Re: XMl generated by AnalysisEngineDescription.toXML not accepted by UIMA-as

[r. r.]

Jerry, that was it - I added annotatorImplementationName and it worked!
Well, it failed at first, but when I added the correct classpath all went 
smoothly

Many thanks for your help!
Best regards
-Robert








 > Оригинално писмо 

 >От: Jaroslaw Cwiklik cwik...@apache.org

 >Относно: Re: XMl generated by AnalysisEngineDescription.toXML not accepted by 
 >UIMA-as

 >До: user@uima.apache.org

 >Изпратено на: 19.09.2017 22:59



 
> Just a clarification on this xml element (annotatorImplementationName),
 
> from UIMA documentation:
 
> 
 
> "The next subelement,  is how the UIMA
 
> framework determines which annotator class to use. This should contain a
 
> fully-qualified Java class name for Java implementations, or the name of a
 
> .dll or .so file for C++ implementations."
 
> 
 
> So add the fully class name which implements your AE in the
 
> annotatorImplementationName.
 
> 
 
> Jerry
 
> 
 
> On Tue, Sep 19, 2017 at 3:40 PM, Jaroslaw Cwiklik 
 
> wrote:
 
> 
 
> > OK, this is much clearer now. It looks like the NPE comes from the uima-as
 
> > code while trying to determine name for the service. Its trying to use your
 
> > analysis engine  descriptor   WHATEVER > annotatorImplementationName>
 
> > Is this missing in your AE descriptor? If so add it and give it a
 
> > meaningful name.
 
> >
 
> > Jerry
 
> >
 
> > On Tue, Sep 19, 2017 at 1:38 PM, r. r.  wrote:
 
> >
 
> >> Great - I added this and the file is preserved now
 
> >> posted it here: https://pastebin.com/Z2pHa0nN
 
> >>
 
> >> And there is a uima.log indeed! posted it here:
 
> >> https://pastebin.com/dQ4vUW5T
 
> >>
 
> >> It mentions 'primitive_ctrl_...', is that correct? Because the AE is an
 
> >> aggregate one.
 
> >> Before running this test, I ran the uima-as examples and they work fine
 
> >>
 
> >> Thanks!
 
> >> -Robert
 
> >>
 
> >>
 
> >>
 
> >>
 
> >>
 
> >>
 
> >>
 
> >>  > Оригинално писмо 
 
> >>
 
> >>  >От: Jaroslaw Cwiklik cwik...@apache.org
 
> >>
 
> >>  >Относно: Re: XMl generated by AnalysisEngineDescription.toXML not
 
> >> accepted by UIMA-as
 
> >>
 
> >>  >До: user@uima.apache.org
 
> >>
 
> >>  >Изпратено на: 19.09.2017 20:07
 
> >>
 
> >>
 
> >>
 
> >>
 
> >> > I setup my classpath with all the jars needed by the uima-as runtime.
 
> >> What
 
> >>
 
> >> > is strange is that you report a NullPointerException in a constructor of
 
> >>
 
> >> > one of the UIMA-AS classes. I would have expected
 
> >> ClassNotFoundException if
 
> >>
 
> >> > a jar was missing. Unless the actual cause is swallowed somewhere. Do
 
> >> you
 
> >>
 
> >> > have uima.log in a directory where u start the service?
 
> >>
 
> >> >
 
> >>
 
> >> > To preserve a Spring file add: -uimaEeDebug right after -saxonURL and
 
> >> -xslt
 
> >>
 
> >> >  When you get the failure look for a path to it as in your original
 
> >>
 
> >> > error:
 
> >>
 
> >> >
 
> >>
 
> >> > ...Error creating bean with name 'primitive_ctlr_DKProStanfordQueue_1'
 
> >>
 
> >> > defined in URL [*file:/var/folders/dt/**vmntv
 
> >> 00526g5s84b85rqwmm5qbfkqb/T/*
 
> >>
 
> >> > UIMAdd2springOutput2528967577403356774.xml]
 
> >>
 
> >> >
 
> >>
 
> >> > Jerry
 
> >>
 
> >> >
 
> >>
 
> >> > On Tue, Sep 19, 2017 at 12:46 PM, r. r.  wrote:
 
> >>
 
> >> >
 
> >>
 
> >> > > Thanks Jerry,
 
> >>
 
> >> > > No, that file is gone after the command fails.
 
