Re: [spctools-discuss] Upcoming Trans-Proteomic Pipeline (TPP) course

[Luis]

Hello Sud,
You can find some info and links to the download instructions and release 
notes at our official website:
http://www.tppms.org/

The latest TPP version is 6.3.2, released in May 2023;  please let us know 
if you have any issues installing it. 

Thanks,
--Luis


On Friday, July 21, 2023 at 12:10:55 PM UTC-7 kumarsu...@gmail.com wrote:

> Dear Luis,
> Can you please share the link to download the latest version of TPP which 
> we will be using in the training. 
> Best
> Sud
>
> On Wed, Jul 19, 2023 at 4:50 PM 'Luis Mendoza' via spctools-discuss <
> spctools...@googlegroups.com> wrote:
>
>> Hi everyone, the next Trans-Proteomic Pipeline (TPP) course will be held 
>> next week. 
>>
>>
>> More info below.
>>
>> --Luis
>>
>>
>> *Proteomics Informatics Course at ISB in Seattle, Washington: July 26 – 
>> 28, 2023 * Course Objective: 
>>
>> The SPC is pleased to offer a three-day intensive course in the use of a 
>> suite of open-source software tools designed for the analysis, validation, 
>> storage and interpretation of data obtained from large-scale quantitative 
>> proteomics experiments using various labeling methods, multi-dimensional 
>> chromatography and tandem mass spectrometry.  Through daily lectures and 
>> tutorials, each course participant should become proficient in the use of 
>> the tools.
>> Prerequisites: 
>>
>> Prerequisite for participation in the course is a demonstrated 
>> understanding in the operation of tandem mass spectrometers, the basic 
>> structure and interpretation of peptide MS/MS spectra and proficiency in 
>> the use of computers.*  A* *commitment to attend the entire course is 
>> also required.*
>>
>> Participants must provide their own (64-bit Windows) laptop, and have the 
>> TPP software pre-installed.
>>
>> *Registrations must be completed by July 24, 2023.*
>> Location: 
>>
>> *Institute for Systems Biology*
>> 401 Terry Ave North
>> Seattle, WA 98109
>>
>> Dates: 
>>
>> Wednesday, July 26, 8:00 am through Friday, July 28, 5:00 pm.
>>
>> Participants must commit to attending the entire course and bring their 
>> own laptop with the TPP software pre-installed.
>>
>>
>> Lodging, Meals and Transportation: 
>>
>> These expenses and arrangements are the responsibility of the 
>> participants.
>> Fees:
>> No fee for this three-day course
>>
>> Register: 
>>
>> *Please fill out the attached document and send directly to 
>> luis.m...@isbscience.org*
>>
>>
>> Preliminary Schedule: [image: image.png]
>>
>> -- 
>> You received this message because you are subscribed to the Google Groups 
>> "spctools-discuss" group.
>> To unsubscribe from this group and stop receiving emails from it, send an 
>> email to spctools-discu...@googlegroups.com.
>>
> To view this discussion on the web visit 
>> https://groups.google.com/d/msgid/spctools-discuss/CACyS9bob8THZAwMHzfQmFxpwifamSraU9DiKGc99gCv1ydaVhQ%40mail.gmail.com
>>  
>> 
>> .
>>
>
>
> -- 
> ---
> The real voyage of discovery consists not in seeking new lands but seeing 
> with new eyes. — Marcel Proust
>
> Dr. Sudarshan Kumar
> (B.V.Sc.& A.H., M.V.Sc., PhD.)
> Scientist
> Animal Biotechnology Center
> (Proteomics and Cell Biology Lab.)
> National Dairy Research Institute Karnal, 132001
> Haryana, India
> Contact No 09254912456
> URL www.ndri.res.in
> Orcid Id: https://orcid.org/-0002-9816-4307
>
>

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Re: [spctools-discuss] Re: Upcoming Trans-Proteomic Pipeline (TPP) course

['Luis Mendoza' via spctools-discuss]

Hello,
Please find the Word document attached to the original course
announcement.  You can also find it on the archived google-groups chat:
https://groups.google.com/g/spctools-discuss/c/Hnkw6NKsrgA/m/mn7hfOhfCQAJ

Cheers,
--Luis


On Fri, Jul 21, 2023 at 1:24 AM Aparna Agarwal 
wrote:

> Dear  Luis,
>
> Please send the link of the registration form.
>
> Regards
>
> On Fri, Jul 21, 2023 at 1:42 PM 'Luis Mendoza' via spctools-discuss <
> spctools-discuss@googlegroups.com> wrote:
>
>> Hello Emma, Manuela, and others interested in attending virtually,
>>
>> We have decided to provide a remote option to attend the course via Zoom
>> on a limited basis.  Please fill out and send me the registration form, and
>> note in the comments that you would like this option.
>>
>> Please do note the following:
>>
>>- The course will be held 8am-430pm local Seattle time (with breaks
>>throughout); please make sure that you can attend.
>>- You will need to install TPP and download data to a 64-bit Windows
>>machine so that you can execute the tutorials.  This is typically quite
>>straightforward, and we'll be happy to help you install before the course
>>begins, but we'll be limited in that ability after that.
>>- We plan on having remote participants muted, but will be happy to
>>take questions via chat.
>>- One-on-one assistance will not be possible, or very limited at best.
>>
>> More information regarding course materials and links will be sent to
>> those who successfully register by Monday afternoon.
>>
>> Thank you for your continued support and interest in this course!
>> -- Luis
>>
>>
>> On Thu, Jul 20, 2023 at 2:42 AM Manuela Piazzi 
>> wrote:
>>
>>> Awesome! I would really like to attend to get an update and to refresh
>>> my TPP skills, but I'm not based in the US as well and I might only attend
>>> virtually
>>>
>>> Cheers,
>>> Manuela
>>>
>>> Il giorno gio 20 lug 2023 alle ore 11:13 Emma Whittington <
>>> emawh...@gmail.com> ha scritto:
>>>
 Thank you for offering this. Will there be an option to attend
 virtually? I am not based in the US so would find it impossible to attend
 on short notice.

 All the best,
 Emma

 On Thursday, 20 July 2023 at 01:50:49 UTC+2 Luis Mendoza wrote:

> Hi everyone, the next Trans-Proteomic Pipeline (TPP) course will be
> held next week.
>
>
> More info below.
>
> --Luis
>
>
> *Proteomics Informatics Course at ISB in Seattle, Washington: July 26
> – 28, 2023 * Course Objective:
>
> The SPC is pleased to offer a three-day intensive course in the use of
> a suite of open-source software tools designed for the analysis,
> validation, storage and interpretation of data obtained from large-scale
> quantitative proteomics experiments using various labeling methods,
> multi-dimensional chromatography and tandem mass spectrometry.  Through
> daily lectures and tutorials, each course participant should become
> proficient in the use of the tools.
> Prerequisites:
>
> Prerequisite for participation in the course is a demonstrated
> understanding in the operation of tandem mass spectrometers, the basic
> structure and interpretation of peptide MS/MS spectra and proficiency in
> the use of computers.*  A* *commitment to attend the entire course is
> also required.*
>
> Participants must provide their own (64-bit Windows) laptop, and have
> the TPP software pre-installed.
>
> *Registrations must be completed by July 24, 2023.*
> Location:
>
> *Institute for Systems Biology*
> 401 Terry Ave North
> Seattle, WA 98109
>
> Dates:
>
> Wednesday, July 26, 8:00 am through Friday, July 28, 5:00 pm.
>
> Participants must commit to attending the entire course and bring
> their own laptop with the TPP software pre-installed.
>
>
> Lodging, Meals and Transportation:
>
> These expenses and arrangements are the responsibility of the
> participants.
> Fees:
> No fee for this three-day course
>
> Register:
>
> *Please fill out the attached document and send directly to
> luis.m...@isbscience.org*
>
>
> Preliminary Schedule: [image: image.png]
>
> --
 You received this message because you are subscribed to the Google
 Groups "spctools-discuss" group.
 To unsubscribe from this group and stop receiving emails from it, send
 an email to spctools-discuss+unsubscr...@googlegroups.com.
 To view this discussion on the web visit
 https://groups.google.com/d/msgid/spctools-discuss/bf286ca2-e741-4efa-bd0c-678beedc6de6n%40googlegroups.com
 
 .

>>>
>>>
>>> --
>>> Dr Manuela Piazzi, PhD
>>> IGM-CNR c/o Rizzoli Orthopedic Institute

Re: [spctools-discuss] Re: Upcoming Trans-Proteomic Pipeline (TPP) course

[Aparna Agarwal]

Dear  Luis,

Please send the link of the registration form.

