.com/sagemath/sage/runs/1450539640)
sage -t --random-seed=0 src/sage/graphs/connectivity.pyx  # 2 doctests 
failed
sage -t --random-seed=0 src/sage/doctest/test.py  # Timed out
sage -t --random-seed=0 src/sage/rings/polynomial/plural.pyx  # 2 doctests 
failed

The first one is new, I think. File "src/sage/graphs/connectivity.pyx", 
line 2686, in sage.graphs.connectivity._Component.__init__
Failed example:
cython(os.linesep.join(cython_code))
[...]
/sage/local/lib/python3.8/site-packages/sage/
*data_structures/bitset_intrinsics.h:54:5: error: ‘for’ loop initial 
declarations are only allowed in C99 mode*
 for(mp_bitcnt_t i = 0; i < limbs; i++){

The last one, plural.pyx, is likely the same as 
https://trac.sagemath.org/ticket/29528

Likewise on ubuntu-trusty-standard, debian-jessie-minimal, 
debian-jessie-standard

*Homebrew: *

*homebrew-macos-standard-xcode_default*: 
(https://github.com/sagemath/sage/runs/1450538928)
sage -t --random-seed=0 src/sage/geometry/polyhedron/base.py
**
File "src/sage/geometry/polyhedron/base.py", line 6499, in 
sage.geometry.polyhedron.base.Polyhedron_base.face_lattice
Failed example:
n == get_memory_usage()
Expected:
True
Got:
False

*https://trac.sagemath.org/ticket/30929 needs review so that Big Sur and 
more Xcode variations are tested in the next beta.*







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[sage-release] Re: Sage 9.3.beta1 released

[Matthias Köppe]

Samuel, you didn't include config.log, but my guess is that it would reveal 
that you are not using python3 from system or homebrew. config.log contains 
the relevant information why the system python3 is rejected by Sage.

On Thursday, November 19, 2020 at 4:42:07 PM UTC-8 Samuel Lelievre wrote:

>
> > From: Volker
> > Subject: Sage 9.3.beta1 released
> >
> > 222059565b (tag: 9.3.beta1, trac/develop)
> > Updated SageMath version to 9.3.beta1
>
> Thanks for this new release!
>
> All tests passed here when running  `make testlong`
> (more detail below), but I could not install JupyterLab.
>
> Setup
>
> - macOS 10.14.6 Mojave
> - many homebrew packages
> - existing Sage installation previously at some 9.2.rcN
>
> Commands
>
> ```
> $ git pull origin develop -q
> $ source .homebrew-build-env
> $ MAKE='make -j1'
> $ V=0
> $ ./bootstrap -q
> $ ./configure --enable-openssl -q
> $ make -s V=0 && make -s V=0 testlong
> ...
> All tests passed!
> ```
>
> ```
> $ V=0 ./sage -i jupyterlab_widgets
> ...
> [nodeenv] Requirement already satisfied: nodeenv~=1.4.0 in 
> /opt/s/sage93b/local/lib/python3.8/site-packages (from -r 
> /opt/s/sage93b/build/pkgs/nodeenv/requirements.txt (line 1)) (1.4.0)
> make --no-print-directory nodejs-no-deps
> cd '/opt/s/sage93b/build/pkgs/nodejs' && . 
> '/opt/s/sage93b/src/bin/sage-env-config' && . 
> '/opt/s/sage93b/src/bin/sage-env' && . 
> '/opt/s/sage93b/build/bin/sage-build-env-config' && sage-logger -p 
> '/opt/s/sage93b/build/pkgs/nodejs/spkg-install' 
> '/opt/s/sage93b/logs/pkgs/nodejs-12.18.3.log'
> [nodejs-12.18.3] Will use/install nodejs in nodeenv located at 
> /opt/s/sage93b/local/share/nodejs/12.18.3 ...
> [nodejs-12.18.3]  * Environment already exists: 
> /opt/s/sage93b/local/share/nodejs/12.18.3
> [nodejs-12.18.3]  * Install prebuilt node (12.18.3) .
> [nodejs-12.18.3] Traceback (most recent call last):
> [nodejs-12.18.3]   File 
> "/opt/s/sage93b/local/lib/python3.8/urllib/request.py", line 1350, in 
> do_open
> [nodejs-12.18.3] h.request(req.get_method(), req.selector, req.data, 
> headers,
> [nodejs-12.18.3]   File 
> "/opt/s/sage93b/local/lib/python3.8/http/client.py", line 1255, in request
> [nodejs-12.18.3] self._send_request(method, url, body, headers, 
> encode_chunked)
> [nodejs-12.18.3]   File 
> "/opt/s/sage93b/local/lib/python3.8/http/client.py", line 1301, in 
> _send_request
> [nodejs-12.18.3] self.endheaders(body, encode_chunked=encode_chunked)
> [nodejs-12.18.3]   File 
> "/opt/s/sage93b/local/lib/python3.8/http/client.py", line 1250, in 
> endheaders
> [nodejs-12.18.3] self._send_output(message_body, 
> encode_chunked=encode_chunked)
> [nodejs-12.18.3]   File 
> "/opt/s/sage93b/local/lib/python3.8/http/client.py", line 1010, in 
> _send_output
> [nodejs-12.18.3] self.send(msg)
> [nodejs-12.18.3]   File 
> "/opt/s/sage93b/local/lib/python3.8/http/client.py", line 950, in send
> [nodejs-12.18.3] self.connect()
> [nodejs-12.18.3]   File 
> "/opt/s/sage93b/local/lib/python3.8/http/client.py", line 1424, in connect
> [nodejs-12.18.3] self.sock = self._context.wrap_socket(self.sock,
> [nodejs-12.18.3]   File "/opt/s/sage93b/local/lib/python3.8/ssl.py", line 
> 500, in wrap_socket
> [nodejs-12.18.3] return self.sslsocket_class._create(
> [nodejs-12.18.3]   File "/opt/s/sage93b/local/lib/python3.8/ssl.py", line 
> 1040, in _create
> [nodejs-12.18.3] self.do_handshake()
> [nodejs-12.18.3]   File "/opt/s/sage93b/local/lib/python3.8/ssl.py", line 
> 1309, in do_handshake
> [nodejs-12.18.3] self._sslobj.do_handshake()
> [nodejs-12.18.3] ssl.SSLCertVerificationError: [SSL: 
> CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local 
> issuer certificate (_ssl.c:1123)
> [nodejs-12.18.3]
> [nodejs-12.18.3] During handling of the above exception, another exception 
> occurred:
> [nodejs-12.18.3]
> [nodejs-12.18.3] Traceback (most recent call last):
> [nodejs-12.18.3]   File "/opt/s/sage93b/local/bin/nodeenv", line 8, in 
> 
> [nodejs-12.18.3] sys.exit(main())
> [nodejs-12.18.3]   File 
> "/opt/s/sage93b/local/lib/python3.8/site-packages/nodeenv.py", line 1046, 
> in main
> [nodejs-12.18.3] create_environment(env_dir, opt)
> [nodejs-12.18.3]   File 
> "/opt/s/sage93b/local/lib/python3.8/site-packages/nodeenv.py", line 935, in 
> create_environment
> [nodejs-12.18.3] install_node(env_dir, src_dir, opt)
> [nodejs-12.18.3]   File 
> "/opt/s/sage93b/local/lib/python3.8/site-packages/nodeenv.py", line 700, in 
> install_node
> [nodejs-12.18.3] install_node_wrapped(env_dir, src_dir, opt)
> [nodejs-12.18.3]   File 
> "/opt/s/sage93b/local/lib/python3.8/site-packages/nodeenv.py", line 722, in 
> install_node_wrapped
> [nodejs-12.18.3] download_node_src(node_url, src_dir, opt)
> [nodejs-12.18.3]   File 
> "/opt/s/sage93b/local/lib/python3.8/site-packages/nodeenv.py", line 553, in 
> download_node_src
> [nodejs-12.18.3] dl_contents = io.BytesIO(urlopen(node_url).read())
> [nodejs-12.18.3]   File 
> 

Re: [sage-release] Re: Sage 9.3.beta1 released

[Matthias Köppe]

On Friday, November 20, 2020 at 12:32:38 AM UTC-8 Dima Pasechnik wrote:

> Can one use nodejs from Homebrew instead? 
> (this is something we need to enable properly, via spkg-configure) 
>
>
Ticket https://trac.sagemath.org/ticket/30476, with the modest goal of just 
*documenting* how to get a fully functional Sage running in a system 
jupyter notebook or jupyterlab, needs help.




 

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Re: [sage-release] Sage 9.3.beta0 released

[Matthias Köppe]

On Sunday, November 1, 2020 at 7:29:31 AM UTC-8, David Coudert wrote:
>
> I’m unable to build beta0 on macOS 10.15.7 :(
>
> I did:
> $ make distclean
> $ ./bootstrap
> $ source .homebrew-build-env
> $ ./configure
> [...]
> I then tried
> $ make V=0 build
>
> but it fails.[...]
>
> The log file can be found here (too big for email apparently):
>
> https://filesender.renater.fr/?s=download=5cbf0701-548c-493e-920a-c22fb55cc7ab
>
> Let me know if something else is needed to understand the issue.
>

I see:

g++ -bundle -undefined dynamic_lookup -isysroot 
/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk 
-L/Users/dcoudert/sage/local/lib -Wl,-rpath,/Users/dcoudert/sage/local/lib 
build/temp.macosx-10.15-x86_64-3.9/build/cythonized/sage/libs/pynac/pynac.o 
-L/usr/local/Cellar/gsl/2.6/lib -L/usr/local/Cellar/openblas/0.3.10_1/lib 
-L/usr/local/lib -L/usr/local/opt/openssl@1.1/lib 
-L/usr/local/opt/sqlite/lib -lgsl -lgmp -lm -lopenblas -lpynac -o 
build/lib.macosx-10.15-x86_64-3.9/sage/libs/pynac/pynac.cpython-39-darwin.so
[156/524] creating 
build/temp.macosx-10.15-x86_64-3.9/build/cythonized/sage/libs/giac
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common 
-dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot 
/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk 
-I/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include 
-I/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers
 
-Isage/libs/giac -I./sage/cpython 
-I/Users/dcoudert/sage/local/lib/python3.9/site-packages/cysignals 
-I/Users/dcoudert/sage/build/pkgs/sagelib/src 
-I/usr/local/Cellar/python@3.9/3.9.0_1/Frameworks/Python.framework/Versions/3.9/include/python3.9
 
-I/Users/dcoudert/sage/local/lib/python3.9/site-packages/numpy/core/include 
-Ibuild/cythonized -I/usr/local/include 
-I/usr/local/opt/openssl@1.1/include -I/usr/local/opt/sqlite/include 
-I/Users/dcoudert/sage/local/include 
-I/usr/local/Cellar/python@3.9/3.9.0_1/Frameworks/Python.framework/Versions/3.9/include/python3.9
 
-c build/cythonized/sage/libs/giac/giac.cpp -o 
build/temp.macosx-10.15-x86_64-3.9/build/cythonized/sage/libs/giac/giac.o 
-fno-strict-aliasing -DCYTHON_CLINE_IN_TRACEBACK=1 -std=c++11
build/cythonized/sage/libs/giac/giac.cpp:674:10: fatal error: 'giac/giac.h' 
file not found
#include "giac/giac.h"
 ^
1 error generated.

Is this file present in your system?

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[sage-release] Re: Sage 9.2 released

[Matthias Köppe]

On Saturday, October 24, 2020 at 3:49:58 PM UTC-7, Volker Braun wrote:
>
> The "master" git branch has been updated to Sage-9.2. As always, you can 
> get the latest beta version from the "develop" git branch. Alternatively, 
> the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html
>
>
> 53285707f0 (tag: 9.2, trac/master, trac/develop) Updated SageMath version 
> to 9.2
> b41abf12c4 Trac #30805: Fix doctest errors/segfaults with system FLINT 2.6 
> (monsky_washnitzer)
> f048827559 Trac #30800: check system pari for qfisom bug
> f976c52c57 (tag: 9.2.rc3) Updated SageMath version to 9.2.rc3
>
>
Thanks, Volker, for preparing the release! 

The 9.2 changelog is available 
at https://github.com/sagemath/website/pull/208/files


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[sage-release] Re: Sage 9.2.rc1 released

[Matthias Köppe]

On Saturday, October 10, 2020 at 4:43:29 PM UTC-7, Volker Braun wrote:
>
> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html 
>
>
> 8eec238a73 (tag: 9.2.rc1, trac/develop) Updated SageMath version to 9.2.rc1
> a569b88f02 Trac #30740: Fix sage.feature.package_systems for Python 3.6
> f6250c2682 (tag: 9.2.rc0) Updated SageMath version to 9.2.rc0
>

Volker, thanks for preparing the new release candidate. Looks like we are 
converging. But I would hope that we can still get the positively reviewed 
"critical" tickets (only the ones that are marked "milestone 9.2") into the 
release.


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[sage-release] Re: Sage 9.2.beta13 released

[Matthias Köppe]

I just encountered this problem on my system as well. Somehow the 
installation of `setuptools_scm` had disappeared even though the 
installation record in local/var/lib/sage/installed was still there. `sage 
-f setuptools_scm` corrected this.


On Wednesday, September 23, 2020 at 12:57:30 PM UTC-7 Matthias Köppe wrote:

> This is likely from the most recent setuptools upgrade.
>
> Try if https://trac.sagemath.org/ticket/29500 fixes this for you.
>
> On Wednesday, September 23, 2020 at 2:58:38 AM UTC-7 
> jonatha...@googlemail.com wrote:
>
>> On ubuntu bionic incremental build  of  and dateutils fail.
>>
>> Those are the logs:
>>
>>  Found local metadata for zipp-0.5.2
>>2 Attempting to download package zipp-0.5.2.tar.gz from mirrors
>>3 
>> https://mirror.koddos.net/sagemath/spkg/upstream/zipp/zipp-0.5.2.tar.gz
>>4 
>> [..]
>>5 zipp-0.5.2
>>6 
>>7 Setting up build directory for zipp-0.5.2
>>8 Finished extraction
>>9 No patch files found in ../patches
>>   10 
>>   11 Host system:
>>   12 Linux kliem-ThinkPad-L570 4.15.0-115-generic #116-Ubuntu SMP Wed Aug 
>> 26 14:04:49 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux
>>   13 
>>   14 C compiler: gcc
>>   15 C compiler version:
>>   16 Using built-in specs.
>>   17 COLLECT_GCC=gcc
>>   18 COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper
>>   19 OFFLOAD_TARGET_NAMES=nvptx-none
>>   20 OFFLOAD_TARGET_DEFAULT=1
>>   21 Target: x86_64-linux-gnu
>>   22 Configured with: ../src/configure -v --with-pkgversion='Ubuntu 
>> 7.5.0-3ubuntu1~18.04' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs 
>> --enable-languages=c,ada,c++,go,brig +++,d,fortran,objc,obj-c++ 
>> --prefix=/usr --with-gcc-major-version-only --program-suffix=-7 
>> --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id 
>> --libexe +++cdir=/usr/lib --without-included-gettext 
>> --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap 
>> --enable-clocale=gnu --enable-libstdcxx-debug --enable-lib 
>> +++stdcxx-time=yes --with-default-libstdcxx-abi=new 
>> --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx 
>> --enable-plugin --enable-default-pie --with-system-zlib  
>> +++--with-target-system-zlib --enable-objc-gc=auto --enable-multiarch 
>> --disable-werror --with-arch-32=i686 --with-abi=m64 
>> --with-multilib-list=m32,m64,mx32 --enable-multilib - 
>> +++-with-tune=generic --enable-offload-targets=nvptx-none 
>> --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu 
>> --host=x86_64-linux-gnu --target=x86_64-linu +++x-gnu
>>   23 Thread model: posix
>>   24 gcc version 7.5.0 (Ubuntu 7.5.0-3ubuntu1~18.04)
>>   25 
>>   26 Package 'zipp' is currently not installed
>>   27 No legacy uninstaller found for 'zipp'; nothing to do
>>   28 Installing zipp-0.5.2
>>   29 WARNING: Retrying (Retry(total=4, connect=None, read=None, 
>> redirect=None, status=None)) after connection broken by 
>> 'ConnectTimeoutError(> +++nnection object at 0x7fd0fc6899d0>, 'Connection to 192.0.2.0 timed out. 
>> (connect timeout=15)')': /simple/setuptools-scm/
>>   30 WARNING: Retrying (Retry(total=3, connect=None, read=None, 
>> redirect=None, status=None)) after connection broken by 
>> 'ConnectTimeoutError(> +++nnection object at 0x7fd0fc6b4150>, 'Connection to 192.0.2.0 timed out. 
>> (connect timeout=15)')': /simple/setuptools-scm/
>>   31 WARNING: Retrying (Retry(total=2, connect=None, read=None, 
>> redirect=None, status=None)) after connection broken by 
>> 'ConnectTimeoutError(> +++nnection object at 0x7fd0fc6b42d0>, 'Connection to 192.0.2.0 timed out. 
>> (connect timeout=15)')': /simple/setuptools-scm/
>>   32 WARNING: Retrying (Retry(total=1, connect=None, read=None, 
>> redirect=None, status=None)) after connection broken by 
>> 'ConnectTimeoutError(> +++nnection object at 0x7fd0fc6b4490>, 'Connection to 192.0.2.0 timed out. 
>> (connect timeout=15)')': /simple/setuptools-scm/
>>   33 WARNING: Retrying (Retry(total=0, connect=None, read=None, 
>> redirect=None, status=None)) after connection broken by 
>> 'ConnectTimeoutError(> +++nnection object at 0x7fd0fc6b4650>, 'Connection to 192.0.2.0 timed out. 
>> (connect timeout=15)')': /simpl

[sage-release] Re: Sage 9.2.beta13 released

[Matthias Köppe]

This is likely from the most recent setuptools upgrade.

