[sage-support] Systemwide 2.8.4.1 install on Ubuntu Feisty
Hi I installed 2.8.4.1-i686-ubuntu instead of 2.8-i686 on ubuntu feisty today. I install systemwide, as root: cd /usr/local/src/ wget http://www.sagemath.org/SAGEbin/linux/32bit/sage-2.8.4.1-i686-ubuntu-Linux.tar.gz tar xvzf sage-2.8.4.1-i686-ubuntu-Linux.tar.gz cp sage-2.8.4.1-i686-Linux/sage /usr/local/bin/ sed -ie 's#=.#=/usr/local/src/sage-2.8.4.1-i686-Linux/#' /usr/local/bin/sage rm /usr/local/bin/sagee chmod a+r -R /usr/local/src/sage-2.8.4.1-i686-Linux/ Before this used to be fine. Now I have to run once as root to create SAGE_ROOT/tmp, and thereafter a normal user still cannot run notebook() 0 [EMAIL PROTECTED]:~$sage -- | SAGE Version 2.8.4.1, Release Date: 2007-09-09 | | Type notebook() for the GUI, and license() for information.| -- sage: notebook() --- type 'exceptions.IOError' Traceback (most recent call last) /usr/local/src/sage-2.8.4.1-i686-Linux/ipython console in module() /usr/local/src/sage-2.8.4.1-i686-Linux/local/lib/python2.5/site-packages/sage/server/notebook/notebook_object.py in __call__(self, *args, **kwds) 120 121 def __call__(self, *args, **kwds): -- 122 return self.notebook(*args, **kwds) 123 124 notebook = run_notebook.notebook_twisted /usr/local/src/sage-2.8.4.1-i686-Linux/local/lib/python2.5/site-packages/sage/server/notebook/run_notebook.py in notebook_twisted(self, directory, port, address, port_tries, secure, reset, accounts, server_pool, ulimit, timeout, open_viewer) 105 print Updating to new format complete. 106 -- 107 nb.save() 108 del nb 109 /usr/local/src/sage-2.8.4.1-i686-Linux/local/lib/python2.5/site-packages/sage/server/notebook/notebook.py in save(self, filename) 1346 if not os.path.exists(D): 1347 os.makedirs(D) - 1348 SageObject.save(self, F, compress=False) 1349 #print Saved notebook to '%s'.%F 1350 #print Press control-C to stop the notebook server. /usr/local/src/sage-2.8.4.1-i686-Linux/sage_object.pyx in sage_object.SageObject.save() type 'exceptions.IOError': [Errno 13] Permission denied: '/usr/local/src/sage-2.8.4.1-i686-Linux/sage_notebook/nb.sobj' sage: regards, Jan -- .~. /V\ Jan Groenewald /( )\www.aims.ac.za ^^-^^ --~--~-~--~~~---~--~~ To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-support URLs: http://sage.math.washington.edu/sage/ and http://sage.scipy.org/sage/ -~--~~~~--~~--~--~---
[sage-support] Re: Systemwide 2.8.4.1 install on Ubuntu Feisty
On 9/14/07, Jan Groenewald [EMAIL PROTECTED] wrote: I installed 2.8.4.1-i686-ubuntu instead of 2.8-i686 on ubuntu feisty today. I install systemwide, as root: cd /usr/local/src/ wget http://www.sagemath.org/SAGEbin/linux/32bit/sage-2.8.4.1-i686-ubuntu-Linux.tar.gz tar xvzf sage-2.8.4.1-i686-ubuntu-Linux.tar.gz cp sage-2.8.4.1-i686-Linux/sage /usr/local/bin/ sed -ie 's#=.#=/usr/local/src/sage-2.8.4.1-i686-Linux/#' /usr/local/bin/sage rm /usr/local/bin/sagee chmod a+r -R /usr/local/src/sage-2.8.4.1-i686-Linux/ Before this used to be fine. Now I have to run once as root to create SAGE_ROOT/tmp, No matter what, with any version of Sage, you would have to run it once as root (or whatever user owns those files) the first time because the Sage install tree has moved and many files that hardcode directory paths have to be updated. That tmp directory is created then. That said, in this particular case creating the tmp directory in SAGE_ROOT is now totally unnecessary so I've removed the code that does this (for the next release). and thereafter a normal user still cannot run notebook() This is actually an unrelated issue. A user must have write permissions to the *current* directory to run the notebook, since it stores its state files in the current directory. Try instead: [EMAIL PROTECTED]:~$ cd [EMAIL PROTECTED]:~$ sage 0 [EMAIL PROTECTED]:~$sage -- | SAGE Version 2.8.4.1, Release Date: 2007-09-09 | | Type notebook() for the GUI, and license() for information.