Regards

On Fri, Jul 21, 2023 at 1:42 PM 'Luis Mendoza' via spctools-discuss <
spctools-discuss@googlegroups.com> wrote:

> Hello Emma, Manuela, and others interested in attending virtually,
>
> We have decided to provide a remote option to attend the course via Zoom
> on a limited basis.  Please fill out and send me the registration form, and
> note in the comments that you would like this option.
>
> Please do note the following:
>
>- The course will be held 8am-430pm local Seattle time (with breaks
>throughout); please make sure that you can attend.
>- You will need to install TPP and download data to a 64-bit Windows
>machine so that you can execute the tutorials.  This is typically quite
>straightforward, and we'll be happy to help you install before the course
>begins, but we'll be limited in that ability after that.
>- We plan on having remote participants muted, but will be happy to
>take questions via chat.
>- One-on-one assistance will not be possible, or very limited at best.
>
> More information regarding course materials and links will be sent to
> those who successfully register by Monday afternoon.
>
> Thank you for your continued support and interest in this course!
> -- Luis
>
>
> On Thu, Jul 20, 2023 at 2:42 AM Manuela Piazzi 
> wrote:
>
>> Awesome! I would really like to attend to get an update and to refresh my
>> TPP skills, but I'm not based in the US as well and I might only attend
>> virtually
>>
>> Cheers,
>> Manuela
>>
>> Il giorno gio 20 lug 2023 alle ore 11:13 Emma Whittington <
>> emawh...@gmail.com> ha scritto:
>>
>>> Thank you for offering this. Will there be an option to attend
>>> virtually? I am not based in the US so would find it impossible to attend
>>> on short notice.
>>>
>>> All the best,
>>> Emma
>>>
>>> On Thursday, 20 July 2023 at 01:50:49 UTC+2 Luis Mendoza wrote:
>>>
 Hi everyone, the next Trans-Proteomic Pipeline (TPP) course will be
 held next week.


 More info below.

 --Luis


 *Proteomics Informatics Course at ISB in Seattle, Washington: July 26 –
 28, 2023 * Course Objective:

 The SPC is pleased to offer a three-day intensive course in the use of
 a suite of open-source software tools designed for the analysis,
 validation, storage and interpretation of data obtained from large-scale
 quantitative proteomics experiments using various labeling methods,
 multi-dimensional chromatography and tandem mass spectrometry.  Through
 daily lectures and tutorials, each course participant should become
 proficient in the use of the tools.
 Prerequisites:

 Prerequisite for participation in the course is a demonstrated
 understanding in the operation of tandem mass spectrometers, the basic
 structure and interpretation of peptide MS/MS spectra and proficiency in
 the use of computers.*  A* *commitment to attend the entire course is
 also required.*

 Participants must provide their own (64-bit Windows) laptop, and have
 the TPP software pre-installed.

 *Registrations must be completed by July 24, 2023.*
 Location:

 *Institute for Systems Biology*
 401 Terry Ave North
 Seattle, WA 98109

 Dates:

 Wednesday, July 26, 8:00 am through Friday, July 28, 5:00 pm.

 Participants must commit to attending the entire course and bring their
 own laptop with the TPP software pre-installed.


 Lodging, Meals and Transportation:

 These expenses and arrangements are the responsibility of the
 participants.
 Fees:
 No fee for this three-day course

 Register:

 *Please fill out the attached document and send directly to
 luis.m...@isbscience.org*


 Preliminary Schedule: [image: image.png]

 --
>>> You received this message because you are subscribed to the Google
>>> Groups "spctools-discuss" group.
>>> To unsubscribe from this group and stop receiving emails from it, send
>>> an email to spctools-discuss+unsubscr...@googlegroups.com.
>>> To view this discussion on the web visit
>>> https://groups.google.com/d/msgid/spctools-discuss/bf286ca2-e741-4efa-bd0c-678beedc6de6n%40googlegroups.com
>>> 
>>> .
>>>
>>
>>
>> --
>> Dr Manuela Piazzi, PhD
>> IGM-CNR c/o Rizzoli Orthopedic Institute
>> via di Barbiano 1/10
>> 40136 Bologna -IT-
>> off. +390516366769
>> mob. +393495101877
>>
>> --
>> You received this message because you are subscribed to the Google Groups
>> "spctools-discuss" group.
>> To unsubscribe from this group and stop receiving emails from it, send an
>> email to spctools-discuss+unsubscr...@googlegroups.com.
>> To view this discussion on the web visit
>> 

Re: [spctools-discuss] Re: Upcoming Trans-Proteomic Pipeline (TPP) course

['Luis Mendoza' via spctools-discuss]

Hello Emma, Manuela, and others interested in attending virtually,

We have decided to provide a remote option to attend the course via Zoom on
a limited basis.  Please fill out and send me the registration form, and
note in the comments that you would like this option.