Try if https://trac.sagemath.org/ticket/29500 fixes this for you.

On Wednesday, September 23, 2020 at 2:58:38 AM UTC-7 
jonatha...@googlemail.com wrote:

> On ubuntu bionic incremental build  of  and dateutils fail.
>
> Those are the logs:
>
>  Found local metadata for zipp-0.5.2
>2 Attempting to download package zipp-0.5.2.tar.gz from mirrors
>3 
> https://mirror.koddos.net/sagemath/spkg/upstream/zipp/zipp-0.5.2.tar.gz
>4 
> [..]
>5 zipp-0.5.2
>6 
>7 Setting up build directory for zipp-0.5.2
>8 Finished extraction
>9 No patch files found in ../patches
>   10 
>   11 Host system:
>   12 Linux kliem-ThinkPad-L570 4.15.0-115-generic #116-Ubuntu SMP Wed Aug 
> 26 14:04:49 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux
>   13 
>   14 C compiler: gcc
>   15 C compiler version:
>   16 Using built-in specs.
>   17 COLLECT_GCC=gcc
>   18 COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper
>   19 OFFLOAD_TARGET_NAMES=nvptx-none
>   20 OFFLOAD_TARGET_DEFAULT=1
>   21 Target: x86_64-linux-gnu
>   22 Configured with: ../src/configure -v --with-pkgversion='Ubuntu 
> 7.5.0-3ubuntu1~18.04' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs 
> --enable-languages=c,ada,c++,go,brig +++,d,fortran,objc,obj-c++ 
> --prefix=/usr --with-gcc-major-version-only --program-suffix=-7 
> --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id 
> --libexe +++cdir=/usr/lib --without-included-gettext 
> --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap 
> --enable-clocale=gnu --enable-libstdcxx-debug --enable-lib 
> +++stdcxx-time=yes --with-default-libstdcxx-abi=new 
> --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx 
> --enable-plugin --enable-default-pie --with-system-zlib  
> +++--with-target-system-zlib --enable-objc-gc=auto --enable-multiarch 
> --disable-werror --with-arch-32=i686 --with-abi=m64 
> --with-multilib-list=m32,m64,mx32 --enable-multilib - 
> +++-with-tune=generic --enable-offload-targets=nvptx-none 
> --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu 
> --host=x86_64-linux-gnu --target=x86_64-linu +++x-gnu
>   23 Thread model: posix
>   24 gcc version 7.5.0 (Ubuntu 7.5.0-3ubuntu1~18.04)
>   25 
>   26 Package 'zipp' is currently not installed
>   27 No legacy uninstaller found for 'zipp'; nothing to do
>   28 Installing zipp-0.5.2
>   29 WARNING: Retrying (Retry(total=4, connect=None, read=None, 
> redirect=None, status=None)) after connection broken by 
> 'ConnectTimeoutError( +++nnection object at 0x7fd0fc6899d0>, 'Connection to 192.0.2.0 timed out. 
> (connect timeout=15)')': /simple/setuptools-scm/
>   30 WARNING: Retrying (Retry(total=3, connect=None, read=None, 
> redirect=None, status=None)) after connection broken by 
> 'ConnectTimeoutError( +++nnection object at 0x7fd0fc6b4150>, 'Connection to 192.0.2.0 timed out. 
> (connect timeout=15)')': /simple/setuptools-scm/
>   31 WARNING: Retrying (Retry(total=2, connect=None, read=None, 
> redirect=None, status=None)) after connection broken by 
> 'ConnectTimeoutError( +++nnection object at 0x7fd0fc6b42d0>, 'Connection to 192.0.2.0 timed out. 
> (connect timeout=15)')': /simple/setuptools-scm/
>   32 WARNING: Retrying (Retry(total=1, connect=None, read=None, 
> redirect=None, status=None)) after connection broken by 
> 'ConnectTimeoutError( +++nnection object at 0x7fd0fc6b4490>, 'Connection to 192.0.2.0 timed out. 
> (connect timeout=15)')': /simple/setuptools-scm/
>   33 WARNING: Retrying (Retry(total=0, connect=None, read=None, 
> redirect=None, status=None)) after connection broken by 
> 'ConnectTimeoutError( +++nnection object at 0x7fd0fc6b4650>, 'Connection to 192.0.2.0 timed out. 
> (connect timeout=15)')': /simple/setuptools-scm/
>   34 ERROR: Could not find a version that satisfies the requirement 
> setuptools_scm>=1.15.0 (from versions: none)
>   35 ERROR: No matching distribution found for setuptools_scm>=1.15.0
>   36 Traceback (most recent call last):
>   37   File 
> "/home/jonathan/Applications/sage/local/lib/python3.7/site-packages/setuptools/installer.py",
>  
> line 128, in fetch_build_egg
>   38 subprocess.check_call(cmd)
>   39   File "/usr/lib/python3.7/subprocess.py", line 363, in check_call
>   40 raise CalledProcessError(retcode, cmd)
>   41 subprocess.CalledProcessError: Command 
> '['/home/jonathan/Applications/sage/local/bin/python3', '-m', 'pip', 
> '--disable-pip-version-check', 'wheel', '--no-deps', '-w', '/tmp/tm 
> +++ph9pgk8lv', '--quiet', 'setuptools_scm>=1.15.0']' returned non-zero exit 
> status 1.
>   42 
>   43 The above exception was the 

[sage-release] Re: Sage 9.2.beta12 released

[Matthias Köppe]

On Wednesday, September 16, 2020 at 10:05:59 AM UTC-7 Samuel Lelievre wrote:

> [...]  what we should do about it is probably adapt the wording
> to better convey that. For instance:
>
> hint: installing the following system packages, if not already
> present, is recommended and may avoid building some SPKGs from
> source (though some may have to be built anyway):
> [...]
>

+1, ticket please
 

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Re: [sage-release] Sage 9.2.beta12 released

[Matthias Köppe]

On Friday, September 11, 2020 at 3:31:21 PM UTC-7, Dima Pasechnik wrote:
>
> Probably you want to configure with CC=clang CXX=clang++
>

That's actually not necessary. homebrew does not provide unversioned gcc 
and g++ executables, so gcc ->  /usr/bin/gcc and g++ -> /usr/bin/g++

 

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Re: [sage-release] Re: Sage 9.2.beta12 released

[Matthias Köppe]

On Friday, September 11, 2020 at 12:06:51 PM UTC-7, Markus Wageringel wrote:
>
> I think it might be better to stop the build earlier (and maybe ask for 
> confirmation) before proceeding to build Python, to avoid building Python 
> and all its dependencies a second time after installing OpenSSL. That is, 
> unless there is a reason to build Sage without OpenSSL. 
>

After the license change that will come with OpenSSL 3 
(https://trac.sagemath.org/ticket/29555), we can make openssl a standard 
package. 

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Re: [sage-release] Re: Sage 9.2.beta12 released

[Matthias Köppe]

On Friday, September 11, 2020 at 11:34:15 AM UTC-7, Markus Wageringel wrote:
>
> > Am 11.09.2020 um 20:17 schrieb Matthias Köppe  >: 
> > 
> > Is "libssl-dev" installed? (see build/pkgs/openssl/distros/debian.txt) 
>
>
(This is the name of the Debian package with the header files.) Check for 
files in /usr/include/openssl

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[sage-release] Re: Sage 9.2.beta12 released

[Matthias Köppe]

On Friday, September 11, 2020 at 10:55:57 AM UTC-7, Markus Wageringel wrote:
>
> With a clean build on Ubuntu 20.04, ptestlong passes, but Jupyter does not 
> start anymore due to an SSL problem, Which packages need to be installed 
> for this and why was this not a problem previously? OpenSSL is installed on 
> the system:
>
> $ openssl version
> OpenSSL 1.1.1f  31 Mar 2020
>
>
Is "libssl-dev" installed? (see build/pkgs/openssl/distros/debian.txt)
 

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[sage-release] Re: Sage 9.2.beta12 released

[Matthias Köppe]

On Friday, September 11, 2020 at 10:55:57 AM UTC-7, Markus Wageringel wrote:
>
> 9.2.beta11 has introduced crashes of the doctests in 
> `src/sage/interfaces/singular.py` that were reproducible on about 20% of 
> the test runs and have been observed by several other people as well. I 
> have tracked that issue down to the Pexpect upgrade in #29240 via 
> bisection. With 9.2.beta12 on the other hand, I cannot reproduce the 
> problem anymore, possibly because of the Python upgrade. There are still 
> reports about this with 9.2.beta12 though, so maybe this helps analyze the 
> problem.
>

Is singular crashing in these tests or Sage? If it's singular, it would be 
helpful to enable logging in the Pexpect interface and then trying to 
reproduce the errors without Sage


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Re: [sage-release] Sage 9.2.beta12 released

[Matthias Köppe]

On Thursday, September 10, 2020 at 10:08:32 AM UTC-7, Samuel Lelievre wrote:
>
> On a MacBook Air (early 2014) with 
> macOS 10.14.6 Mojave, with Homebrew 
> (but having removed Homebrew packages 
> gcc@9, python@3.7, arb, flint, gap, singular), 
> `make` succeeds but `make testlong` fails 
> unexpectedly still referring to python@3.7. 
>

"make distclean" and rebuilding should fix this

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Re: [sage-release] Sage 9.2.beta12 released

[Matthias Köppe]

On Thursday, September 10, 2020 at 6:52:09 AM UTC-7, Sébastien Labbé wrote:
>
> On Ubuntu 18.04, it picks up the python3.6 available on the machine:
>
> ##  ##
> ## Checking whether SageMath should install SPKG python3... ##
> ##  ##
> configure:29604: checking whether any of sqlite libpng bzip2 xz libffi is 
> installed as or will be installed as SPKG
> configure:29613: result: no
> configure:29623: checking for python3 >= 3.6, < 3.9 with modules sqlite3, 
> ctypes, math, hashlib, crypt, readline, socket, zlib, distutils.core
> configure:29629: result: 
> configure:29644: checking ... whether /usr/bin/python3.6 is good
>

Could you clarify if you expected it to use a different version of python?

>
> [dochtml]   File 
> "/home/slabbe/GitBox/sage/local/lib/python3.6/site-packages/sage_setup/docbuild/utils.py",
>  
> line 289, in build_many
> [dochtml] raise worker_exc.original_exception
> [dochtml] UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in 
> position 2661: ordinal not in range(128)
>
>
Looks like more locale trouble - see https://trac.sagemath.org/ticket/30053

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Re: [sage-release] Sage 9.2.beta12 released

[Matthias Köppe]

On Wednesday, September 9, 2020 at 3:08:31 PM UTC-7, Dima Pasechnik wrote:
>
>
> except that on macOS+Homebrew the latter wants the PATH like this:
>
> % cat ~/.zshrc
> export PATH="/usr/local/opt/python@3.7/bin:$PATH"
>
> I am not sure whether putting /usr/local/bin first won't break Homebrew.
>

Are you saying that a homebrew script put this in your .zshrc? 

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Re: [sage-release] Sage 9.2.beta12 released

[Matthias Köppe]

On Wednesday, September 9, 2020 at 2:23:36 PM UTC-7, Dima Pasechnik wrote:
>
> The autoconf macro in question is looping over the entries in the PATH 
> (and this is documented behaviour)
> So the outer loop is
>
> for as_dir in $PATH
>
> now, the PATH is a bit funny in my case:
>
>
> /usr/local/opt/gettext/bin:/usr/local/opt/gettext/bin:/usr/local/opt/python@3.7/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/Apple/usr/bin
>
>
> for each $as_dir it loops over the list of Pythons we provide,
>
> and the first match happens to be Python3.7, not Python3.8.
>

OK that's good to know. So users just need to adjust the PATH. 


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Re: [sage-release] Sage 9.2.beta12 released

[Matthias Köppe]

Very strange, can you run it with ./configure CONFIG_SHELL="bash -x" and 
post the output?