| -- sage: notebook() --- type 'exceptions.IOError' Traceback (most recent call last) /usr/local/src/sage-2.8.4.1-i686-Linux/ipython console in module() /usr/local/src/sage-2.8.4.1-i686-Linux/local/lib/python2.5/site-packages/sage/server/notebook/notebook_object.py in __call__(self, *args, **kwds) 120 121 def __call__(self, *args, **kwds): -- 122 return self.notebook(*args, **kwds) 123 124 notebook = run_notebook.notebook_twisted /usr/local/src/sage-2.8.4.1-i686-Linux/local/lib/python2.5/site-packages/sage/server/notebook/run_notebook.py in notebook_twisted(self, directory, port, address, port_tries, secure, reset, accounts, server_pool, ulimit, timeout, open_viewer) 105 print Updating to new format complete. 106 -- 107 nb.save() 108 del nb 109 /usr/local/src/sage-2.8.4.1-i686-Linux/local/lib/python2.5/site-packages/sage/server/notebook/notebook.py in save(self, filename) 1346 if not os.path.exists(D): 1347 os.makedirs(D) - 1348 SageObject.save(self, F, compress=False) 1349 #print Saved notebook to '%s'.%F 1350 #print Press control-C to stop the notebook server. /usr/local/src/sage-2.8.4.1-i686-Linux/sage_object.pyx in sage_object.SageObject.save() type 'exceptions.IOError': [Errno 13] Permission denied: '/usr/local/src/sage-2.8.4.1-i686-Linux/sage_notebook/nb.sobj' sage: regards, Jan -- .~. /V\ Jan Groenewald /( )\www.aims.ac.za ^^-^^ -- William Stein Associate Professor of Mathematics University of Washington http://wstein.org --~--~-~--~~~---~--~~ To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-support URLs: http://sage.math.washington.edu/sage/ and http://sage.scipy.org/sage/ -~--~~~~--~~--~--~---
[sage-support] Re: sage-2.8.4.2 build report
On 9/14/07, Kate Minola [EMAIL PROTECTED] wrote: William, sage-2.8.4.2 built from source with gcc-4.2.1 passed all tests on x86_64-Linux ia64-Linux - YEAH!!! but sadly failed one test on x86-Linux (pentium4-fc6) Does it always fail that test in the same way? I can't replicate the problem on my 32-bit Linux RHEL5 machine: [EMAIL PROTECTED] sage-2.8.4.1]$ ./sage -t devel/sage/sage/plot/plot3d/transform.pyx sage -t devel/sage-main/sage/plot/plot3d/transform.pyx [6.9 s] -- All tests passed! Total time for all tests: 6.9 seconds Are you using RHEL5 or something else? This test is from a new doctest Robert Bradshaw just added that illustrates how to use the symbolic code in SAGE to compute transformation matrices, but there error indicates that there was probably a problem with the communication/synchronization between SAGE and Maxima via pexpect. sage -t devel/sage-main/sage/plot/plot3d/transform.pyx ** File transform.pyx, line 184: sage: m # or show(m) Expected: [ (1 - cos(theta))*x^2 + cos(theta) -(sin(theta)*abs(z)^3 + (cos(theta) - 1)*x*z^2*sqrt(-z^2 - x^2 + 1))/z^2 (sin(theta)*sqrt(-z^2 - x^2 + 1)*abs(z)^3 + (1 - cos(theta))*x*z^4)/z^3] [ sin(theta)*abs(z) + (1 - cos(theta))*x*sqrt(-z^2 - x^2 + 1) (cos(theta) - 1)*z^2 + (cos(theta) - 1)*x^2 + 1 -(sin(theta)*x*abs(z) + (cos(theta) - 1)*z^2*sqrt(-z^2 - x^2 + 1))/z] [-(sin(theta)*sqrt(-z^2 - x^2 + 1)*abs(z) + (cos(theta) - 1)*x*z^2)/z -((cos(theta) - 1)*z^2*sqrt(-z^2 - x^2 + 1) - sin(theta)*x*abs(z))/z (1 - cos(theta))*z^2 + cos(theta)] Got: [ sage18 sage20 sage22] [ sage24 sage26 sage28] [ sage30 (sage14*sqrt(1 - x^2)*sqrt(-z^2 - x^2 + 1)*abs(z) + (sage2*x^2 - sage2)*z*abs(z) + sage8*x*sqrt(1 - x^2)*z^2)/((x^2 - 1)*z) sage34] ** Kate -- Kate Minola University of Maryland, College Park -- William Stein Associate Professor of Mathematics University of Washington http://wstein.org --~--~-~--~~~---~--~~ To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-support URLs: http://sage.math.washington.edu/sage/ and http://sage.scipy.org/sage/ -~--~~~~--~~--~--~---
[sage-support] Re: sage-2.8.4.2 build report