Please do note the following:

   - The course will be held 8am-430pm local Seattle time (with breaks
   throughout); please make sure that you can attend.
   - You will need to install TPP and download data to a 64-bit Windows
   machine so that you can execute the tutorials.  This is typically quite
   straightforward, and we'll be happy to help you install before the course
   begins, but we'll be limited in that ability after that.
   - We plan on having remote participants muted, but will be happy to take
   questions via chat.
   - One-on-one assistance will not be possible, or very limited at best.

More information regarding course materials and links will be sent to those
who successfully register by Monday afternoon.

Thank you for your continued support and interest in this course!
-- Luis


On Thu, Jul 20, 2023 at 2:42 AM Manuela Piazzi 
wrote:

> Awesome! I would really like to attend to get an update and to refresh my
> TPP skills, but I'm not based in the US as well and I might only attend
> virtually
>
> Cheers,
> Manuela
>
> Il giorno gio 20 lug 2023 alle ore 11:13 Emma Whittington <
> emawh...@gmail.com> ha scritto:
>
>> Thank you for offering this. Will there be an option to attend virtually?
>> I am not based in the US so would find it impossible to attend on short
>> notice.
>>
>> All the best,
>> Emma
>>
>> On Thursday, 20 July 2023 at 01:50:49 UTC+2 Luis Mendoza wrote:
>>
>>> Hi everyone, the next Trans-Proteomic Pipeline (TPP) course will be
>>> held next week.
>>>
>>>
>>> More info below.
>>>
>>> --Luis
>>>
>>>
>>> *Proteomics Informatics Course at ISB in Seattle, Washington: July 26 –
>>> 28, 2023 * Course Objective:
>>>
>>> The SPC is pleased to offer a three-day intensive course in the use of a
>>> suite of open-source software tools designed for the analysis, validation,
>>> storage and interpretation of data obtained from large-scale quantitative
>>> proteomics experiments using various labeling methods, multi-dimensional
>>> chromatography and tandem mass spectrometry.  Through daily lectures and
>>> tutorials, each course participant should become proficient in the use of
>>> the tools.
>>> Prerequisites:
>>>
>>> Prerequisite for participation in the course is a demonstrated
>>> understanding in the operation of tandem mass spectrometers, the basic
>>> structure and interpretation of peptide MS/MS spectra and proficiency in
>>> the use of computers.*  A* *commitment to attend the entire course is
>>> also required.*
>>>
>>> Participants must provide their own (64-bit Windows) laptop, and have
>>> the TPP software pre-installed.
>>>
>>> *Registrations must be completed by July 24, 2023.*
>>> Location:
>>>
>>> *Institute for Systems Biology*
>>> 401 Terry Ave North
>>> Seattle, WA 98109
>>>
>>> Dates:
>>>
>>> Wednesday, July 26, 8:00 am through Friday, July 28, 5:00 pm.
>>>
>>> Participants must commit to attending the entire course and bring their
>>> own laptop with the TPP software pre-installed.
>>>
>>>
>>> Lodging, Meals and Transportation:
>>>
>>> These expenses and arrangements are the responsibility of the
>>> participants.
>>> Fees:
>>> No fee for this three-day course
>>>
>>> Register:
>>>
>>> *Please fill out the attached document and send directly to
>>> luis.m...@isbscience.org*
>>>
>>>
>>> Preliminary Schedule: [image: image.png]
>>>
>>> --
>> You received this message because you are subscribed to the Google Groups
>> "spctools-discuss" group.
>> To unsubscribe from this group and stop receiving emails from it, send an
>> email to spctools-discuss+unsubscr...@googlegroups.com.
>> To view this discussion on the web visit
>> https://groups.google.com/d/msgid/spctools-discuss/bf286ca2-e741-4efa-bd0c-678beedc6de6n%40googlegroups.com
>> 
>> .
>>
>
>
> --
> Dr Manuela Piazzi, PhD
> IGM-CNR c/o Rizzoli Orthopedic Institute
> via di Barbiano 1/10
> 40136 Bologna -IT-
> off. +390516366769
> mob. +393495101877
>
> --
> You received this message because you are subscribed to the Google Groups
> "spctools-discuss" group.
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> email to spctools-discuss+unsubscr...@googlegroups.com.
> To view this discussion on the web visit
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> 
> .
>

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