On Wednesday, September 9, 2020 at 1:17:04 PM UTC-7, Dima Pasechnik wrote:
>
>
>
> On Wed, Sep 9, 2020 at 9:04 PM Matthias Köppe  > wrote:
> >
> > Are you using a configure cache? Because according to your config.log, 
> it's only checking 1 binary
> I'm merely running 
>
> CC=clang CXX=clang++ ./configure --enable-download-from-upstream-url
>
> after I reverted 
>
> --- a/build/pkgs/python3/spkg-configure.m4
> +++ b/build/pkgs/python3/spkg-configure.m4
> @@ -12,7 +12,7 @@ SAGE_SPKG_CONFIGURE([python3], [
>  check_modules="sqlite3, ctypes, math, hashlib, crypt, readline, 
> socket, zlib, distutils.core"
>  AC_CACHE_CHECK([for python3 >= 3.6, < 3.9 with modules 
> $check_modules], [ac_cv_path_PYTHON3], [
>  AC_MSG_RESULT([])
> -AC_PATH_PROGS_FEATURE_CHECK([PYTHON3], [python3.8 python3.7 
> python3.6 python3], [
> +AC_PATH_PROGS_FEATURE_CHECK([PYTHON3], [python3.8], 
>  AC_MSG_CHECKING([... whether $ac_path_PYTHON3 is good])
>  python3_version=`"$ac_path_PYTHON3" --version 2>&1 \
>  | $SED -n -e 
> 's/\([[0-9]]*\.[[0-9]]*\.[[0-9]]*\).*/\1/p'`
>
> with which it duly picked up python3.8, I re-run ./bootstrap and
> the above configure command, and then python3.7 gets picked up.
>
> Perhaps it's a (mis)feature of AC_CACHE_CHECK?
> >
> > On Wednesday, September 9, 2020 at 12:58:26 PM UTC-7, Dima Pasechnik 
> wrote:
> >>
> >> On Wed, Sep 9, 2020 at 8:54 PM Matthias Köppe  
> wrote:
> >> >
> >> > Is "python3.8" in PATH?
> >> of course.
> >>
> >> dima@oucl13243 sagetrac-mirror % python3
> >> Python 3.7.8 (default, Jul  8 2020, 14:18:28)
> >> [Clang 11.0.3 (clang-1103.0.32.62)] on darwin
> >> Type "help", "copyright", "credits" or "license" for more information.
> >> >>>
> >>
> >> dima@oucl13243 sagetrac-mirror % python3.8
> >> Python 3.8.5 (default, Jul 21 2020, 10:48:26)
> >> [Clang 11.0.3 (clang-1103.0.32.62)] on darwin
> >> Type "help", "copyright", "credits" or "license" for more information.
> >> >>>
> >>
> >> dima@oucl13243 sagetrac-mirror % python3.7
> >> Python 3.7.8 (default, Jul  8 2020, 14:18:28)
> >> [Clang 11.0.3 (clang-1103.0.32.62)] on darwin
> >> Type "help", "copyright", "credits" or "license" for more information.
> >>
> >> >>>
> >>
> >> >
> >> > On Wednesday, September 9, 2020 at 12:44:50 PM UTC-7, Dima Pasechnik 
> wrote:
> >> >>
> >> >> here it is. The account shell is zsh, but this most probably does 
> not matter.
> >> >>
> >> >> On Wed, Sep 9, 2020 at 6:31 PM Matthias Köppe  
> wrote:
> >> >> >
> >> >> > On Wednesday, September 9, 2020 at 10:11:14 AM UTC-7, Dima 
> Pasechnik wrote:
> >> >> >>
> >> >> >> by the way, I am not able to pick up Homebrew's python3.8 in the 
> presence of python3.7, unless I modify python3's spkg-configure.m4 to 
> exclude python3.7 and python3 from the list of Pythons it checks for.
> >> >> >>>
> >> >> >>>
> >> >> >
> >> >> > config.log?
> >> >> >
> >> >> >
> >> >> > --
> >> >> > You received this message because you are subscribed to the Google 
> Groups "sage-release" group.
> >> >> > To unsubscribe from this group and stop receiving emails from it, 
> send an email to sage-r...@googlegroups.com.
> >> >> > To view this discussion on the web visit 
> https://groups.google.com/d/msgid/sage-release/fead00fa-099a-4119-858f-1168a8481aeao%40googlegroups.com
> .
> >> >
> >> > --
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> >> > To unsubscribe from this group and stop receiving emails from it, 
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> https://groups.google.com/d/msgid/sage-release/2315e53f-5d2c-4c44-b8bf-1f3940bac109o%40googlegroups.com
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Re: [sage-release] Sage 9.2.beta12 released

[Matthias Köppe]

Are you using a configure cache? Because according to your config.log, it's 
only checking 1 binary

On Wednesday, September 9, 2020 at 12:58:26 PM UTC-7, Dima Pasechnik wrote:
>
> On Wed, Sep 9, 2020 at 8:54 PM Matthias Köppe  > wrote: 
> > 
> > Is "python3.8" in PATH? 
> of course. 
>
> dima@oucl13243 sagetrac-mirror % python3 
> Python 3.7.8 (default, Jul  8 2020, 14:18:28) 
> [Clang 11.0.3 (clang-1103.0.32.62)] on darwin 
> Type "help", "copyright", "credits" or "license" for more information. 
> >>> 
>
> dima@oucl13243 sagetrac-mirror % python3.8 
> Python 3.8.5 (default, Jul 21 2020, 10:48:26) 
> [Clang 11.0.3 (clang-1103.0.32.62)] on darwin 
> Type "help", "copyright", "credits" or "license" for more information. 
> >>> 
>
> dima@oucl13243 sagetrac-mirror % python3.7 
> Python 3.7.8 (default, Jul  8 2020, 14:18:28) 
> [Clang 11.0.3 (clang-1103.0.32.62)] on darwin 
> Type "help", "copyright", "credits" or "license" for more information. 
>
> >>> 
>
> > 
> > On Wednesday, September 9, 2020 at 12:44:50 PM UTC-7, Dima Pasechnik 
> wrote: 
> >> 
> >> here it is. The account shell is zsh, but this most probably does not 
> matter. 
> >> 
> >> On Wed, Sep 9, 2020 at 6:31 PM Matthias Köppe  
> wrote: 
> >> > 
> >> > On Wednesday, September 9, 2020 at 10:11:14 AM UTC-7, Dima Pasechnik 
> wrote: 
> >> >> 
> >> >> by the way, I am not able to pick up Homebrew's python3.8 in the 
> presence of python3.7, unless I modify python3's spkg-configure.m4 to 
> exclude python3.7 and python3 from the list of Pythons it checks for. 
> >> >>> 
> >> >>> 
> >> > 
> >> > config.log? 
> >> > 
> >> > 
> >> > -- 
> >> > You received this message because you are subscribed to the Google 
> Groups "sage-release" group. 
> >> > To unsubscribe from this group and stop receiving emails from it, 
> send an email to sage-r...@googlegroups.com. 
> >> > To view this discussion on the web visit 
> https://groups.google.com/d/msgid/sage-release/fead00fa-099a-4119-858f-1168a8481aeao%40googlegroups.com.
>  
>
> > 
> > -- 
> > You received this message because you are subscribed to the Google 
> Groups "sage-release" group. 
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> an email to sage-r...@googlegroups.com . 
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>  
>
>

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Re: [sage-release] Sage 9.2.beta12 released

[Matthias Köppe]

Is "python3.8" in PATH?

On Wednesday, September 9, 2020 at 12:44:50 PM UTC-7, Dima Pasechnik wrote:
>
> here it is. The account shell is zsh, but this most probably does not 
> matter. 
>
> On Wed, Sep 9, 2020 at 6:31 PM Matthias Köppe  > wrote: 
> > 
> > On Wednesday, September 9, 2020 at 10:11:14 AM UTC-7, Dima Pasechnik 
> wrote: 
> >> 
> >> by the way, I am not able to pick up Homebrew's python3.8 in the 
> presence of python3.7, unless I modify python3's spkg-configure.m4 to 
> exclude python3.7 and python3 from the list of Pythons it checks for. 
> >>> 
> >>> 
> > 
> > config.log? 
> > 
> > 
> > -- 
> > You received this message because you are subscribed to the Google 
> Groups "sage-release" group. 
> > To unsubscribe from this group and stop receiving emails from it, send 
> an email to sage-r...@googlegroups.com . 
> > To view this discussion on the web visit 
> https://groups.google.com/d/msgid/sage-release/fead00fa-099a-4119-858f-1168a8481aeao%40googlegroups.com.
>  
>
>

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[sage-release] Re: Sage 9.2.beta12 released

[Matthias Köppe]

On Tuesday, September 8, 2020 at 9:23:04 PM UTC-7, Matthias Köppe wrote:
>
> conda-forge-macos-standard (
> https://github.com/sagemath/sage/runs/1078909711): 
>   [sagelib-9.2.beta12]  
>  
> /Users/runner/work/sage/sage/.tox/local-conda-forge-macos-standard/local/include/*linbox/algorithms/det-rational.h:96:39:
>  
> error: no viable overloaded '='*
> *  [sagelib-9.2.beta12]   void detMul (const Integer& m) 
> {mul = m;} [...]*
>
> I have created https://trac.sagemath.org/ticket/30535 for this
>
> Fixed, needs review

 

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Re: [sage-release] Sage 9.2.beta12 released

[Matthias Köppe]

On Wednesday, September 9, 2020 at 10:11:14 AM UTC-7, Dima Pasechnik wrote:
>
> by the way, I am not able to pick up Homebrew's python3.8 in the presence 
> of python3.7, unless I modify python3's spkg-configure.m4 to exclude 
> python3.7 and python3 from the list of Pythons it checks for.
>
>>
>>
config.log?
 

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Re: [sage-release] Sage 9.2.beta12 released

[Matthias Köppe]

On Wednesday, September 9, 2020 at 8:35:10 AM UTC-7, David Coudert wrote:
>
> The traces of fortran 9 (and actually gcc 9) are due 
> to .homebrew-build-env. which contains: 
>
> for l in "gcc@9/lib/gcc/9"; do
> if [ -d "$HOMEBREW/opt/$l" ]; then
> LIBRARY_PATH="$HOMEBREW/opt/$l:$LIBRARY_PATH"
> fi
> done
>

For that, see https://trac.sagemath.org/ticket/30536 



 

>
>
> Le 9 sept. 2020 à 17:01, Dima Pasechnik > 
> a écrit :
>
> ok, you have a non-standard arb in your Homebrew install.
>
> you need to reinstall it, or perhaps better just remove it.
>
> you also have traces of gfortran 9 in LIBRARY_PATH - investigate and 
> clean...
>
> On Wed, 9 Sep 2020, 15:57 david@gmail.com,  > wrote:
>
>> I can try to install ntl and flint, but then I have to remove 
>> dependencies as well, right ?
>>
>> sapristi:sage dcoudert$ brew uninstall ntl flint
>> Error: Refusing to uninstall /usr/local/Cellar/flint/2.6.3
>> because it is required by arb, which is currently installed.
>> You can override this and force removal with:
>>   brew uninstall --ignore-dependencies ntl flint
>>
>>
>> Le mercredi 9 septembre 2020 à 16:53:47 UTC+2, matthia...@gmail.com a 
>> écrit :
>>
>>> On Wednesday, September 9, 2020 at 2:49:19 AM UTC-7, david@gmail.com 
>>> wrote:

 If I understand well, I’m facing the case (not completely sure): 
 homebrew-macos-python3_xcode-gcc_spkg-{minimal,standard}: Various build 
 errors (ignore for Sage 9.2)

 That is: macOS 10.15.6 with clang version 11.0.3 (clang-1103.0.32.62) 
 and all recommended packages installed with homebrew, and unable to 
 compile 
 beta12.


>>> Actually your configuration is "homebrew-macos-standard" with probably 
>>> some extra homebrew packages installed. 
>>>
>>> (The configuration factor "gcc_spkg" refers to using gcc 9.2 from our 
>>> SPKG instead of Xcode "gcc" (clang).)
>>>
>>> My guess is that if you uninstall homebrew's ntl and flint packages and 
>>> build from scratch (distclean), the build would go through.
>>>
>>> https://trac.sagemath.org/ticket/27764 and tickets referenced within 
>>> address the NTL / thread-local storage issues.
>>>
>>>
>>>
>>>
>> -- 
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>> https://groups.google.com/d/msgid/sage-release/6dd4e7b4-164c-4b99-b91e-e759c4a8f14fn%40googlegroups.com
>>  
>> 
>> .
>>
>
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>  
> 
> .
>
>
>

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Re: [sage-release] Sage 9.2.beta12 released

[Matthias Köppe]

On Wednesday, September 9, 2020 at 2:49:19 AM UTC-7, david@gmail.com 
wrote:
>
> If I understand well, I’m facing the case (not completely sure): 
> homebrew-macos-python3_xcode-gcc_spkg-{minimal,standard}: Various build 
> errors (ignore for Sage 9.2)
>
> That is: macOS 10.15.6 with clang version 11.0.3 (clang-1103.0.32.62) and 
> all recommended packages installed with homebrew, and unable to compile 
> beta12.
>
>
Actually your configuration is "homebrew-macos-standard" with probably some 
extra homebrew packages installed. 

(The configuration factor "gcc_spkg" refers to using gcc 9.2 from our SPKG 
instead of Xcode "gcc" (clang).)

My guess is that if you uninstall homebrew's ntl and flint packages and 
build from scratch (distclean), the build would go through.

https://trac.sagemath.org/ticket/27764 and tickets referenced within 
address the NTL / thread-local storage issues.



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[sage-release] Re: Sage 9.2.beta12 released

[Matthias Köppe]

On Sunday, September 6, 2020 at 10:21:19 PM UTC-7, Matthias Köppe wrote:
>
> On Sunday, September 6, 2020 at 4:25:39 PM UTC-7, Volker Braun wrote:
>>
>> As always, you can get the latest beta version from the "develop" git 
>> branch. Alternatively, the self-contained source tarball is at 
>> http://www.sagemath.org/download-latest.html 
>>
>
>> 5ec24db181 (tag: 9.2.beta12, trac/develop) Updated SageMath version to 
>> 9.2.beta12
>>
>>
> Tests have started at https://github.com/sagemath/sage/actions 
>

*macOS* results:  All runs have a number of timeouts in doctests.

*homebrew*-macos-{minimal, standard} (= build with homebrew python3.8):
sage -t --random-seed=0 src/sage/interfaces/gap.py  # 1 doctest failed

homebrew-macos-python3_xcode-minimal: Clean

homebrew-macos-python3_xcode-standard:
sage -t --random-seed=0 src/sage/interfaces/gap.py  # 1 doctest failed

homebrew-macos-python3_xcode-nokegonly-standard: Error building R:
configure: error: in 
`/Users/runner/work/sage/sage/.tox/local-homebrew-macos-python3_xcode-nokegonly-standard/local/var/tmp/sage/build/r-3.6.3/src':
*configure: error: linking to Fortran libraries from C fails*
Looks like this build is still using gfortran-9

homebrew-macos-python3_pythonorg-minimal:
sage -t --random-seed=0 src/sage/interfaces/gap.py  # 1 doctest failed

homebrew-macos-python3_xcode-gcc_spkg-{minimal,standard}: Various build 
errors (ignore for Sage 9.2)

homebrew-macos with xcode-12 beta: Various build errors, tracked at 
https://trac.sagemath.org/ticket/30494 (ignore for Sage 9.2)

*conda-forge*-macos-minimal: python3 build fails:
configure: error: Cross compiling required --host=HOST-TUPLE and 
--build=ARCH

conda-forge-macos-standard 
(https://github.com/sagemath/sage/runs/1078909711): 
  [sagelib-9.2.beta12]  
 