On 9/14/07, William Stein [EMAIL PROTECTED] wrote: On 9/14/07, Kate Minola [EMAIL PROTECTED] wrote: William, sage-2.8.4.2 built from source with gcc-4.2.1 passed all tests on x86_64-Linux ia64-Linux - YEAH!!! but sadly failed one test on x86-Linux (pentium4-fc6) Are you using RHEL5 or something else? Never mind, I suspect pentium4-fc6 means that it's fedora core 6. -- William This test is from a new doctest Robert Bradshaw just added that illustrates how to use the symbolic code in SAGE to compute transformation matrices, but there error indicates that there was probably a problem with the communication/synchronization between SAGE and Maxima via pexpect. sage -t devel/sage-main/sage/plot/plot3d/transform.pyx ** File transform.pyx, line 184: sage: m # or show(m) Expected: [ (1 - cos(theta))*x^2 + cos(theta) -(sin(theta)*abs(z)^3 + (cos(theta) - 1)*x*z^2*sqrt(-z^2 - x^2 + 1))/z^2 (sin(theta)*sqrt(-z^2 - x^2 + 1)*abs(z)^3 + (1 - cos(theta))*x*z^4)/z^3] [ sin(theta)*abs(z) + (1 - cos(theta))*x*sqrt(-z^2 - x^2 + 1) (cos(theta) - 1)*z^2 + (cos(theta) - 1)*x^2 + 1 -(sin(theta)*x*abs(z) + (cos(theta) - 1)*z^2*sqrt(-z^2 - x^2 + 1))/z] [-(sin(theta)*sqrt(-z^2 - x^2 + 1)*abs(z) + (cos(theta) - 1)*x*z^2)/z -((cos(theta) - 1)*z^2*sqrt(-z^2 - x^2 + 1) - sin(theta)*x*abs(z))/z (1 - cos(theta))*z^2 + cos(theta)] Got: [ sage18 sage20 sage22] [ sage24 sage26 sage28] [ sage30 (sage14*sqrt(1 - x^2)*sqrt(-z^2 - x^2 + 1)*abs(z) + (sage2*x^2 - sage2)*z*abs(z) + sage8*x*sqrt(1 - x^2)*z^2)/((x^2 - 1)*z) sage34] ** Kate -- Kate Minola University of Maryland, College Park -- William Stein Associate Professor of Mathematics University of Washington http://wstein.org -- William Stein Associate Professor of Mathematics University of Washington http://wstein.org --~--~-~--~~~---~--~~ To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-support URLs: http://sage.math.washington.edu/sage/ and http://sage.scipy.org/sage/ -~--~~~~--~~--~--~---
[sage-support] Re: sage-2.8.4.2 build report
William, Never mind, I suspect pentium4-fc6 means that it's fedora core 6. Yes, Fedora Core 6 % cat /proc/version Linux version 2.6.20-1.2962.fc6 ([EMAIL PROTECTED] bc2-14.build.redhat.com) (gcc version 4.1.1 20070105 (Red Hat 4.1.1-51)) #1 SMP Tue Jun 19 19:27:14 EDT 2007 Does it always fail that test in the same way? If I just run .sage -t devel/sage-main/sage/plot/plot3d/transform.pyx _now_ I get an exception. (Why did I not see this from the output of 'make check'?) ** File transform.pyx, line 178: sage: for ij in ix: m[ij] = m[ij].simplify_rational() Exception raised: Traceback (most recent call last): File /home/kate/sage/sage-2.8.4.2-x86-Linux/local/lib/python2.5/ doctest.py, line 1212, in __run compileflags, 1) in test.globs File doctest __main__.example_0[21], line 1, in module for ij in ix: m[ij] = m[ij].simplify_rational()###line 178: sage: for ij in ix: m[ij] = m[ij].simplify_rational() File /home/kate/sage/sage-2.8.4.2-x86-Linux/local/lib/python2.5/ site-packages/sage/calculus/calculus.py, line 2091, in simplify_rational return self.parent()(self._maxima_().fullratsimp()) File /home/kate/sage/sage-2.8.4.2-x86-Linux/local/lib/python2.5/ site-packages/sage/calculus/calculus.py, line 331, in __call__ return self._coerce_impl(x) File /home/kate/sage/sage-2.8.4.2-x86-Linux/local/lib/python2.5/ site-packages/sage/calculus/calculus.py, line 339, in _coerce_impl return symbolic_expression_from_maxima_element(x) File /home/kate/sage/sage-2.8.4.2-x86-Linux/local/lib/python2.5/ site-packages/sage/calculus/calculus.py, line 4963, in symbolic_expression_from_maxima_element return symbolic_expression_from_maxima_string(x.name()) File /home/kate/sage/sage-2.8.4.2-x86-Linux/local/lib/python2.5/ site-packages/sage/calculus/calculus.py, line 4955, in symbolic_expression_from_maxima_string x = SR(w) File /home/kate/sage/sage-2.8.4.2-x86-Linux/local/lib/python2.5/ site-packages/sage/calculus/calculus.py, line 331, in __call__ return self._coerce_impl(x) File /home/kate/sage/sage-2.8.4.2-x86-Linux/local/lib/python2.5/ site-packages/sage/calculus/calculus.py, line 363, in _coerce_impl raise TypeError, cannot coerce type '%s' into a SymbolicExpression.