Re: [spctools-discuss] Re: Query related to Lorikeet viewer PTMprophet results in TPP

['David Shteynberg' via spctools-discuss]

It appears that you are trying to view the results on a Windows machine but
the data was processed on Linux with absolute paths to the mzML data
files.  Unless the files are properly referenced at their correct locations
on your computer, this will not work.   You might consider running the TPP
Tools -> Utilities -> Update Paths application on the system to which the
data has been copied.  Let us know if that solves the problem.

-David

On Thu, Mar 5, 2020 at 7:40 AM Mehar Un Nissa 
wrote:

> Dear Sir/Madam,
> Please reply to my query in the above mail.
> Thanks and regards,
>
> *Mehar Un Nissa*
> Research Scholar,
> Proteomics Lab.
> Department of Biosciences and Bioengineering,
> Indian Institute of Technology, Bombay-400076
>
>
> On Wed, Mar 4, 2020 at 11:38 AM Mehar Un Nissa <
> meharunnissako...@gmail.com> wrote:
>
>> Hello Sir/Madam,
>> We used TPP and PTMprophet for PTM analysis.
>> PTM  taken (Phosphorylation- STY).
>> *I want to see the spectra in Lorikeet viewer but it is showing following
>> error.*
>> [image: image.png]
>>
>> Please help me solve this.
>> Looking forward to hearing from you.
>>
>> Thanks and regards,
>>
>> *Mehar Un Nissa*
>> Research Scholar,
>> Proteomics Lab.
>> Department of Biosciences and Bioengineering,
>> Indian Institute of Technology, Bombay-400076
>>
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> 
> .
>

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Re: [spctools-discuss] Re: Query related to Lorikeet viewer PTMprophet results in TPP

['Luis Mendoza' via spctools-discuss]

Hello,

It seems that Lorikeet is unable to find the mzML file to extract and
display the spectrum.  Did you move the files after you conducted the
analysis?

If you look at the bottom of your screenshot, you can see that the file
must be located under "/proteomics/jpanga/."  Can you confirm that the
file is in that location on your file server?

Cheers,
--Luis


On Thu, Mar 5, 2020 at 7:40 AM Mehar Un Nissa 
wrote:

> Dear Sir/Madam,
> Please reply to my query in the above mail.
> Thanks and regards,
>
> *Mehar Un Nissa*
> Research Scholar,
> Proteomics Lab.
> Department of Biosciences and Bioengineering,
> Indian Institute of Technology, Bombay-400076
>
>
> On Wed, Mar 4, 2020 at 11:38 AM Mehar Un Nissa <
> meharunnissako...@gmail.com> wrote:
>
>> Hello Sir/Madam,
>> We used TPP and PTMprophet for PTM analysis.
>> PTM  taken (Phosphorylation- STY).
>> *I want to see the spectra in Lorikeet viewer but it is showing following
>> error.*
>> [image: image.png]
>>
>> Please help me solve this.
>> Looking forward to hearing from you.
>>
>> Thanks and regards,
>>
>> *Mehar Un Nissa*
>> Research Scholar,
>> Proteomics Lab.
>> Department of Biosciences and Bioengineering,
>> Indian Institute of Technology, Bombay-400076
>>
> --
> You received this message because you are subscribed to the Google Groups
> "spctools-discuss" group.
> To unsubscribe from this group and stop receiving emails from it, send an
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> 
> .
>

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