/Users/runner/work/sage/sage/.tox/local-conda-forge-macos-standard/local/include/*linbox/algorithms/det-rational.h:96:39:
 
error: no viable overloaded '='*
*  [sagelib-9.2.beta12]   void detMul (const Integer& m) 
{mul = m;}*
  [sagelib-9.2.beta12]  
 ~~~ ^ ~
  [sagelib-9.2.beta12]  
 
/Users/runner/work/sage/sage/.tox/local-conda-forge-macos-standard/conda/include/gmp++/gmp++_int.h:236:34:
 
note: candidate function not viable: 'this' argument has type 'const 
LinBox::Integer' (aka 'const Givaro::Integer'), but method is not marked 
const
  [sagelib-9.2.beta12]   giv_all_inlined Integer& operator = (const 
Integer& n);
  [sagelib-9.2.beta12]^
  [sagelib-9.2.beta12]  
 build/cythonized/sage/matrix/matrix_integer_sparse.cpp:12289:35: warning: 
comparison of integers of different signs: 'size_t' (aka 'unsigned long') 
and 'long' [-Wsign-compare]
  [sagelib-9.2.beta12] for (__pyx_t_12 = 0; __pyx_t_12 < __pyx_t_11; 
__pyx_t_12+=1) {
  [sagelib-9.2.beta12]  ~~ ^ ~~
  [sagelib-9.2.beta12]   1 warning and 2 errors generated.
  [sagelib-9.2.beta12]   error: command 'x86_64-apple-darwin13.4.0-clang' 
failed with exit status 1

I have created https://trac.sagemath.org/ticket/30535 for this



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[sage-release] Re: Sage 9.2.beta12 released

[Matthias Köppe]

On Sunday, September 6, 2020 at 10:21:19 PM UTC-7, Matthias Köppe wrote:
>
> On Sunday, September 6, 2020 at 4:25:39 PM UTC-7, Volker Braun wrote:
>>
>> As always, you can get the latest beta version from the "develop" git 
>> branch. Alternatively, the self-contained source tarball is at 
>> http://www.sagemath.org/download-latest.html 
>>
>
>> 5ec24db181 (tag: 9.2.beta12, trac/develop) Updated SageMath version to 
>> 9.2.beta12
>>
>>
> Tests have started at https://github.com/sagemath/sage/actions 
>

*Cygwin* results:

cygwin-standard (https://github.com/sagemath/sage/runs/1079702566): 
*  [sagelib-9.2.beta12]   error: command 'g++' failed with exit status 1*
(No g++ error message to be seen; this is 
https://trac.sagemath.org/ticket/30396)

*This needs urgent help by someone who has a Windows development box.*

cygwin-minimal (https://github.com/sagemath/sage/runs/1079395893):
Times out in stage-ii-a, stage-ii-c - needs repartitioning




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[sage-release] Re: Sage 9.2.beta12 released

[Matthias Köppe]

On Sunday, September 6, 2020 at 10:21:19 PM UTC-7, Matthias Köppe wrote:
>
> On Sunday, September 6, 2020 at 4:25:39 PM UTC-7, Volker Braun wrote:
>>
>> As always, you can get the latest beta version from the "develop" git 
>> branch. Alternatively, the self-contained source tarball is at 
>> http://www.sagemath.org/download-latest.html 
>>
>
>> 5ec24db181 (tag: 9.2.beta12, trac/develop) Updated SageMath version to 
>> 9.2.beta12
>> Tests have started at https://github.com/sagemath/sage/actions . 
>>
>
*debian*-{jessie,stretch,buster} : Clean 

debian-{bullseye,sid}-minimal: Clean

debian-{bullseye,sid}-standard: doctest failures similar to 
ubuntu-groovy-standard

*debian-buster-i386-standard*: Clean

*linuxmint*-17 (https://github.com/sagemath/sage/runs/1078907871): *Lots of 
doctest failures due to setlocale messages. *(A lot of discussion at 
https://trac.sagemath.org/ticket/30053)

linuxmint-{18,19,19.3}: Clean

*fedora*-{26, 32}: Clean

fedora-{27,28,29,30,31,33}-minimal: Clean (but some exceed 6h while in 
doctests)

fedora-{27,29}-standard (https://github.com/sagemath/sage/runs/1078907974): 
sage -t --random-seed=0 src/sage/lfunctions/sympow.py  # 3 doctests failed
sage -t --random-seed=0 
src/sage/schemes/elliptic_curves/ell_rational_field.py  # 2 doctests failed

fedora-28-standard (https://github.com/sagemath/sage/runs/1078907994): 
Test failures in cvxopt
sage -t --random-seed=0 src/sage/lfunctions/sympow.py  # 3 doctests failed
sage -t --random-seed=0 src/sage/rings/polynomial/groebner_fan.py  # 3 
doctests failed
sage -t --random-seed=0 
src/sage/schemes/elliptic_curves/ell_rational_field.py  # 2 doctests failed

fedora-33-standard (https://github.com/sagemath/sage/runs/1078908107):
  [arb-2.16.0.p0]  
 /sage/local/var/tmp/sage/build/arb-2.16.0.p0/src/fmpr.h:25:10: fatal 
error: flint/config.h: No such file or directory
  [arb-2.16.0.p0]  25 | #include "flint/config.h"
  [arb-2.16.0.p0] |  ^~~~
  [arb-2.16.0.p0]   compilation terminated.

*centos*-{7,8}: Clean

*gentoo*: Clean

gentoo-python3.7: Clean

*archlinux*-minimal: Clean

archlinux-standard (https://github.com/sagemath/sage/runs/1078908183): 
sage -t --random-seed=0 src/sage/interfaces/quit.py  # 1 doctest failed

*slackware*-14.2-minimal (https://github.com/sagemath/sage/runs/1078908190
): 
[libs ] WARNING: autodoc: failed to import module 'giac' from module 
'sage.libs'; the following exception was raised:
[libs ] libsasl2.so.3: cannot open shared object file: No such file or 
directory

slackware-14.2-standard: Clean

*conda-forge*-minimal (https://github.com/sagemath/sage/runs/1078908216):
Error building python3, Failures testing package symmetrica

conda-forge-standard (https://github.com/sagemath/sage/runs/1078908224):
sage -t --random-seed=0 src/doc/en/constructions/algebraic_geometry.rst  # 
1 doctest failed
sage -t --random-seed=0 src/doc/en/developer/coding_in_other.rst  # 1 
doctest failed
sage -t --random-seed=0 src/sage/misc/cython.py  # 3 doctests failed
sage -t --random-seed=0 src/sage/modules/fg_pid/fgp_module.py  # 3 doctests 
failed
sage -t --random-seed=0 src/sage/modules/free_module_morphism.py  # 3 
doctests failed
sage -t --random-seed=0 src/sage/rings/complex_arb.pyx  # 6 doctests failed
sage -t --random-seed=0 src/sage/rings/real_arb.pyx  # 2 doctests failed
sage -t --random-seed=0 
src/sage/schemes/hyperelliptic_curves/monsky_washnitzer.py  # Killed due to 
abort

conda-forge-ubuntu-standard (
https://github.com/sagemath/sage/runs/1078909743): 
  [pillow-7.2.0]   In file included from 
/home/runner/work/sage/sage/.tox/local-conda-forge-ubuntu-standard/conda/include/python3.7m/Python.h:11:0,
  [pillow-7.2.0]from src/_imagingmorph.c:14:
  [pillow-7.2.0]   /usr/include/limits.h:26:10: fatal error: 
bits/libc-header-start.h: No such file or directory
  [pillow-7.2.0]#include 
  [pillow-7.2.0] ^~
  [pillow-7.2.0]   compilation terminated.
  [pillow-7.2.0]   error: command 
'/home/runner/work/sage/sage/.tox/local-conda-forge-ubuntu-standard/conda/bin/x86_64-conda-linux-gnu-cc'
 
failed with exit status 1




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[sage-release] Re: Sage 9.2.beta12 released

[Matthias Köppe]

On Sunday, September 6, 2020 at 4:25:39 PM UTC-7, Volker Braun wrote:
>
> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html 
>

> 5ec24db181 (tag: 9.2.beta12, trac/develop) Updated SageMath version to 
> 9.2.beta12
>
>
Thanks for preparing the new beta.

Testers, please note that this beta contains the *Python 3.8 upgrade* from 
https://trac.sagemath.org/ticket/27754, so if previous betas rejected your 
distribution's python 3.8, it would make sense to do a "make python3-clean" 
before rebuilding.


Tests have started at https://github.com/sagemath/sage/actions . First 
results:

*ubuntu*-{trusty, xenial, focal}: clean

ubunt-{bionic,eoan, groovy}-minimal: clean

ubuntu-bionic-standard (https://github.com/sagemath/sage/runs/1078907737 
):
  [dochtml]   UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in 
position 2661: ordinal not in range(128)
  [dochtml] Full log file: logs/dochtml.log
Makefile:1874: recipe for target 'doc-html' failed

ubuntu-eoan-standard (https://github.com/sagemath/sage/runs/1078907750)
sage -t --random-seed=0 src/sage/libs/eclib/interface.py  # 2 doctests 
failed

ubuntu-groovy-standard (https://github.com/sagemath/sage/runs/107890): 
sage -t --random-seed=0 src/doc/en/constructions/algebraic_geometry.rst  # 
1 doctest failed
sage -t --random-seed=0 src/doc/en/developer/coding_in_other.rst  # 1 
doctest failed
sage -t --random-seed=0 src/sage/interfaces/singular.py  # Killed due to 
segmentation fault
sage -t --random-seed=0 src/sage/modules/fg_pid/fgp_module.py  # 3 doctests 
failed
sage -t --random-seed=0 src/sage/modules/free_module_morphism.py  # 3 
doctests failed
sage -t --random-seed=0 src/sage/rings/complex_arb.pyx  # 6 doctests failed
sage -t --random-seed=0 src/sage/rings/real_arb.pyx  # 2 doctests failed
sage -t --random-seed=0 
src/sage/schemes/hyperelliptic_curves/monsky_washnitzer.py  # Killed due to 
abort


Tests for *optional packages* are running at 
https://github.com/sagemath/sage/actions/runs/242113003

As noted in https://trac.sagemath.org/ticket/29900, many optional packages 
fail to build. I propose that we do a *mass downgrade of broken optional 
packages to experimental status* in https://trac.sagemath.org/ticket/30349, 
based on the test results of this beta.


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[sage-release] Re: Sage 9.2.beta11 released

[Matthias Köppe]

On Thursday, September 3, 2020 at 7:07:44 PM UTC-7, Kwankyu Lee wrote:
>
> Hi,
>
> I am failing to build from scratch Sage 9.2 beta11 since beta10 or perhaps 
> even earlier beta. My system is macOS 10.15.6 with Xcode 11.7. ...
> $ gcc --version
> Configured with: --prefix=/Library/Developer/CommandLineTools/usr 
> --with-gxx-include-dir=/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include/c++/4.2.1
> Apple clang version 12.0.0 (clang-1200.0.31.1)
> Target: x86_64-apple-darwin19.6.0
>
>
Looks like the command line tools might actually be Xcode 12 beta. This is 
not supported yet -- see https://trac.sagemath.org/ticket/30494 (which 
needs help)



 

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Re: [sage-release] Re: Sage 9.2.beta7 released

[Matthias Köppe]

We already override many of these paths in our spkg-install script via 
environment variables

On Tuesday, August 18, 2020 at 1:30:12 AM UTC-7, Dima Pasechnik wrote:
>
> I've tracked it down to some weirdness in cvxopt's setup.py and opened 
> https://github.com/cvxopt/cvxopt/issues/174 
>
> cvxopt's setup tries to figure out exact paths to system libraries by 
> going through a fixed list, 
> which does not include the corresponding locations for ARM CPUs on 
> Debian/Raspberry Pi 
> These locations need not be set at all, as the linker knows them. 
>
>
>
> On Mon, Aug 17, 2020 at 11:50 PM Matthias Köppe 
> > wrote: 
> > 
> > cvxopt build is also known to fail on i386 (
> https://trac.sagemath.org/ticket/30052) 
> > 
> > On Monday, August 17, 2020 at 1:06:45 PM UTC-7, Jaap Spies wrote: 
> >> 
> >> On my Raspberry Pi 4 8GB build fails on cvxopt 
> >> 
> >> * package: cvxopt-1.2.3 
> >>   last build time: Aug 17 14:34 
> >>   log file:   
>  /home/pi/sagemath/sage-9.2.beta7/logs/pkgs/cvxopt-1.2.3.log 
> >>   build directory: 
> /home/pi/sagemath/sage-9.2.beta7/local/var/tmp/sage/build/cvxopt-1.2.3 
> >> 
> >> 
> >> On Monday, August 3, 2020 at 12:16:18 AM UTC+1, Volker Braun wrote: 
> >>> 
> >>> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html 
> >>> 
> >>> 
> >>> 83caa4befa (tag: 9.2.beta7, trac/develop) Updated SageMath version to 
> 9.2.beta7 
> >>> acf026331e Trac #30228: Declare Sections with Name only 
> >>> 2279b17f42 Trac #30191: failed conversion yields unconclusive error 
> message 
> >>> 2f083dc4d9 Trac #30185: Upgrade pillow to 7.2.0 
> >>> d0505272b4 Trac #30173: ECL 20.4.24: More trouble with makeinfo 
> >>> 8a27369699 Trac #30108: Not equal comparison for mixed forms 
> >>> d14a2c5705 Trac #30094: Basis-dependent isomorphism from 
> FiniteRankFreeModule to an object in the category ModulesWithBasis 
> >>> 653d0f4d75 Trac #30062: Rename MetricSpaces parent method metric to 
> metric_function, add EuclideanSpace to category of metric spaces 
> >>> c1c4e1ce54 Trac #30061: Speed up constructing high-dimensional 
> Euclidean spaces 
> >>> 2e58bf7d39 Trac #30039: Implement weighted version of 2Dsweep and 
> DiFUB 
> >>> ca983afc25 Trac #29944: MR45: Do not pretend to build Python 2 docker 
> images 
> >>> d91a2379ad Trac #29686: Add classes to FinitePoset for specific 
> families of posets 
> >>> cb561dbab0 Trac #29512: Ideals for Laurent polynomial rings 
> >>> a901400536 Trac #29441: upgrade rpy2 package 2.8.2 -> 3.3.5, upgrade R 
> to 3.6.3, add new dependencies 
> >>> 2fd5c176e0 Trac #29334: r_jupyter script package needs SPKG.rst 
> >>> f94ac663e2 Trac #29506: Backend for Hyperplane Arrangements 
> >>> 0f1e9125cb Trac #30114: add missing colons in padics documentation 
> >>> 9b2e764ec3 Trac #30074: Speedups for symbolic assumptions 
> >>> 9c5b18502d Trac #29777: xgcd for polynomials over padic rings 
> >>> a1c3b4863f Trac #29694: conflict between lazy attribute and abstract 
> method tester 
> >>> b274faf834 Trac #29194: Three.js-based Animations 
> >>> cc7fa7d3d4 Trac #28959: Upgrade zn_poly to v0.9.2 
> >>> 61f77810d5 Trac #30215: VectorSpaces: Add a parent method dimension 
> >>> 4492d28949 Trac #30204: Prepare Polyhedra parent factory to handle 
> more general ambient spaces 
> >>> 95d311d3e6 Trac #30195: tox.ini: Add centos-6, docker-nobootstrap, 
> manylinux-* 
> >>> 7be09f6cb4 Trac #30180: Category Modules should provide a parent 
> method module_morphism compatible with ModulesWithBasis.module_morphism 
> >>> abd54ac815 Trac #30179: ModulesWithBasis.linear_combination should be 
> a method of Modules 
> >>> d8b44dd7ab Trac #30170: Make morphisms of metric spaces metric maps 
> >>> 77b837593e Trac #30166: Cartesian products of metric, topological 
> spaces 
> >>> ddee54841f Trac #30162: Make doctests accept Python 3.8.x respellings 
> of some error messages 
> >>> 37c62d2fc8 Trac #30161: Zero Matrix has Inverse over Finite Field 
> >>> d35315a114 Trac #30157: Cygwin: system sqlite3 modifies DLL search 
> order 
> >>> e561663dd6 Trac #30155: Remove broken experimental package scons 