%type(x) TypeError: cannot coerce type 'class 'sage.interfaces.sage0.Sage'' into a SymbolicExpression. ** File transform.pyx, line 184: sage: m # or show(m) Expected: [ (1 - cos(theta))*x^2 + cos(theta) -(sin(theta)*abs(z)^3 + (cos(theta) - 1)*x*z^2*sqrt(-z^2 - x^2 + 1))/z^2 (sin(theta)*sqrt(-z^2 - x^2 + 1)*abs(z)^3 + (1 - cos(theta))*x*z^4)/z^3] [ sin(theta)*abs(z) + (1 - cos(theta))*x*sqrt(-z^2 - x^2 + 1)(cos(theta) - 1)*z^2 + (cos(theta) - 1)*x^2 + 1 -(sin(theta)*x*abs(z) + (cos(theta) - 1)*z^2*sqrt(-z^2 - x^2 + 1))/z] [-(sin(theta)*sqrt(-z^2 - x^2 + 1)*abs(z) + (cos(theta) - 1)*x*z^2)/z -((cos(theta) - 1)*z^2*sqrt(-z^2 - x^2 + 1) - sin(theta)*x*abs(z))/z (1 - cos(theta))*z^2 + cos(theta)] Got: [ sage2 sage4 sage6] [ sage8 sage10 sage12] [sage14 sage16 sage18] ** 1 items had failures: 2 of 26 in __main__.example_0 ***Test Failed*** 2 failures. Kate --~--~-~--~~~---~--~~ To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-support URLs: http://sage.math.washington.edu/sage/ and http://sage.scipy.org/sage/ -~--~~~~--~~--~--~---
[sage-support] Re: sage-2.8.4.2 build report
On 9/14/07, Kate [EMAIL PROTECTED] wrote: Never mind, I suspect pentium4-fc6 means that it's fedora core 6. Yes, Fedora Core 6 % cat /proc/version Linux version 2.6.20-1.2962.fc6 ([EMAIL PROTECTED] bc2-14.build.redhat.com) (gcc version 4.1.1 20070105 (Red Hat 4.1.1-51)) #1 SMP Tue Jun 19 19:27:14 EDT 2007 Does it always fail that test in the same way? Thanks for the additional testing. I think the problem stems partly from the lack of a specialized type for symbolic matrices (which is actually frequently an efficiency issue for people): I've made this trac ticket 649: http://trac.sagemath.org/sage_trac/ticket/649 and made it a high priority. Please continue to report any and all problems you see with SAGE. William If I just run .sage -t devel/sage-main/sage/plot/plot3d/transform.pyx _now_ I get an exception. (Why did I not see this from the output of 'make check'?) ** File transform.pyx, line 178: sage: for ij in ix: m[ij] = m[ij].simplify_rational() Exception raised: Traceback (most recent call last): File /home/kate/sage/sage-2.8.4.2-x86-Linux/local/lib/python2.5/ doctest.py, line 1212, in __run compileflags, 1) in test.globs File doctest __main__.example_0[21], line 1, in module for ij in ix: m[ij] = m[ij].simplify_rational()###line 178: sage: for ij in ix: m[ij] = m[ij].simplify_rational() File /home/kate/sage/sage-2.8.4.2-x86-Linux/local/lib/python2.5/ site-packages/sage/calculus/calculus.py, line 2091, in simplify_rational return self.parent()(self._maxima_().fullratsimp()) File /home/kate/sage/sage-2.8.4.2-x86-Linux/local/lib/python2.5/ site-packages/sage/calculus/calculus.py, line 331, in __call__ return self._coerce_impl(x) File /home/kate/sage/sage-2.8.4.2-x86-Linux/local/lib/python2.5/ site-packages/sage/calculus/calculus.py, line 339, in _coerce_impl return symbolic_expression_from_maxima_element(x) File /home/kate/sage/sage-2.8.4.2-x86-Linux/local/lib/python2.5/ site-packages/sage/calculus/calculus.py, line 4963, in symbolic_expression_from_maxima_element return symbolic_expression_from_maxima_string(x.name()) File /home/kate/sage/sage-2.8.4.2-x86-Linux/local/lib/python2.5/ site-packages/sage/calculus/calculus.py, line 4955, in symbolic_expression_from_maxima_string x = SR(w) File /home/kate/sage/sage-2.8.4.2-x86-Linux/local/lib/python2.5/ site-packages/sage/calculus/calculus.py, line 331, in __call__ return self._coerce_impl(x) File /home/kate/sage/sage-2.8.4.2-x86-Linux/local/lib/python2.5/ site-packages/sage/calculus/calculus.py, line 363, in _coerce_impl raise TypeError, cannot coerce type '%s' into a SymbolicExpression.