> >>> a87c4b3c0b Trac #30149: Cygwin: problem with DLL search order when 
> 

[sage-release] Re: Sage 9.2.beta7 released

[Matthias Köppe]

cvxopt build is also known to fail on i386 (
https://trac.sagemath.org/ticket/30052)

On Monday, August 17, 2020 at 1:06:45 PM UTC-7, Jaap Spies wrote:
>
> On my Raspberry Pi 4 8GB build fails on cvxopt
>
> * package: cvxopt-1.2.3
>   last build time: Aug 17 14:34
>   log file:
> /home/pi/sagemath/sage-9.2.beta7/logs/pkgs/cvxopt-1.2.3.log
>   build directory: 
> /home/pi/sagemath/sage-9.2.beta7/local/var/tmp/sage/build/cvxopt-1.2.3
>
>
> On Monday, August 3, 2020 at 12:16:18 AM UTC+1, Volker Braun wrote:
>>
>> As always, you can get the latest beta version from the "develop" git 
>> branch. Alternatively, the self-contained source tarball is at 
>> http://www.sagemath.org/download-latest.html 
>>
>>
>> 83caa4befa (tag: 9.2.beta7, trac/develop) Updated SageMath version to 
>> 9.2.beta7
>> acf026331e Trac #30228: Declare Sections with Name only
>> 2279b17f42 Trac #30191: failed conversion yields unconclusive error 
>> message
>> 2f083dc4d9 Trac #30185: Upgrade pillow to 7.2.0
>> d0505272b4 Trac #30173: ECL 20.4.24: More trouble with makeinfo
>> 8a27369699 Trac #30108: Not equal comparison for mixed forms
>> d14a2c5705 Trac #30094: Basis-dependent isomorphism from 
>> FiniteRankFreeModule to an object in the category ModulesWithBasis
>> 653d0f4d75 Trac #30062: Rename MetricSpaces parent method metric to 
>> metric_function, add EuclideanSpace to category of metric spaces
>> c1c4e1ce54 Trac #30061: Speed up constructing high-dimensional Euclidean 
>> spaces
>> 2e58bf7d39 Trac #30039: Implement weighted version of 2Dsweep and DiFUB
>> ca983afc25 Trac #29944: MR45: Do not pretend to build Python 2 docker 
>> images
>> d91a2379ad Trac #29686: Add classes to FinitePoset for specific families 
>> of posets
>> cb561dbab0 Trac #29512: Ideals for Laurent polynomial rings
>> a901400536 Trac #29441: upgrade rpy2 package 2.8.2 -> 3.3.5, upgrade R to 
>> 3.6.3, add new dependencies
>> 2fd5c176e0 Trac #29334: r_jupyter script package needs SPKG.rst
>> f94ac663e2 Trac #29506: Backend for Hyperplane Arrangements
>> 0f1e9125cb Trac #30114: add missing colons in padics documentation
>> 9b2e764ec3 Trac #30074: Speedups for symbolic assumptions
>> 9c5b18502d Trac #29777: xgcd for polynomials over padic rings
>> a1c3b4863f Trac #29694: conflict between lazy attribute and abstract 
>> method tester
>> b274faf834 Trac #29194: Three.js-based Animations
>> cc7fa7d3d4 Trac #28959: Upgrade zn_poly to v0.9.2
>> 61f77810d5 Trac #30215: VectorSpaces: Add a parent method dimension
>> 4492d28949 Trac #30204: Prepare Polyhedra parent factory to handle more 
>> general ambient spaces
>> 95d311d3e6 Trac #30195: tox.ini: Add centos-6, docker-nobootstrap, 
>> manylinux-*
>> 7be09f6cb4 Trac #30180: Category Modules should provide a parent method 
>> module_morphism compatible with ModulesWithBasis.module_morphism
>> abd54ac815 Trac #30179: ModulesWithBasis.linear_combination should be a 
>> method of Modules
>> d8b44dd7ab Trac #30170: Make morphisms of metric spaces metric maps
>> 77b837593e Trac #30166: Cartesian products of metric, topological spaces
>> ddee54841f Trac #30162: Make doctests accept Python 3.8.x respellings of 
>> some error messages
>> 37c62d2fc8 Trac #30161: Zero Matrix has Inverse over Finite Field
>> d35315a114 Trac #30157: Cygwin: system sqlite3 modifies DLL search order
>> e561663dd6 Trac #30155: Remove broken experimental package scons
>> a87c4b3c0b Trac #30149: Cygwin: problem with DLL search order when using 
>> system Python
>> f6e88bcc5a Trac #30138: 1 internet doctest failing in oeis.py 
>> (cross_references)
>> 97893277ab Trac #30135: Use /bin/sh where possible for sage-* scripts
>> 3f560fc59f Trac #30134: various fixes suggested by lgtm
>> bbbd7a553a Trac #30132: Copy resolvelinks() function from 
>> ./src/bin/sage-env to ./sage
>> 93d1dfd100 Trac #30107: Fix docstring failures in 
>> designs.balanced_incomplete_block_design with use_LJCR=True
>> feb63c993e Trac #30105: sage.libs.ecl: Make it possible to convert Python 
>> strings to Lisp strings
>> d60d20b45d Trac #30076: remove sagenb developer docs from the developer  
>> manual and tutorials, remove sws stuff
>> 62c07cf458 Trac #29929: tox.ini: Various CI fixes
>> 7dd8ad4736 Trac #29907: Run test suite to check method dilation
>> d01edd95d7 Trac #29313: Upgrade to pari 2.11.4
>> 330f2366d4 Trac #21226: An Abstract Class for Rank Metric Codes
>> b9dfa0ee46 Trac #30146: #29843 introduces a bug in 
>> Polyhedron().linear_transformation
>> 17a83a262e Trac #30153: Repair "sage -b" broken by #29411
>> ddaba54f6d (tag: 9.2.beta6) Updated SageMath version to 9.2.beta6
>>
>>

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[sage-release] Re: Sage 9.2.beta8 released

[Matthias Köppe]

On Monday, August 10, 2020 at 3:51:35 PM UTC-7, Volker Braun wrote:
>
> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html 
>
>
> 415221a9a8 (trac/develop, tag: 9.2.beta8) Updated SageMath version to 
> 9.2.beta8
>

Thanks for preparing the latest beta. 

Tests ran automatically at 
https://github.com/sagemath/sage/actions/runs/203191522 (with only sparse 
results because of current reliability issues of GitHub Actions).

*ubuntu*-trusty-standard - clean
*linuxmint*-17 - Lots of doctest failures due to *"setlocale" warning 
messages* reported previously
*centos*-7-minimal, -standard - clean
*fedora*-32-standard - clean
*gentoo*-minimal, -standard - clean
*slackware*-14.2-standard - clean
*homebrew*-macos-minimal (https://github.com/sagemath/sage/runs/968871522) 
- some *doctest timeouts*
homebrew-macos-python3_xcode-nokegonly-standard (
https://github.com/sagemath/sage/runs/968871676) - *r spkg fails* in 
configure phase "linking to Fortran libraries from C fails"
*conda*-forge-macos-standard (
https://github.com/sagemath/sage/runs/968871892), standard - *sagelib build 
fails *"linbox/algorithms/det-rational.h:95:39: error: no viable overloaded 
'='"

Could someone please fix the errors in "*sagetex*" due to Python 2 syntax?




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Re: [sage-release] Sage 9.2.beta8 released

[Matthias Köppe]

On Tuesday, August 11, 2020 at 3:12:38 PM UTC-7, Kenji Iohara wrote:
>
> I could compile Sage 9.2.beta 8 on Mac OS.10.15.6 and run sage. Quitting 
> sage has evoked no problem…
> But, for ptestlong, it has some errors. I don’t know whether this is 
> completely local porblem…
>

These doctest failures seem to come from locale issues. We have a ticket 
for these already - https://trac.sagemath.org/ticket/30053 - which needs 
help


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Re: [sage-release] Re: Sage 9.2.beta8 released

[Matthias Köppe]

On Tuesday, August 11, 2020 at 9:04:01 AM UTC-7, Emmanuel Charpentier wrote:
>
> I do not know how to re-open a closed ticket...
>

One doesn't. 

I'd suggest to use https://trac.sagemath.org/ticket/25363 (simple-prompt) 
for the things that need to be prepared on the sage side, 
and https://github.com/sagemath/sage-shell-mode/issues/53 for subsequent 
changes in sage-shell-mode.

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Re: [sage-release] Re: Sage 9.2.beta8 released

[Matthias Köppe]

Yes, 9.2.beta8 did the overdue update from ipython 5 to 7 
in https://trac.sagemath.org/ticket/28197

On Tuesday, August 11, 2020 at 8:48:43 AM UTC-7, Dima Pasechnik wrote:
>
> it is probably a newer iPython that gives this, nothing Sage-specific it 
> seems. 
>
> On Tue, Aug 11, 2020 at 4:47 PM Emmanuel Charpentier 
> > wrote: 
> > 
> > I I filed [this issue](
> https://github.com/sagemath/sage-shell-mode/issues/53) against 
> `sage-shell-mode` on Github. 
> > 
> > HTH, 
> > 
> > Le mardi 11 août 2020 17:39:29 UTC+2, Emmanuel Charpentier a écrit : 
> >> 
> >> Damn ! 
> >> 
> >> This release breaks sage-shell-mode support for a sage session into 
> emacs. After starting an emacs session, I get the normal banner and a 
> normal prompt. A little while after that (about 0.5 to 1 second), a warning 
> WARNING: your terminal doesn't support cursor position requests (CPR). 
> appears immediately below the banner and above the prompt, then the cursor 
> goes right to the right margin (i. e. in the right scrollbar). 
> >> 
> >> I still can type Sage code, which appears at the left margin on the 
> line immediately below the prompt. Typing  displays a continuation 
> prompt (.:) 7 spaces,, then my code,which gets executed and the answer 
> printed on tjhe line below the continuation prompt. Example : 
> >> 
> >> ┌┐ 
> >> │ SageMath version 9.2.beta8, Release Date: 2020-08-10   │ 
> >> │ Using Python 3.7.3. Type "help()" for help.│ 
> >> └┘ 
> >> ┏┓ 
> >> ┃ Warning: this is a prerelease version, and it may be unstable. ┃ 
> >> ┗┛ 
> >> WARNING: your terminal doesn't support cursor position requests (CPR). 
> >> sage: sage: 
> >> :   1+1 
> >> 2 
> >> sage: 
> >> 
> >> No error message appears in the terminal window from which I launched 
> emacs ; nothing unusual in the *Messages* buffer either. 
> >> 
> >> I’m stymied… 
> >> 
> >> 
> >> Le mardi 11 août 2020 13:39:38 UTC+2, Emmanuel Charpentier a écrit : 
> >>> 
> >>> On Debian testing running on core i7 + 16 GB RAM, upgrading 9.2.beta7 
> configured for use of all possible system libraries an runningptestlong 
> gets me the same transient an same three permanent failures already 
> reported for 9.2.beta7 and 9.2.beta5 : 
> >>> 
> >>> sage -t --long --warn-long 175.4 --random-seed=0 
> src/sage/tests/parigp.py  # Timed out 
> >>> sage -t --long --warn-long 175.4 --random-seed=0 
> src/sage/rings/complex_arb.pyx  # 6 doctests failed 
> >>> sage -t --long --warn-long 175.4 --random-seed=0 
> src/sage/tests/gap_packages.py  # 1 doctest failed 
> >>> sage -t --long --warn-long 175.4 --random-seed=0 
> src/sage/rings/real_arb.pyx  # 2 doctests failed 
> >>> 
> >>> HTH, 
> >>> 
> >>> 
> >>> 
> >>> Le mardi 11 août 2020 00:51:35 UTC+2, Volker Braun a écrit : 
>  
>  As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html 
>  
>  
>  415221a9a8 (trac/develop, tag: 9.2.beta8) Updated SageMath version to 
> 9.2.beta8 
>  ab502c6901 Trac #30287: sage.tensor.modules.free_module_basis: Add 
> testsuite 
>  f148ee505b Trac #30237: Make .coxeter_matrix() return a CoxeterMatrix 
> for coxeter3-implemented groups 
>  075edbb1f6 Trac #30177: build/bin/sage-system-python: Improve check 
> for a suitable python 
>  2f73418deb Trac #30159: Adding new small graph structures 
>  b78fa7bc86 Trac #30318: Dot and cross products along a differentiable 
> map 
>  8f4e3779f6 Trac #30291: Scalar Field Arithmetics: Trivial Cases 
>  d423d08e7d Trac #30280: Immutability of Affine Connections 
>  e336f00ef3 Trac #30194: Extend FreeModule factory to construction of 
> FiniteRankFreeModule and CombinatorialFreeModule 
>  2c85de4715 Trac #29701: Replace use of module_list and 
> OptionalExtension by extending find_python_sources 
>  d600162861 Trac #29205: character art fails for LieAlgebra elements 
>  05d310c5cf Trac #30314: p-adic nth-root fails for some extensions 
>  315bde2aec Trac #30289: Error in display of a continuous map between 
> open intervals 
>  7190161153 Trac #30288: Immutability for Sections 
>  a9e4141b37 Trac #30285: Affine Connection with Copy 
>  61d70b1f6d Trac #30282: Make symmetrica/spkg-configure.m4 respect 
> quiet mode 
>  81635f190c Trac #30279: Update FAQ 
>  70d7d21bd3 Trac #30274: Immutability of Tensor Fields 
>  35d9d52b25 Trac #30270: Random failure in number_field_ideal_rel.py 
>  7b224d83c0 Trac #30266: Immutability for scalar fields 
>  b679a2d444 Trac #30255: FiniteRankFreeModule: Move all module 
> identifications to 

Re: [sage-release] Re: Sage 9.2.beta8 released

[Matthias Köppe]

The solution in that thread, using "--simple-prompt", is of course not 
support by sage. 
There's already a ticket for that: https://trac.sagemath.org/ticket/25363
which needs work

On Tuesday, August 11, 2020 at 8:47:00 AM UTC-7, Dima Pasechnik wrote:
>
> maybe, 
>
> https://stackoverflow.com/questions/60534394/ipython-warning-in-emacs-your-terminal-doesnt-support-cursor-position-requests
>  
> ? 
>
> On Tue, Aug 11, 2020 at 4:39 PM Emmanuel Charpentier 
> > wrote: 
> > 
> > Damn ! 
> > 
> > This release breaks sage-shell-mode support for a sage session into 
> emacs. After starting an emacs session, I get the normal banner and a 
> normal prompt. A little while after that (about 0.5 to 1 second), a warning 
> WARNING: your terminal doesn't support cursor position requests (CPR). 
> appears immediately below the banner and above the prompt, then the cursor 
> goes right to the right margin (i. e. in the right scrollbar). 
> > 
> > I still can type Sage code, which appears at the left margin on the line 
> immediately below the prompt. Typing  displays a continuation 
> prompt (.:) 7 spaces,, then my code,which gets executed and the answer 
> printed on tjhe line below the continuation prompt. Example : 
> > 
> > ┌┐ 
> > │ SageMath version 9.2.beta8, Release Date: 2020-08-10   │ 
> > │ Using Python 3.7.3. Type "help()" for help.│ 
> > └┘ 
> > ┏┓ 
> > ┃ Warning: this is a prerelease version, and it may be unstable. ┃ 
> > ┗┛ 
> > WARNING: your terminal doesn't support cursor position requests (CPR). 
> > sage: sage: 
> > :   1+1 
> > 2 
> > sage: 
> > 
> > No error message appears in the terminal window from which I launched 
> emacs ; nothing unusual in the *Messages* buffer either. 
> > 
> > I’m stymied… 
> > 
> > 
> > Le mardi 11 août 2020 13:39:38 UTC+2, Emmanuel Charpentier a écrit : 
> >> 
> >> On Debian testing running on core i7 + 16 GB RAM, upgrading 9.2.beta7 
> configured for use of all possible system libraries an runningptestlong 
> gets me the same transient an same three permanent failures already 
> reported for 9.2.beta7 and 9.2.beta5 : 
> >> 
> >> sage -t --long --warn-long 175.4 --random-seed=0 
> src/sage/tests/parigp.py  # Timed out 
> >> sage -t --long --warn-long 175.4 --random-seed=0 
> src/sage/rings/complex_arb.pyx  # 6 doctests failed 
> >> sage -t --long --warn-long 175.4 --random-seed=0 
> src/sage/tests/gap_packages.py  # 1 doctest failed 
> >> sage -t --long --warn-long 175.4 --random-seed=0 
> src/sage/rings/real_arb.pyx  # 2 doctests failed 
> >> 
> >> HTH, 
> >> 
> >> 
> >> 
> >> Le mardi 11 août 2020 00:51:35 UTC+2, Volker Braun a écrit : 
> >>> 
> >>> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html 
> >>> 
> >>> 
> >>> 415221a9a8 (trac/develop, tag: 9.2.beta8) Updated SageMath version to 
> 9.2.beta8 
> >>> ab502c6901 Trac #30287: sage.tensor.modules.free_module_basis: Add 
> testsuite 
> >>> f148ee505b Trac #30237: Make .coxeter_matrix() return a CoxeterMatrix 
> for coxeter3-implemented groups 
> >>> 075edbb1f6 Trac #30177: build/bin/sage-system-python: Improve check 
> for a suitable python 
> >>> 2f73418deb Trac #30159: Adding new small graph structures 
> >>> b78fa7bc86 Trac #30318: Dot and cross products along a differentiable 
> map 
> >>> 8f4e3779f6 Trac #30291: Scalar Field Arithmetics: Trivial Cases 
> >>> d423d08e7d Trac #30280: Immutability of Affine Connections 
> >>> e336f00ef3 Trac #30194: Extend FreeModule factory to construction of 
> FiniteRankFreeModule and CombinatorialFreeModule 
> >>> 2c85de4715 Trac #29701: Replace use of module_list and 
> OptionalExtension by extending find_python_sources 
> >>> d600162861 Trac #29205: character art fails for LieAlgebra elements 
> >>> 05d310c5cf Trac #30314: p-adic nth-root fails for some extensions 
> >>> 315bde2aec Trac #30289: Error in display of a continuous map between 
> open intervals 
> >>> 7190161153 Trac #30288: Immutability for Sections 
> >>> a9e4141b37 Trac #30285: Affine Connection with Copy 
> >>> 61d70b1f6d Trac #30282: Make symmetrica/spkg-configure.m4 respect 
> quiet mode 
> >>> 81635f190c Trac #30279: Update FAQ 
> >>> 70d7d21bd3 Trac #30274: Immutability of Tensor Fields 
> >>> 35d9d52b25 Trac #30270: Random failure in number_field_ideal_rel.py 
> >>> 7b224d83c0 Trac #30266: Immutability for scalar fields 
> >>> b679a2d444 Trac #30255: FiniteRankFreeModule: Move all module 
> identifications to methods exterior_power, dual_exterior_power, 
> tensor_module 
> >>> dfdae6fa93 Trac #30176: Update matplotlib to 3.3 
> >>> ed79ba3a3f Trac #30248: 

Re: [sage-release] Sage 9.2.beta6 released

[Matthias Köppe]

On Wednesday, July 29, 2020 at 4:37:52 AM UTC-7, Samuel Lelievre wrote:
>
> The errors seem to involve Flint. I have Flint 2.6.1 from Homebrew.
>
> Should I
> - uninstall Homebrew's flint and try again?
>
>
Yes please, so that we can get https://trac.sagemath.org/ticket/30227 done


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Re: [sage-release] Sage 9.2.beta6 released

[Matthias Köppe]

Please post logs

On Monday, July 27, 2020 at 4:06:19 PM UTC-7, Kenji Iohara wrote:
>
> On mac OS X.15.6 without gcc@9, I could ompile it.
> Installing gcc@9 with Homebrew, I couldn’t compile arb….
>
> After compilation without gcc@9,  making ptestlong, I had the next 
> reaction:
>
> --
> sage -t --long --warn-long 125.6 --random-seed=0 
> src/sage/misc/sageinspect.py  # 1 doctest failed
> sage -t --long --warn-long 125.6 --random-seed=0 
> src/sage/interfaces/interface.py  # 1 doctest failed
> sage -t --long --warn-long 125.6 --random-seed=0 
> src/sage/repl/ipython_tests.py  # 1 doctest failed
> sage -t --long --warn-long 125.6 --random-seed=0 src/sage/interfaces/r.py  
> # 1 doctest failed
> sage -t --long --warn-long 125.6 --random-seed=0 
> src/doc/en/prep/Quickstarts/Statistics-and-Distributions.rst  # 1 doctest 
> failed
> sage -t --long --warn-long 125.6 --random-seed=0 src/sage/stats/r.py  # 1 
> doctest failed
> --
> Total time for all tests: 6861.9 seconds
> cpu time: 19657.6 seconds
> cumulative wall time: 26835.7 seconds
> make: *** [ptestlong] Error 1
>
>
> 2020/07/27 7:16、Thierry Dumont 
> >のメール:
>
> On my Unbuntu 20-0:
>
> * transition from 9.2 beta 5 to beta -: no problem
> * make ptestlong : all tests passed !
>
> t.d.
>
> -- 
> You received this message because you are subscribed to the Google Groups 
> "sage-release" group.
> To unsubscribe from this group and stop receiving emails from it, send an 
> email to sage-r...@googlegroups.com .
> To view this discussion on the web visit 
> https://groups.google.com/d/msgid/sage-release/e7409b42-0981-5be9-2ed7-8566622e030c%40math.univ-lyon1.fr
> .
> 
>
>
>

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Re: [sage-release] Sage 9.2.beta6 released

[Matthias Köppe]

Fixed in #30227, please test

On Sunday, July 26, 2020 at 12:34:30 PM UTC-7, Samuel Lelievre wrote:
>
> > Date: 2020-07-26 00:20 UTC 
> > From: Volker Braun 
> > To: sage-release 
> > Subject: Sage 9.2.beta6 released 
> > 
> > As always, you can get the latest beta version from the "develop" 
> > git branch. Alternatively, the self-contained source tarball is at 
> > http://www.sagemath.org/download-latest.html 
>
> Thanks for this new beta release! 
>
> Failed on sagelib on macOS 10.14.6 Mojave with Homebrew. 
>
> Logs for this attempt to build: 
>
> https://www.math.u-psud.fr/~lelievre/sagelogs/ 
> slel-build-sage-9-2-b6-macos-brew-2020-07-26-fail.zip 
> 
>  
>

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Re: [sage-release] Sage 9.2.beta6 released

[Matthias Köppe]

This will be addressed in https://trac.sagemath.org/ticket/30227

On Sunday, July 26, 2020 at 1:46:10 PM UTC-7, Matthias Köppe wrote:
>
> From your log:
> [  4/517] clang -Wno-unused-result -Wsign-compare -Wunreachable-code 
> -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot 
> /Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk 
> -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/usr/include 
> -I/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers
>  
> -I./sage/cpython -I/opt/s/sage92b6/src -I/opt/s/sage92b6/src/sage/ext 
> -I/usr/local/Cellar/python@3.7/3.7.8_1/Frameworks/Python.framework/Versions/3.7/include/python3.7m
>  
> -I/opt/s/sage92b6/local/lib/python3.7/site-packages/numpy/core/include 
> -Ibuild/cythonized -I/usr/local/include 
> -I/usr/local/opt/openssl@1.1/include -I/usr/local/opt/sqlite/include 
> -I/opt/s/sage92b6/local/include 
> -I/usr/local/Cellar/python@3.7/3.7.8_1/Frameworks/Python.framework/Versions/3.7/include/python3.7m
>  
> -c build/cythonized/sage/algebras/letterplace/letterplace_ideal.cpp -o 
> build/temp.macosx-10.14-x86_64-3.7/build/cythonized/sage/algebras/letterplace/letterplace_ideal.o
>  
> -fno-strict-aliasing -DCYTHON_CLINE_IN_TRACEBACK=1 -DSING_NDEBUG 
> -DOM_NDEBUG -I/opt/s/sage92b6/local/include/singular 
> -I/opt/s/sage92b6/local/include/ -std=c++11
> In file included from 
> build/cythonized/sage/algebras/letterplace/letterplace_ideal.cpp:675:
> /usr/local/include/singular/Singular/libsingular.h:15:10: fatal error: 
> 'polys/shiftop.h' file not found
> #include "polys/shiftop.h"
>  ^
> In file included from 
> build/cythonized/sage/algebras/letterplace/free_algebra_letterplace.cpp:675:
> /usr/local/include/singular/Singular/libsingular.h:15:10: fatal error: 
> 'polys/shiftop.h' file not found
> #include "polys/shiftop.h"
>  ^
> In file included from 
> build/cythonized/sage/algebras/letterplace/free_algebra_element_letterplace.cpp:675:
> /usr/local/include/singular/Singular/libsingular.h:15:10: fatal error: 
> 'polys/shiftop.h' file not found
> #include "polys/shiftop.h"
>  ^
> build/cythonized/sage/algebras/finite_dimensional_algebras/finite_dimensional_algebra_element.c:11104:18:
>  
> warning: unused function '__pyx_pw_4sage_9structure_7element_1parent' 
> [-Wunused-function]
> static PyObject *__pyx_pw_4sage_9structure_7element_1parent(PyObject 
> *__pyx_self, PyObject *__pyx_v_x) {
>  ^
>
> This appears to be a conflict with a version of Singular that is installed 
> in /usr/local
>
>
> On Sunday, July 26, 2020 at 12:34:30 PM UTC-7, Samuel Lelievre wrote:
>>
>> > Date: 2020-07-26 00:20 UTC 
>> > From: Volker Braun 
>> > To: sage-release 
>> > Subject: Sage 9.2.beta6 released 
>> > 
>> > As always, you can get the latest beta version from the "develop" 
>> > git branch. Alternatively, the self-contained source tarball is at 
>> > http://www.sagemath.org/download-latest.html 
>>
>> Thanks for this new beta release! 
>>
>> Failed on sagelib on macOS 10.14.6 Mojave with Homebrew. 
>>
>> Logs for this attempt to build: 
>>
>> https://www.math.u-psud.fr/~lelievre/sagelogs/ 
>> slel-build-sage-9-2-b6-macos-brew-2020-07-26-fail.zip 
>> <https://www.math.u-psud.fr/~lelievre/sagelogs/slel-build-sage-9-2-b6-macos-brew-2020-07-26-fail.zip>
>>  
>>
>

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Re: [sage-release] Sage 9.2.beta6 released

[Matthias Köppe]

>From your log:
[  4/517] clang -Wno-unused-result -Wsign-compare -Wunreachable-code 
-fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot 
/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk 
-I/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/usr/include 
-I/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers
 
-I./sage/cpython -I/opt/s/sage92b6/src -I/opt/s/sage92b6/src/sage/ext 
-I/usr/local/Cellar/python@3.7/3.7.8_1/Frameworks/Python.framework/Versions/3.7/include/python3.7m
 
-I/opt/s/sage92b6/local/lib/python3.7/site-packages/numpy/core/include 
-Ibuild/cythonized -I/usr/local/include 
-I/usr/local/opt/openssl@1.1/include -I/usr/local/opt/sqlite/include 
-I/opt/s/sage92b6/local/include 
-I/usr/local/Cellar/python@3.7/3.7.8_1/Frameworks/Python.framework/Versions/3.7/include/python3.7m
 
-c build/cythonized/sage/algebras/letterplace/letterplace_ideal.cpp -o 
build/temp.macosx-10.14-x86_64-3.7/build/cythonized/sage/algebras/letterplace/letterplace_ideal.o
 
-fno-strict-aliasing -DCYTHON_CLINE_IN_TRACEBACK=1 -DSING_NDEBUG 
-DOM_NDEBUG -I/opt/s/sage92b6/local/include/singular 
-I/opt/s/sage92b6/local/include/ -std=c++11
In file included from 
build/cythonized/sage/algebras/letterplace/letterplace_ideal.cpp:675:
/usr/local/include/singular/Singular/libsingular.h:15:10: fatal error: 
'polys/shiftop.h' file not found
#include "polys/shiftop.h"
 ^
In file included from 
build/cythonized/sage/algebras/letterplace/free_algebra_letterplace.cpp:675:
/usr/local/include/singular/Singular/libsingular.h:15:10: fatal error: 
'polys/shiftop.h' file not found
#include "polys/shiftop.h"
 ^
In file included from 
build/cythonized/sage/algebras/letterplace/free_algebra_element_letterplace.cpp:675:
/usr/local/include/singular/Singular/libsingular.h:15:10: fatal error: 
'polys/shiftop.h' file not found
#include "polys/shiftop.h"
 ^
build/cythonized/sage/algebras/finite_dimensional_algebras/finite_dimensional_algebra_element.c:11104:18:
 
warning: unused function '__pyx_pw_4sage_9structure_7element_1parent' 
[-Wunused-function]
static PyObject *__pyx_pw_4sage_9structure_7element_1parent(PyObject 
*__pyx_self, PyObject *__pyx_v_x) {
 ^

This appears to be a conflict with a version of Singular that is installed 
in /usr/local


On Sunday, July 26, 2020 at 12:34:30 PM UTC-7, Samuel Lelievre wrote:
>
> > Date: 2020-07-26 00:20 UTC 
> > From: Volker Braun 
> > To: sage-release 
> > Subject: Sage 9.2.beta6 released 
> > 
> > As always, you can get the latest beta version from the "develop" 
> > git branch. Alternatively, the self-contained source tarball is at 
> > http://www.sagemath.org/download-latest.html 
>
> Thanks for this new beta release! 
>
> Failed on sagelib on macOS 10.14.6 Mojave with Homebrew. 
>
> Logs for this attempt to build: 
>
> https://www.math.u-psud.fr/~lelievre/sagelogs/ 
> slel-build-sage-9-2-b6-macos-brew-2020-07-26-fail.zip 
> 
>  
>

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Re: [sage-release] Sage 9.3.beta4 released

[Matthias Köppe]

Sage does not support gcc/gfortran 10 yet. 
See https://trac.sagemath.org/ticket/30067 for a workaround
and https://trac.sagemath.org/ticket/29456 for the task of adding support 
for 10.

On Sunday, July 12, 2020 at 6:26:37 AM UTC-7, Kenji Iohara wrote:
>
> The version of gfortran I use is 10.1.0. Via Homebrew, it seems impossible 
> to install only gfortran (i.e., without gcc).
>
> 2020/07/12 11:52、Dima Pasechnik >のメール:
>
>gfortran:f77: scipy/sparse/linalg/eigen/arpack/ARPACK/UTIL/icopy.f
>error: Command "gfortran -Wall -g -ffixed-form
> -fno-second-underscore -fPIC -O3 -funroll-loops
> -Iscipy/sparse/linalg/eigen/arpack/ARPACK/SRC
>
> -I/Users/iohara/Desktop/sage-9.2.beta4/local/lib/python3.7/site-packages/numpy/core/include
> -c -c scipy/sparse/linalg/eigen/arpack/ARPACK/SRC/dsaitr.f -o
>
> build/temp.macosx-10.14-x86_64-3.7/scipy/sparse/linalg/eigen/arpack/ARPACK/SRC/dsaitr.o"
> failed with exit status 1
>
> what is the version of gfortran you use?
>
> It is by any chance gfortran-10 (from Homebrew) ?
> (unfortunately scipy log does not say)
> In this case please uninstall package gcc and install package gfortran
> https://formulae.brew.sh/cask/gfortran#default
>
> On Sun, Jul 12, 2020 at 8:22 AM Kenji Iohara  > wrote:
>
>
> I couldn’t compile it; it stops at scipy-1.2.3.  I am using Mac OS X.15.5 
> with Intel Core i5,
> and the log-file is attached to this email.
>
> --
> You received this message because you are subscribed to the Google Groups 
> "sage-release" group.
> To unsubscribe from this group and stop receiving emails from it, send an 
> email to sage-r...@googlegroups.com .
> To view this discussion on the web visit 
> https://groups.google.com/d/msgid/sage-release/AE72646B-A62E-433A-9BC4-DB7ADC4336A4%40gmail.com
> .
>
>
> 2020/07/11 16:31、Dima Pasechnik >のメール:
>
> perhaps we should update notebook to 5.7.10 ?
>