%type(x) TypeError: cannot coerce type 'class 'sage.interfaces.sage0.Sage'' into a SymbolicExpression. ** File transform.pyx, line 184: sage: m # or show(m) Expected: [ (1 - cos(theta))*x^2 + cos(theta) -(sin(theta)*abs(z)^3 + (cos(theta) - 1)*x*z^2*sqrt(-z^2 - x^2 + 1))/z^2 (sin(theta)*sqrt(-z^2 - x^2 + 1)*abs(z)^3 + (1 - cos(theta))*x*z^4)/z^3] [ sin(theta)*abs(z) + (1 - cos(theta))*x*sqrt(-z^2 - x^2 + 1)(cos(theta) - 1)*z^2 + (cos(theta) - 1)*x^2 + 1 -(sin(theta)*x*abs(z) + (cos(theta) - 1)*z^2*sqrt(-z^2 - x^2 + 1))/z] [-(sin(theta)*sqrt(-z^2 - x^2 + 1)*abs(z) + (cos(theta) - 1)*x*z^2)/z -((cos(theta) - 1)*z^2*sqrt(-z^2 - x^2 + 1) - sin(theta)*x*abs(z))/z (1 - cos(theta))*z^2 + cos(theta)] Got: [ sage2 sage4 sage6] [ sage8 sage10 sage12] [sage14 sage16 sage18] ** 1 items had failures: 2 of 26 in __main__.example_0 ***Test Failed*** 2 failures. Kate -- William Stein Associate Professor of Mathematics University of Washington http://wstein.org --~--~-~--~~~---~--~~ To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-support URLs: http://sage.math.washington.edu/sage/ and http://sage.scipy.org/sage/ -~--~~~~--~~--~--~---
[sage-support] using coeff() with the output of groebner()
Can anyone tell me how to extract the coefficients from the results of groebner()? I tried using coeff() but it gives me the error object has no attribute coeff. Thank you. David --~--~-~--~~~---~--~~ To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-support URLs: http://sage.math.washington.edu/sage/ and http://sage.scipy.org/sage/ -~--~~~~--~~--~--~---
[sage-support] Re: using coeff() with the output of groebner()
On Friday 14 September 2007, David Stahl wrote: Can anyone tell me how to extract the coefficients from the results of groebner()? Dou you mean Ideal.groebner_basis i.e. the SAGE method or SingularElement.groebner i.e. the Singular command? As you try to call coeff you probably refer tot he Singular function. Singular doesn't have a command coeff but it has a command coef (notice the single 'f'), described here: http://www.singular.uni-kl.de/Manual/3-0-3/sing_175.htm#SEC215 Martin -- name: Martin Albrecht _pgp: http://pgp.mit.edu:11371/pks/lookup?op=getsearch=0x8EF0DC99 _www: http://www.informatik.uni-bremen.de/~malb _jab: [EMAIL PROTECTED] --~--~-~--~~~---~--~~ To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-support URLs: http://sage.math.washington.edu/sage/ and http://sage.scipy.org/sage/ -~--~~~~--~~--~--~---
[sage-support] Re: using coeff() with the output of groebner()
I am using the sage command groebner_basis(). David On Sep 14, 1:05 pm, Martin Albrecht [EMAIL PROTECTED] wrote: On Friday 14 September 2007, David Stahl wrote: Can anyone tell me how to extract the coefficients from the results of groebner()? Dou you mean Ideal.groebner_basis i.e. the SAGE method or SingularElement.groebner i.e. the Singular command? As you try to call coeff you probably refer tot he Singular function. Singular doesn't have a command coeff but it has a command coef (notice the single 'f'), described here: http://www.singular.uni-kl.de/Manual/3-0-3/sing_175.htm#SEC215 Martin -- name: Martin Albrecht _pgp:http://pgp.mit.edu:11371/pks/lookup?op=getsearch=0x8EF0DC99 _www:http://www.informatik.uni-bremen.de/~malb _jab: [EMAIL PROTECTED] --~--~-~--~~~---~--~~ To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-support URLs: http://sage.math.washington.edu/sage/ and http://sage.scipy.org/sage/ -~--~~~~--~~--~--~---
[sage-support] Re: Systemwide 2.8.4.1 install on Ubuntu Feisty