> On Sat, 11 Jul 2020, 15:10 'Jonathan Kliem' via sage-release, <
> sage-r...@googlegroups.com > wrote:
>
>
> Ok, I think it has nothing to do with #30030.
>
> Running
>
> make build
>
> leads to the blank screen for the notebook (also with "./configure" 
> before).
>
> Running
>
> sage -b
>
> fixes it (but only until you run `make build` again).
>
> Am Samstag, 11. Juli 2020 15:35:56 UTC+2 schrieb Dima Pasechnik:
>
>
> I can confirm that it does break things for me too (and reverting fixes)
> on Linux/Firefox.
>
> But if I re-revert back, everything works. So this is some kind  of
> caching issue, I gather.
>
> On Sat, Jul 11, 2020 at 1:40 PM 'Jonathan Kliem' via sage-release
>  wrote:
>
>
> https://trac.sagemath.org/ticket/30030 broke the jupyter notebook for me.
>
> Please wait while the Sage Jupyter Notebook server starts...
> [I 14:23:35.535 NotebookApp] Using MathJax: nbextensions/mathjax/MathJax.js
> [I 14:23:35.655 NotebookApp] Serving notebooks from local directory: 
> /home/mi/kliem
> [I 14:23:35.655 NotebookApp] The Jupyter Notebook is running at:
> [I 14:23:35.655 NotebookApp] 
> http://localhost:/?token=13410c6dbd032a2e31784207d69dcb1bbf54374b475a6449
> [I 14:23:35.656 NotebookApp] Use Control-C to stop this server and shut 
> down all kernels (twice to skip confirmation).
> [C 14:23:35.658 NotebookApp]
>
>To access the notebook, open this file in a browser:
>file:///run/user/284784/jupyter/nbserver-12512-open.html
>Or copy and paste one of these URLs:
>
> http://localhost:/?token=13410c6dbd032a2e31784207d69dcb1bbf54374b475a6449
> [I 14:23:47.500 NotebookApp] 302 GET 
> /?token=13410c6dbd032a2e31784207d69dcb1bbf54374b475a6449 (127.0.0.1) 0.33ms
> [I 14:23:55.390 NotebookApp] Creating new notebook in
> [W 14:23:55.908 NotebookApp] 404 GET 
> /nbextensions/mathjax/MathJax.js?config=TeX-AMS-MML_HTMLorMML-full,Safe=configured
>  
> (127.0.0.1) 5.67ms referer=
> http://localhost:/notebooks/Untitled2.ipynb?kernel_name=sagemath
> [W 14:24:54.535 NotebookApp] 404 GET 
> /nbextensions/mathjax/MathJax.js?config=TeX-AMS-MML_HTMLorMML-full,Safe=configured
>  
> (127.0.0.1) 1.72ms referer=
> http://localhost:/notebooks/Dokumente/SageDays109/CombinatorialPolyhedron.ipynb
>
> All I'm seeing is something like this. I can navigate the folders, but 
> when I open a file I just see a blank page in the browser.
>
> It worked just fine on debian buster and ubuntu bionic. Reverting the 
> commit it works fine again. I'm using firefox, but I cannot get it to work 
> on chromium either.
>
> Am Donnerstag, 9. Juli 2020 00:50:33 UTC+2 schrieb Volker Braun:
>
>
> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html
>
> 02b0be1ff8 Updated SageMath version to 9.2.beta4
> 3e65aa67cc Trac #29878: Remove `sage -twistd` from `src/bin/sage`
>
> a3308ffb43 Trac #29862: Installation guide: change python version in conda 
> instructions
> a6215602a5 Trac #29828: Broken conversion from ZZ['x'] to Qp['y']
> 5d2577a0ce Trac #29746: 

[sage-release] Re: Sage 9.2.beta2 released

[Matthias Köppe]

On Friday, June 26, 2020 at 2:36:15 PM UTC-7, Paul Masson wrote:
>
> Any reason Trac 29809 wasn't included in this release? It's blocking other 
> tickets and future improvements.
>

My guess is there is no particular reason other than a backlog of other 
positive-review tickets. 
https://trac.sagemath.org/query?milestone=sage-9.2=1=status=1500=id=summary=component=time=changetime=author=reviewer=keywords=1=changetime


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[sage-release] Re: Sage 9.2.beta1 released

[Matthias Köppe]

A possibly related ticket: https://trac.sagemath.org/ticket/28008

On Wednesday, June 17, 2020 at 9:41:43 AM UTC-7, kcrisman wrote:
>
> On Mac OS X 10.11.  Upgrading via git pull trac develop and make from 
> somewhere in the 9.0 betas, I get a lot of good things, until:
>
> mkdir ../../../../library/tools/libs
>
> installing 'sysdata.rda'
>
> dyld: Library not loaded: 
> /Users/.../sage/local/lib/libopenblas_haswellp-r0.3.6.dylib
>
>   Referenced from: /Users/.../sage/local/lib/R/lib/libR.dylib
>
>   Reason: image not found
>
> /bin/bash: line 1: 24759 Doneecho 
> "tools:::sysdata2LazyLoadDB(\"./R/sysdata.rda\",\"../../../library/tools/R\")"
>
>  24760 Trace/BPT trap: 5   | R_DEFAULT_PACKAGES=NULL LC_ALL=C 
> R_ENABLE_JIT=0 TZ=UTC ../../../bin/R --vanilla --slave
>
> make[8]: *** [sysdata] Error 133
>
> make[7]: *** [all] Error 2
>
> make[6]: *** [R] Error 1
>
> make[5]: *** [R] Error 1
>
> make[4]: *** [R] Error 1
>
>
> 
>
> Error building r-3.6.2.p0
>
>
> 
>
>
> real2m5.131s
>
> user0m47.882s
>
> sys 0m46.001s
>
> 
>
> Error installing package r-3.6.2.p0
>
> 
>
>
> $ ls local/lib/libopenblas[tab]
>
> libopenblas.0.dyliblibopenblas.dylib  
> libopenblas_haswellp-r0.3.9.dylib  
>
>
> So I'm not sure why it's asking for an older version of libopenblas.  Full 
> R log at http://www.math.gordon.edu/~kcrisman/r-3.6.2.p0.log
>

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Re: [sage-release] Sage 9.1 released

[Matthias Köppe]

On Monday, May 25, 2020 at 4:20:45 AM UTC-7, Harald Schilly wrote:
>
> Hi, can you please try again?
>

Seems to be fixed, thanks!
 

>
> I made notes here: https://github.com/sagemath/website/issues/194
>
> This has nothing to do with files.sagemath.org, because this list is 
> served directly from sagemath.org.
>

OK, thanks for the correction.
 

>
> Besides that, could we change that url to be https:// ?
>
>
That comes with its own complexities. I have created ticket 
https://trac.sagemath.org/ticket/29735 for this and for making the Sage 
mirror stuff more robust.

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Re: [sage-release] Sage 9.1 released

[Matthias Köppe]

On Sunday, May 24, 2020 at 10:57:44 PM UTC-7, Matthias Köppe wrote:
>
> I believe this is not due to changes in Sage but is caused by a server 
> misconfiguration on files.sagemath.org. 
>
>
With python2 on macOS:

>>> from sage_bootstrap.compat import urllib, urlparse

>>> f = urllib.urlopen('http://www.sagemath.org/mirror_list', data=None)

>>> str(f.info())

'Date: Mon, 25 May 2020 05:51:22 GMT\r\nContent-Type: text/plain; 
charset=UTF-8\r\nContent-Length: 16\r\nConnection: 
close\r\nX-Frame-Options: SAMEORIGIN\r\nCache-Control: private, max-age=0, 
no-store, no-cache, must-revalidate, post-check=0, pre-check=0\r\nExpires: 
Thu, 01 Jan 1970 00:00:01 GMT\r\nSet-Cookie: 
__cfduid=d963869c5cafb922acb708178f83381b61590385882; expires=Wed, 
24-Jun-20 05:51:22 GMT; path=/; domain=.sagemath.org; HttpOnly; 
SameSite=Lax; Secure\r\nServer: cloudflare\r\nCF-RAY: 
598cfbf71f320fc7-SJC\r\ncf-request-id: 02ebfbce700fc7dd3f320001\r\n'

>>> f.read()

'error code: 1010'


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Re: [sage-release] Sage 9.1 released

[Matthias Köppe]

I believe this is not due to changes in Sage but is caused by a server 
misconfiguration on files.sagemath.org. 

Matthias

On Friday, May 22, 2020 at 6:54:01 PM UTC-7, kcrisman wrote:
>
>
>
>> Justin 
>>
>> $ make -j6 build/make/Makefile --stop 
>> ./bootstrap -d 
>> rm -rf config configure build/make/Makefile-auto.in 
>> rm -f src/doc/en/installation/*.txt 
>> src/doc/bootstrap:48: installing src/doc/en/installation/arch.txt and 
>> src/doc/en/installation/arch-optional.txt 
>> src/doc/bootstrap:48: installing src/doc/en/installation/debian.txt and 
>> src/doc/en/installation/debian-optional.txt 
>> src/doc/bootstrap:48: installing src/doc/en/installation/fedora.txt and 
>> src/doc/en/installation/fedora-optional.txt 
>> src/doc/bootstrap:48: installing src/doc/en/installation/cygwin.txt and 
>> src/doc/en/installation/cygwin-optional.txt 
>> src/doc/bootstrap:48: installing src/doc/en/installation/homebrew.txt and 
>> src/doc/en/installation/homebrew-optional.txt 
>> gettext and the gettextize program must be installed and be in 
>> your PATH. E.g. Homebrew installs them in /usr/local/opt/gettext/bin. 
>> Bootstrap failed, downloading required files instead. 
>> Attempting to download package 
>> configure-765c5cb3e24dd134708eca97e4c52e0221cd94ba.tar.gz from mirrors 
>> Downloading the Sage mirror list 
>> CRITICAL [mirror_list|_load:91]: Downloaded mirror list has syntax error: 
>> error code: 1010 
>> Searching fastest mirror 
>> ERROR [mirror_list|_rank_mirrors:145]: Could not reach any mirror 
>> directly and no proxy set 
>
>
> I just got exactly the same error, from within binary-pkg.  Same issue 
> that I definitely had internet because binary-pkg just got everything from 
> the git repo before this happened.   Did anyone find a fix or even 
> diagnosis?
>

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[sage-release] Re: Sage 9.1 released

[Matthias Köppe]

On Saturday, May 23, 2020 at 1:39:25 PM UTC-7, Paul Masson wrote:
>
> Tried building an upgraded branch on macOS 10.15.4 (Catalina). Sage won't 
> start with an error I've not seen before. Log attached.
>
> FYI this was a rather long build process. How many packages were updated? 
>
Should I just do a distclean and rebuild?
>

Yes, that would certainly fix this error.
 

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Re: [sage-release] Sage 9.1 released

[Matthias Köppe]

build/sage_bootstrap/download/mirror_list.py already uses a py2/py3 
compatibility module for urllib:
see build/sage_bootstrap/compat/__init__.py

On Saturday, May 23, 2020 at 4:58:22 PM UTC-7, kcrisman wrote:
>
>
>
> On Saturday, May 23, 2020 at 2:44:04 PM UTC-4, Matthias Köppe wrote:
>>
>> For debugging this, please note that this is executed using 
>> build/bin/sage-system-python, which is not necessarily the same as ./sage 
>> -python.
>>
>>>
>>>
>
> Interesting.  In which case my system Python is always py2.  Here is 
> another data point, from a Python 3 build (hopefully zooming to mirrors 
> soon).  urllib doesn't like 
>
> $ ./build/bin/sage-system-python 
>
> Python 2.7.10 (default, Oct 23 2015, 19:19:21) 
>
> [GCC 4.2.1 Compatible Apple LLVM 7.0.0 (clang-700.0.59.5)] on darwin
>
> Type "help", "copyright", "credits" or "license" for more information.
>
> >>> import urllib
>
> >>> eval(urllib.urlopen('http://www.sagemath.org/mirror_list').read())
>
> Traceback (most recent call last):
>
>   File "", line 1, in 
>
>   File "", line 1
>
> error code: 1010
>
>  ^
>
> SyntaxError: invalid syntax
>
> >>> urllib.urlopen('http://www.sagemath.org/mirror_list').read()
>
> 'error code: 1010'
>
> $ ./sage -python
>
> Python 3.7.3 (default, May 23 2020, 09:48:14) 
>
> [Clang 7.3.0 (clang-703.0.31)] on darwin
>
> Type "help", "copyright", "credits" or "license" for more information.
>
> >>> import urllib
>
> >>> eval(urllib.urlopen('http://www.sagemath.org/mirror_list').read())
>
> Traceback (most recent call last):
>
>   File "", line 1, in 
>
> AttributeError: module 'urllib' has no attribute 'urlopen'
>
> >>> urllib.urlopen('http://www.sagemath.org/mirror_list').read()
>
> Traceback (most recent call last):
>
>   File "", line 1, in 
> AttributeError: module 'urllib' has no attribute 'url open' 
>
>
> From https://docs.python.org/3/library/urllib.request.html: The legacy 
> urllib.urlopen function from Python 2.6 and earlier has been 
> discontinued; urllib.request.urlopen() 
> <https://docs.python.org/3/library/urllib.request.html#urllib.request.urlopen>
>  corresponds 
> to the old urllib2.urlopen.
>
> Note that 
> https://github.com/sagemath/sage/blob/4427340fcd58c915e9b803cb5fbc8e720a8c335c/build/sage_bootstrap/download/mirror_list.py#L179
>  
> still has one instance of this function while 
> https://github.com/sagemath/website/blob/785f16e785721e51e1c222bbb2e17d5dcc54cb07/scripts/mirror_manager.py#L456
>  
> has some references to this which is presumably where I got it from.
>
> But in any case that is the error.  Conceivably relevant: 
> * https://twitter.com/scottmmjackson/status/1215639072464613377
> I tried to trace it further but I just don't have time to do so, as it 
> really starts to require messing with the entire mirror list module and I 
> mainly just wanted to build binaries.  But I think these things should be 
> looked into, especially the implied (if not actual) use of urllib.urlopen.
>

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Re: [sage-release] Sage 9.1 released

[Matthias Köppe]

For debugging this, please note that this is executed using 
build/bin/sage-system-python, which is not necessarily the same as ./sage 
-python.

On Saturday, May 23, 2020 at 9:44:53 AM UTC-7, kcrisman wrote:
>
>
> >  CRITICAL [mirror_list|_load:91]: Downloaded mirror list has syntax 
>> error: error code: 1010 
>> > 
>> > 
>> https://github.com/sagemath/sage/blob/develop/build/sage_bootstrap/download/mirror_list.py#L91
>>  
>> Hi, 
>>
>> could you debug this? What's the value of mirror_list just before 
>>
>> https://github.com/sagemath/sage/blob/4427340fcd58c915e9b803cb5fbc8e720a8c335c/build/sage_bootstrap/download/mirror_list.py#L89
>>  
>>
>> Dima 
>>
>
> As the error above indicates, I got "error code: 1010" and I was able to 
> confirm this via a print statement in a different Sage build by doing sage 
> -i bliss after removing the mirror list.  Replacing the mirror list and 
> bliss installed fine.
>
> I can confirm this another way using the syntax provided in the actual 
> file in comments.  Could this be a Python 2 v 3 issue?  I don't really 
> understand why it would return this error code.
>
> $ ./sage -python
>
> Python 2.7.15 (default, May 21 2020, 11:09:06) 
>
> [GCC 4.2.1 Compatible Apple LLVM 7.3.0 (clang-703.0.31)] on darwin
>
> Type "help", "copyright", "credits" or "license" for more information.
>
> >>> import urllib
>
> >>> eval(urllib.urlopen('http://www.sagemath.org/mirror_list').read())
>
> Traceback (most recent call last):
>
>   File "", line 1, in 
>
>   File "", line 1
>
> error code: 1010
>
>  ^
>
> SyntaxError: invalid syntax
>
> >>> urllib.urlopen('http://www.sagemath.org/mirror_list').read()
>
> 'error code: 1010'
>  
>

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Re: [sage-release] Sage 9.1 released

[Matthias Köppe]

On Friday, May 22, 2020 at 6:54:01 PM UTC-7, kcrisman wrote:
>
>
>
>> Justin 
>>
>> $ make -j6 build/make/Makefile --stop 
>> ./bootstrap -d 
>> rm -rf config configure build/make/Makefile-auto.in 
>> rm -f src/doc/en/installation/*.txt 
>> src/doc/bootstrap:48: installing src/doc/en/installation/arch.txt and 
>> src/doc/en/installation/arch-optional.txt 
>> src/doc/bootstrap:48: installing src/doc/en/installation/debian.txt and 
>> src/doc/en/installation/debian-optional.txt 
>> src/doc/bootstrap:48: installing src/doc/en/installation/fedora.txt and 
>> src/doc/en/installation/fedora-optional.txt 
>> src/doc/bootstrap:48: installing src/doc/en/installation/cygwin.txt and 
>> src/doc/en/installation/cygwin-optional.txt 
>> src/doc/bootstrap:48: installing src/doc/en/installation/homebrew.txt and 
>> src/doc/en/installation/homebrew-optional.txt 
>> gettext and the gettextize program must be installed and be in 
>> your PATH. E.g. Homebrew installs them in /usr/local/opt/gettext/bin. 
>> Bootstrap failed, downloading required files instead. 
>> Attempting to download package 
>> configure-765c5cb3e24dd134708eca97e4c52e0221cd94ba.tar.gz from mirrors 
>> Downloading the Sage mirror list 
>> CRITICAL [mirror_list|_load:91]: Downloaded mirror list has syntax error: 
>> error code: 1010 
>> Searching fastest mirror 
>> ERROR [mirror_list|_rank_mirrors:145]: Could not reach any mirror 
>> directly and no proxy set 
>
>
> I just got exactly the same error, from within binary-pkg.  Same issue 
> that I definitely had internet because binary-pkg just got everything from 
> the git repo before this happened.   Did anyone find a fix or even 
> diagnosis?
>


I don't know what's going on with the mirror list, but you can avoid this 
particular download by installing autotools (see build/pkgs/*-bootstrap.txt 
for the details).

 

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Re: [sage-release] Re: Sage 9.1 released

[Matthias Köppe]

Try with the instructions displayed at the end of the ./configure run:

source /Applications/sage-9.1/.homebrew-build-env


after that, run configure and make again.


On Friday, May 22, 2020 at 9:33:43 AM UTC-7, Kenji Iohara wrote:
>
> Here is the config.log
>
> 2020年5月22日金曜日 17時37分09秒 UTC+2 Matthias Köppe:
>>
>> Could you also send the top-level config.log?
>>
>> On Friday, May 22, 2020 at 4:17:29 AM UTC-7, Dima Pasechnik wrote:
>>>
>>> [pynac-0.7.26.sage-2020-04-03] Please email sage-devel (
>>> http://groups.google.com/group/sage-devel)
>>>
>>> [pynac-0.7.26.sage-2020-04-03] explaining the problem and including the 
>>> log file
>>>
>>> [pynac-0.7.26.sage-2020-04-03]   
>>> /Applications/sage-9.1/logs/pkgs/pynac-0.7.26.sage-2020-04-03.log
>>>
>>> [pynac-0.7.26.sage-2020-04-03] Describe your computer, operating system, 
>>> etc.
>>>
>>> we need more details, in particular the log file mentioned.
>>>
>>> Please also describe your environment in more detail - do you use 
>>> Homebrew, Conda?
>>>
>>>
>>>
>>> On Fri, 22 May 2020, 12:09 Kenji Iohara,  wrote:
>>>
>>>> Under Mac OS 10.15.4 I cannot compile sage-9.1. Can anyone help me 
>>>> compiling this ?
>>>> Thanks in advance.
>>>>
>>>>
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] In file included from add.cpp:23:
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] In file included from ./add.h:26:
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] In file included from ./expairseq.h:27:
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] In file included from ./expair.h:27:
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] ./numeric.h:53:10: fatal error: 'gmp.h' 
>>>> file not found
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] #include 
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03]  ^~~
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] 1 error generated.
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] make[6]: *** [libpynac_la-add.lo] Error 1
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] make[5]: *** [all-recursive] Error 1
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] make[4]: *** [all] Error 2
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] 
>>>> 
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] Error building 
>>>> pynac-0.7.26.sage-2020-04-03
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] 
>>>> 
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] 
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] real 0m14.577s
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] user 0m7.225s
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] sys 0m4.471s
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] 
>>>> 
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] Error installing package 
>>>> pynac-0.7.26.sage-2020-04-03
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] 
>>>> 
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] Please email sage-devel (
>>>> http://groups.google.com/group/sage-devel)
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] explaining the problem and including the 
>>>> log file
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03]   
>>>> /Applications/sage-9.1/logs/pkgs/pynac-0.7.26.sage-2020-04-03.log
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] Describe your computer, operating 
>>>> system, etc.
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] If you want to try to fix the problem 
>>>> yourself, *don't* just cd to
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] 
>>>> /Applications/sage-9.1/local/var/tmp/sage/build/pynac-0.7.26.sage-2020-04-03
>>>>  
>>>> and type 'make' or whatever is appropriate.
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] Instead, the following commands setup 
>>>> all environment variables
>>>>
>>>> [pynac-0.7.26.sage-2020-04-03] correctly and load a subshell for 

Re: [sage-release] Re: Sage 9.1 released

[Matthias Köppe]

Could you also send the top-level config.log?

On Friday, May 22, 2020 at 4:17:29 AM UTC-7, Dima Pasechnik wrote:
>
> [pynac-0.7.26.sage-2020-04-03] Please email sage-devel (
> http://groups.google.com/group/sage-devel)
>
> [pynac-0.7.26.sage-2020-04-03] explaining the problem and including the 
> log file
>
> [pynac-0.7.26.sage-2020-04-03]   
> /Applications/sage-9.1/logs/pkgs/pynac-0.7.26.sage-2020-04-03.log
>
> [pynac-0.7.26.sage-2020-04-03] Describe your computer, operating system, 
> etc.
>
> we need more details, in particular the log file mentioned.
>
> Please also describe your environment in more detail - do you use 
> Homebrew, Conda?
>
>
>
> On Fri, 22 May 2020, 12:09 Kenji Iohara,  > wrote:
>
>> Under Mac OS 10.15.4 I cannot compile sage-9.1. Can anyone help me 
>> compiling this ?
>> Thanks in advance.
>>
>>
>>
>> [pynac-0.7.26.sage-2020-04-03] In file included from add.cpp:23:
>>
>> [pynac-0.7.26.sage-2020-04-03] In file included from ./add.h:26:
>>
>> [pynac-0.7.26.sage-2020-04-03] In file included from ./expairseq.h:27:
>>
>> [pynac-0.7.26.sage-2020-04-03] In file included from ./expair.h:27:
>>
>> [pynac-0.7.26.sage-2020-04-03] ./numeric.h:53:10: fatal error: 'gmp.h' 
>> file not found
>>
>> [pynac-0.7.26.sage-2020-04-03] #include 
>>
>> [pynac-0.7.26.sage-2020-04-03]  ^~~
>>
>> [pynac-0.7.26.sage-2020-04-03] 1 error generated.
>>
>> [pynac-0.7.26.sage-2020-04-03] make[6]: *** [libpynac_la-add.lo] Error 1
>>
>> [pynac-0.7.26.sage-2020-04-03] make[5]: *** [all-recursive] Error 1
>>
>> [pynac-0.7.26.sage-2020-04-03] make[4]: *** [all] Error 2
>>
>> [pynac-0.7.26.sage-2020-04-03] 
>> 
>>
>> [pynac-0.7.26.sage-2020-04-03] Error building pynac-0.7.26.sage-2020-04-03
>>
>> [pynac-0.7.26.sage-2020-04-03] 
>> 
>>
>> [pynac-0.7.26.sage-2020-04-03] 
>>
>> [pynac-0.7.26.sage-2020-04-03] real 0m14.577s
>>
>> [pynac-0.7.26.sage-2020-04-03] user 0m7.225s
>>
>> [pynac-0.7.26.sage-2020-04-03] sys 0m4.471s
>>
>> [pynac-0.7.26.sage-2020-04-03] 
>> 
>>
>> [pynac-0.7.26.sage-2020-04-03] Error installing package 
>> pynac-0.7.26.sage-2020-04-03
>>
>> [pynac-0.7.26.sage-2020-04-03] 
>> 
>>
>> [pynac-0.7.26.sage-2020-04-03] Please email sage-devel (
>> http://groups.google.com/group/sage-devel)
>>
>> [pynac-0.7.26.sage-2020-04-03] explaining the problem and including the 
>> log file
>>
>> [pynac-0.7.26.sage-2020-04-03]   
>> /Applications/sage-9.1/logs/pkgs/pynac-0.7.26.sage-2020-04-03.log
>>
>> [pynac-0.7.26.sage-2020-04-03] Describe your computer, operating system, 
>> etc.
>>
>> [pynac-0.7.26.sage-2020-04-03] If you want to try to fix the problem 
>> yourself, *don't* just cd to
>>
>> [pynac-0.7.26.sage-2020-04-03] 
>> /Applications/sage-9.1/local/var/tmp/sage/build/pynac-0.7.26.sage-2020-04-03 
>> and type 'make' or whatever is appropriate.
>>
>> [pynac-0.7.26.sage-2020-04-03] Instead, the following commands setup all 
>> environment variables
>>
>> [pynac-0.7.26.sage-2020-04-03] correctly and load a subshell for you to 
>> debug the error:
>>
>> [pynac-0.7.26.sage-2020-04-03]   (cd 
>> '/Applications/sage-9.1/local/var/tmp/sage/build/pynac-0.7.26.sage-2020-04-03'
>>  
>> && '/Applications/sage-9.1/sage' --buildsh)
>>
>> [pynac-0.7.26.sage-2020-04-03] When you are done debugging, you can type 
>> "exit" to leave the subshell.
>>
>> [pynac-0.7.26.sage-2020-04-03] 
>> 
>>
>> make[3]: *** 
>> [/Applications/sage-9.1/local/var/lib/sage/installed/pynac-0.7.26.sage-2020-04-03]
>>  
>> Error 1
>>
>> make[2]: *** [all-start] Error 2
>>
>>
>> real 115m32.342s
>>
>> user 113m1.880s
>>
>> sys 16m40.116s
>>
>> ***
>>
>> Error building Sage.
>>
>> 2020年5月21日木曜日 0時53分54秒 UTC+2 Volker Braun:
>>>
>>> The "master" git branch has been updated to Sage-9.1. As always, you can 
>>> get the latest beta version from the "develop" git branch. Alternatively, 
>>> the self-contained source tarball is at 
>>> http://www.sagemath.org/download-latest.html
>>>
>>> There was no change over 9.1.rc5
>>>
>>> -- 
>> You received this message because you are subscribed to the Google Groups 
>> "sage-release" group.
>> To unsubscribe from this group and stop receiving emails from it, send an 
>> email to sage-r...@googlegroups.com .
>> To view this discussion on the web visit 
>> https://groups.google.com/d/msgid/sage-release/75e63209-4c15-42a7-99a7-f40dcb391e09%40googlegroups.com
>>  
>> 
>> .
>>
>

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Re: [sage-release] Sage 9.1 released

[Matthias Köppe]

On Thursday, May 21, 2020 at 1:35:45 PM UTC-7, kcrisman wrote:
>
>  Anyway, I'd like to (if possible) build one last py2 binary that way for 
> the mirrors
>

+1. We should definitely have py2 binaries of 9.1. 

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[sage-release] Re: Sage 9.1 released

[Matthias Köppe]

On Wednesday, May 20, 2020 at 3:53:54 PM UTC-7, Volker Braun wrote:
>
> The "master" git branch has been updated to Sage-9.1. As always, you can 
> get the latest beta version from the "develop" git branch. Alternatively, 
> the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html
>
>
I have updated https://wiki.sagemath.org/ReleaseTours/sage-9.1

When http://doc.sagemath.org/ is updated, it would be good to also add 
links from the descriptions of the new features to the corresponding 
sections in the reference manual.


 

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[sage-release] Re: Sage 9.1 released

[Matthias Köppe]

On Wednesday, May 20, 2020 at 3:53:54 PM UTC-7, Volker Braun wrote:
>
> The "master" git branch has been updated to Sage-9.1. As always, you can 
> get the latest beta version from the "develop" git branch. Alternatively, 
> the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html
>
> There was no change over 9.1.rc5
>
>
Wonderful!

 

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[sage-release] Re: Sage 9.1.rc5 released

[Matthias Köppe]

On Wednesday, May 13, 2020 at 3:41:44 PM UTC-7, Volker Braun wrote:
>
> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html 
>
> 765c5cb3e2 (trac/develop, tag: 9.1.rc5) Updated SageMath version to 9.1.rc5
> d15ac822ae Trac #29674: fedora-32:  If gcc 10 is found, install gcc spkg; 
> fix building gcc (9.2.0) spkg with gcc 10
>

The automatic tests at https://github.com/sagemath/sage/actions have 
completed. Some builds time out (> 6h), due to random variation of the 
build times. Minor doctest failures in various builds, similar to what has 
been noted for previous betas and rcs.

*Linux* (https://github.com/sagemath/sage/actions/runs/104055531):
*– ubuntu*-{trusty,xenial,bionic,eoan,focal} OK
*– debian*-{jessie,stretch,buster,bullseye,sid} OK (build failures for 
debian-sid-standard are from temporary Debian package installation problems)
*–* *linuxmint*-{17,18,19,19.3} OK
*–* *fedora*-{26,27,28,29,30,31,32} OK. In particular, *fedora-32* now 
builds gcc and succeeds (some builds time out)
*– centos*-{7,8} OK
*–* *archlinux*-latest OK
*–* *slackware*-14.2 OK

*Linux 32bit* (with timeouts)
*–* *ubuntu*-eoan-i386 OK
*–* *debian*-buster-i386 OK

*macOS* (also at https://github.com/sagemath/sage/actions/runs/104055531):
*–* *homebrew*-macos OK (until runner was killed)
*–* homebrew-macos-*python3_xcode* OK
*–* homebrew-macos-*python3_pythonorg* OK

*Linux/macOS + conda-forge* (known limitation: only "standard" builds work; 
"minimal" and "standard-python2" builds do not work)
*–* *docker*-conda-forge OK 
*–* local*-ubuntu-*conda-forge OK
*–* local*-macos-*conda-forge OK

*Windows* (Cygwin64) (
https://github.com/sagemath/sage/actions/runs/104055539):
*–* *cygwin-standard* build completed without errors (stage-iii)

Looks like this is ready for releasing.


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