This is actually an unrelated issue. A user must have write permissions to the *current* directory to run the notebook, since it stores its state files in the current directory. Try instead: I've noticed this before, but I've never really thought too much about it. Because of this, I've got sage_notebook directories sprinked throughout different random places on my machine, and it's a little annoying. (And I also think that it is a little rude of sage to do this without my knowlegde.) Is there a good reason that sage doesn't simply use the .sage directory that it creates under my home directory for this? If not, then I would like to call this a bug. And even if there is a good reason, then I still might like to call it a bug. --~--~-~--~~~---~--~~ To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-support URLs: http://sage.math.washington.edu/sage/ and http://sage.scipy.org/sage/ -~--~~~~--~~--~--~---
[sage-support] Re: Systemwide 2.8.4.1 install on Ubuntu Feisty
On 9/14/07, Jonathan Bober [EMAIL PROTECTED] wrote: This is actually an unrelated issue. A user must have write permissions to the *current* directory to run the notebook, since it stores its state files in the current directory. Try instead: I've noticed this before, but I've never really thought too much about it. Because of this, I've got sage_notebook directories sprinked throughout different random places on my machine, and it's a little annoying. (And I also think that it is a little rude of sage to do this without my knowlegde.) Is there a good reason that sage doesn't simply use the .sage directory that it creates under my home directory for this? If not, then I would like to call this a bug. And even if there is a good reason, then I still might like to call it a bug. This is certainly not a bug because it was a conscious design decision that a lot of people agree with and really like. The idea is that you start the SAGE notebook in a directory where you have some project, and the worksheets you get are exactly the ones related to that project. For me this is by far the most natural and best way to work. E.g., if I'm writing a book on the riemann hypothesis, my src directory looks like this: rh.tex ... lots of stuff .. sage_notebook And if I think do sage -notebook I get a notebook with all worksheets related to my work on the Riemann Hypothesis book. That said, I'm certainly interested in revisiting this design decision, so if people have strong feelings pro or con, please speak up. By the way, you could always write a script like this: - #!/bin/sh cd $HOME/.sage sage -notebook# or sage -inotebook -- and the SAGE notebook run via that script would then always use the version in .sage/. Another point to make is that the other servers included in Sage, e.g., wiki(), work the same way. I.e., they run from a local directory. - Another point is that I often want to run separate SAGE notebooks on the same computer, but with completely different sets of worksheets. I just do sage -notebook from one project directory and sage -notebook from another, and I'm good to go. William --~--~-~--~~~---~--~~ To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-support URLs: http://sage.math.washington.edu/sage/ and http://sage.scipy.org/sage/ -~--~~~~--~~--~--~---
[sage-support] Re: using coeff() with the output of groebner()
On 9/14/07, David Stahl [EMAIL PROTECTED] wrote: I am using the sage command groebner_basis(). David OK, this just seems like a case of showing you an example will answer the question. Let me know if it doesn't: sage: P.a,b,c = PolynomialRing(QQ,3, order='lex') sage: I = sage.rings.ideal.Katsura(P,3) # regenerate to prevent caching sage: g = I.groebner_basis() sage: g[0].coefficients() [84, -40, 1, 1] sage: g[1].coefficients() [7, 210, -79, 3] sage: g[2].coefficients() [1, 2, 2, -1] sage: g [84*c^4 - 40*c^3 + c^2 + c, 7*b + 210*c^3 - 79*c^2 + 3*c, a + 2*b + 2*c - 1] On Sep 14, 1:05 pm, Martin Albrecht [EMAIL PROTECTED] wrote: On Friday 14 September 2007, David Stahl wrote: Can anyone tell me how to extract the coefficients from the results of groebner()? Dou you mean Ideal.groebner_basis i.e. the SAGE method or SingularElement.groebner i.e. the Singular command? As you try to call coeff you probably refer tot he Singular function. Singular doesn't have a command coeff but it has a command coef (notice the single 'f'), described here: http://www.singular.uni-kl.de/Manual/3-0-3/sing_175.htm#SEC215 Martin -- name: Martin Albrecht _pgp:http://pgp.mit.edu:11371/pks/lookup?op=getsearch=0x8EF0DC99 _www:http://www.informatik.uni-bremen.de/~malb _jab: [EMAIL PROTECTED] -- William Stein Associate Professor of Mathematics University of Washington http://wstein.org --~--~-~--~~~---~--~~ To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-support URLs: http://sage.math.washington.edu/sage/ and http://sage.scipy.org/sage/ -~--~~~~--~~--~--~---
[sage-support] Re: Problems with building SAGE
On Sep 15, 12:19 am, Simon King [EMAIL PROTECTED] wrote: Dear Professor Stein, Well, he is known as William around here :) SNIP The binaries work fine, that was not the problem. Simply i wanted to learn to build SAGE by myself, and when i found that make finished but did not yield a working binary, i wanted to know why. I'm sorry that i didn't try to gzip the install.log in my first mail. It is now less than 1 MB, hence should be accepted by your mail system -- see attachment. Got the attachment, looking at it. Could you check if you have termcap and its development package installed? readline usually defaults to termcap and only uses ncurses as an optional library to link against, but who knows what the OpenSuSE people did. I have a 10.1 OpenSuSE x86-64 box, but I have to check out there what happens. Yours Simon install.log.gz 965KDownload Cheers, Michael --~--~-~--~~~---~--~~ To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-support URLs: http://sage.math.washington.edu/sage/ and http://sage.scipy.org/sage/ -~--~~~~--~~--~--~---
[sage-support] Re: Problems with building SAGE
On Sep 15, 12:20 am, mabshoff [EMAIL PROTECTED] dortmund.de wrote: On Sep 15, 12:19 am, Simon King [EMAIL PROTECTED] wrote: Dear Professor Stein, Well, he is known as William around here :) SNIP The binaries work fine, that was not the problem. Simply i wanted to learn to build SAGE by myself, and when i found that make finished but did not yield a working binary, i wanted to know why. I'm sorry that i didn't try to gzip the install.log in my first mail. It is now less than 1 MB, hence should be accepted by your mail system -- see attachment. Got the attachment, looking at it. Could you check if you have termcap and its development package installed? readline usually defaults to termcap and only uses ncurses as an optional library to link against, but who knows what the OpenSuSE people did. I have a 10.1 OpenSuSE x86-64 box, but I have to check out there what happens. Yours Simon install.log.gz 965KDownload Cheers, Michael Hello Simon, I looked at the log. Readline builds fine, but there is trouble when building python: gcc -pthread -shared build/temp.linux-x86_64-2.5/usr/local/ sage-2.8.4.1/spkg/build/python-2.5.1.p6/src/Modules/readline.o -L /usr/ lib/termcap -L/usr/local/sage-2.8.4.1/local/lib -L/usr/local/lib - lreadline -lncurses -o build/lib.linux-x86_64-2.5/readline.so /usr/ lib64/gcc/x86_64-suse-linux/4.1.2/../../../../x86_64-suse-linux/bin/ ld: /usr/lib/libncurses.a(lib_termcap.o): relocation R_X86_64_32S against `numcodes' can not be used when making a shared object; recompile with -fPIC /usr/lib/libncurses.a: could not read symbols: Bad value collect2: ld returned 1 exit status So, the interesting question is now: What to do? Python's configure has no switch to enable or disable [n]curses, so please reinstall that rpm and try again. Otherwise we need to set up a VMWare image with OpenSuSE 10.2 and see if the problem only happens to you. To compare here is my line from the log: gcc -pthread -shared build/temp.linux-x86_64-2.5/tmp/Work-mabshoff/ sage-2.8.4.2/spkg/build/python-2.5.1.p7/src/Modules/readl ine.o -L/usr/lib/termcap -L/tmp/Work-mabshoff/sage-2.8.4.2/local/lib - L/usr/local/lib -lreadline -lncurses -o build/lib.linu x-x86_64-2.5/readline.so building 'crypt' extension Cheers, Michael --~--~-~--~~~---~--~~ To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-support URLs: http://sage.math.washington.edu/sage/ and http://sage.scipy.org/sage/ -~--~~~~--~~--~--~---
[sage-support] upgrading from 2.8.4.1 to 2.8.4.2 error
I'm getting this upgrade error: Using SAGE Server http://www.sagemath.org//packages http://www.sagemath.org//packages/install -- install [.] http://www.sagemath.org//packages/standard/list -- list [.] http://www.sagemath.org//packages/standard/deps -- deps [..] http://www.sagemath.org//packages/standard/newest_version -- newest_version [.] http://www.sagemath.org//packages/standard/README -- README [.] http://www.sagemath.org//packages/standard/doc-2.8.3.spkg -- doc-2.8.3.spkg [.] /home/tclemans/sage-2.8.4.1/local/bin/sage-update: Error downloading http://www.sagemath.org//packages/standard/doc-2.8.3.spkg Error getting new packages! Using SAGE Server http://www.sagemath.org//packages http://www.sagemath.org//packages/install -- install [.] http://www.sagemath.org//packages/standard/list -- list [.] http://www.sagemath.org//packages/standard/deps -- deps [..] http://www.sagemath.org//packages/standard/newest_version -- newest_version [.] http://www.sagemath.org//packages/standard/README -- README [.] http://www.sagemath.org//packages/standard/doc-2.8.3.spkg -- doc-2.8.3.spkg [.] /home/tclemans/sage-2.8.4.1/local/bin/sage-update: Error downloading http://www.sagemath.org//packages/standard/doc-2.8.3.spkg Error getting new packages! --~--~-~--~~~---~--~~ To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-support URLs: http://sage.math.washington.edu/sage/ and http://sage.scipy.org/sage/ -~--~~~~--~~--~--~---
[sage-support] Re: upgrading from 2.8.4.1 to 2.8.4.2 error
On 9/14/07, Timothy Clemans [EMAIL PROTECTED] wrote: I'm getting this upgrade error: Thanks for reporting this! The problem should now be fixed. William Using SAGE Server http://www.sagemath.org//packages http://www.sagemath.org//packages/install -- install [.] http://www.sagemath.org//packages/standard/list -- list [.] http://www.sagemath.org//packages/standard/deps -- deps [..] http://www.sagemath.org//packages/standard/newest_version -- newest_version [.] http://www.sagemath.org//packages/standard/README -- README [.] http://www.sagemath.org//packages/standard/doc-2.8.3.spkg -- doc-2.8.3.spkg [.] /home/tclemans/sage-2.8.4.1/local/bin/sage-update: Error downloading http://www.sagemath.org//packages/standard/doc-2.8.3.spkg Error getting new packages! Using SAGE Server http://www.sagemath.org//packages http://www.sagemath.org//packages/install -- install [.] http://www.sagemath.org//packages/standard/list -- list [.] http://www.sagemath.org//packages/standard/deps -- deps [..] http://www.sagemath.org//packages/standard/newest_version -- newest_version [.] http://www.sagemath.org//packages/standard/README -- README [.] http://www.sagemath.org//packages/standard/doc-2.8.3.spkg -- doc-2.8.3.spkg [.] /home/tclemans/sage-2.8.4.1/local/bin/sage-update: Error downloading http://www.sagemath.org//packages/standard/doc-2.8.3.spkg Error getting new packages! -- William Stein Associate Professor of Mathematics University of Washington http://wstein.org --~--~-~--~~~---~--~~ To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-support URLs: http://sage.math.washington.edu/sage/ and http://sage.scipy.org/sage/ -~--~~~~--~~--~--~---