> >>
 
> >> > > Do I have to setup the jars in use in the class path or is UIMA-as
 
> >> getting
 
> >>
 
> >> > > all the info to locate jars from the descriptor xmls?
 
> >>
 
> >> > > Or maybe a way to see a yet more detailed error description by the
 
> >> deploy
 
> >>
 
> >> > > tool?
 
> >>
 
> >> > >
 
> >>
 
> >> > > I'm running this with Java 8 on OSX Sierra:
 
> >>
 
> >> > > java version "1.8.0_45"
 
> >>
 
> >> > > Java(TM) SE Runtime Environment (build 1.8.0_45-b14)
 
> >>
 
> >> > > Java HotSpot(TM) 64-Bit Server VM (build 25.45-b02, mixed mode)
 
> >>
 
> >> > >
 
> >>
 
> >> > > Best regards
 
> >>
 
> >> > > -Robert
 
> >>
 
> >> > >
 
> >>
 
> >> > >
 
> >>
 
> >> > >
 
> >>
 
> >> > >
 
> >>
 
> >> > >
 
> >>
 
> >> > >
 
> >>
 
> >> > >
 
> >>
 
> >> > >  > Оригинално писмо 
 
> >>
 
> >> > >
 
> >>
 
> >> > >  >От: Jaroslaw Cwiklik cwik...@apache.org
 
> >>
 
> >> > >
 
> >>
 
> >> > >  >Относно: Re: XMl generated by AnalysisEngineDescription.toXML not
 
> >>
 
> >> > > accepted by UIMA-as
 
> >>
 
> >> > >
 
> >>
 
> >> > >  >До: user@uima.apache.org
 
> >>
 
> >> > >
 
> >>
 
> >> > >  >Изпратено на: 19.09.2017 19:28
 
> >>
 
> >> > >
 
> >>
 
> >> > >
 
> >>
 
> >> > >
 
> >>
 
> >> > >
 
> >>
 
> >> > > > Robert, the DD looks ok to me. I actually stripped down one of my
 
> >> DD to
 
> >>
 
> >> > >
 
> >>
 
> >> > > > look just as yours and it deployed fine. Do you still have this
 
> >> file:
 
> >>
 
> >> > >
 
> >>
 
> >> > > > file:/var/folders/dt/vmntv00526g5s84b85rqwmm5qbfkqb/T/
 

Re: XMl generated by AnalysisEngineDescription.toXML not accepted by UIMA-as

[Jaroslaw Cwiklik]

Just a clarification on this xml element (annotatorImplementationName),
from UIMA documentation:

"The next subelement,  is how the UIMA
framework determines which annotator class to use. This should contain a
fully-qualified Java class name for Java implementations, or the name of a
.dll or .so file for C++ implementations."

So add the fully class name which implements your AE in the
annotatorImplementationName.

Jerry

On Tue, Sep 19, 2017 at 3:40 PM, Jaroslaw Cwiklik 
wrote:

> OK, this is much clearer now. It looks like the NPE comes from the uima-as
> code while trying to determine name for the service. Its trying to use your
> analysis engine  descriptor   WHATEVER annotatorImplementationName>
> Is this missing in your AE descriptor? If so add it and give it a
> meaningful name.
>
> Jerry
>
> On Tue, Sep 19, 2017 at 1:38 PM, r. r.  wrote:
>
>> Great - I added this and the file is preserved now
>> posted it here: https://pastebin.com/Z2pHa0nN
>>
>> And there is a uima.log indeed! posted it here:
>> https://pastebin.com/dQ4vUW5T
>>
>> It mentions 'primitive_ctrl_...', is that correct? Because the AE is an
>> aggregate one.
>> Before running this test, I ran the uima-as examples and they work fine
>>
>> Thanks!
>> -Robert
>>
>>
>>
>>
>>
>>
>>
>>  > Оригинално писмо 
>>
>>  >От: Jaroslaw Cwiklik cwik...@apache.org
>>
>>  >Относно: Re: XMl generated by AnalysisEngineDescription.toXML not
>> accepted by UIMA-as
>>
>>  >До: user@uima.apache.org
>>
>>  >Изпратено на: 19.09.2017 20:07
>>
>>
>>
>>
>> > I setup my classpath with all the jars needed by the uima-as runtime.
>> What
>>
>> > is strange is that you report a NullPointerException in a constructor of
>>
>> > one of the UIMA-AS classes. I would have expected
>> ClassNotFoundException if
>>
>> > a jar was missing. Unless the actual cause is swallowed somewhere. Do
>> you
>>
>> > have uima.log in a directory where u start the service?
>>
>> >
>>
>> > To preserve a Spring file add: -uimaEeDebug right after -saxonURL and
>> -xslt
>>
>> >  When you get the failure look for a path to it as in your original
>>
>> > error:
>>
>> >
>>
>> > ...Error creating bean with name 'primitive_ctlr_DKProStanfordQueue_1'
>>
>> > defined in URL [*file:/var/folders/dt/**vmntv
>> 00526g5s84b85rqwmm5qbfkqb/T/*
>>
>> > UIMAdd2springOutput2528967577403356774.xml]
>>
>> >
>>
>> > Jerry
>>
>> >
>>
>> > On Tue, Sep 19, 2017 at 12:46 PM, r. r.  wrote:
>>
>> >
>>
>> > > Thanks Jerry,
>>
>> > > No, that file is gone after the command fails.
>>
>> > > Do I have to setup the jars in use in the class path or is UIMA-as
>> getting
>>
>> > > all the info to locate jars from the descriptor xmls?
>>
>> > > Or maybe a way to see a yet more detailed error description by the
>> deploy
>>
>> > > tool?
>>
>> > >
>>
>> > > I'm running this with Java 8 on OSX Sierra:
>>
>> > > java version "1.8.0_45"
>>
>> > > Java(TM) SE Runtime Environment (build 1.8.0_45-b14)
>>
>> > > Java HotSpot(TM) 64-Bit Server VM (build 25.45-b02, mixed mode)
>>
>> > >
>>
>> > > Best regards
>>
>> > > -Robert
>>
>> > >
>>
>> > >
>>
>> > >
>>
>> > >
>>
>> > >
>>
>> > >
>>
>> > >
>>
>> > >  > Оригинално писмо 
>>
>> > >
>>
>> > >  >От: Jaroslaw Cwiklik cwik...@apache.org
>>
>> > >
>>
>> > >  >Относно: Re: XMl generated by AnalysisEngineDescription.toXML not
>>
>> > > accepted by UIMA-as
>>
>> > >
>>
>> > >  >До: user@uima.apache.org
>>
>> > >
>>
>> > >  >Изпратено на: 19.09.2017 19:28
>>
>> > >
>>
>> > >
>>
>> > >
>>
>> > >
>>
>> > > > Robert, the DD looks ok to me. I actually stripped down one of my
>> DD to
>>
>> > >
>>
>> > > > look just as yours and it deployed fine. Do you still have this
>> file:
>>
>> > >
>>
>> > > > file:/var/folders/dt/vmntv00526g5s84b85rqwmm5qbfkqb/T/
>>
>> > >
>>
>> > > > UIMAdd2springOutput2528967577403356774.xml
>>
>> > >
>>
>> > > >
>>
>> > >
>>
>> > > > This is the transformed file which is fed to Spring factory. Can you
>>
>> > > share
>>
>> > >
>>
>> > > > this via pastbin?
>>
>> > >
>>
>> > > > Also which version of java are you using?
>>
>> > >
>>
>> > > >
>>
>> > >
>>
>> > > > Jerry
>>
>> > >
>>
>> > > >
>>
>> > >
>>
>> > > >
>>
>> > >
>>
>> > > > On Tue, Sep 19, 2017 at 11:45 AM, Jaroslaw Cwiklik <
>> cwik...@apache.org>
>>
>> > >
>>
>> > > > wrote:
>>
>> > >
>>
>> > > >
>>
>> > >
>>
>> > > > > Hi Robert, any chance u can paste the deployment descriptor for a
>>
>> > > review?
>>
>> > >
>>
>> > > > > Were there any other errors/warnings before? The UIMA-AS
>> deployment
>>
>> > >
>>
>> > > > > descriptor undergoes a transformation under the covers producing
>> Spring
>>
>> > >
>>
>> > > > > Framework compatible file which is fed to Spring Factory for
>>
>> > > instantiating
>>
>> > >
>>
>> > > > > java code. In this
>>
>> > >
>>
>> > > > > last step it appears that there is an exception as you described.
>>
>> > > Wonder
>>
>> > >
>>
>> > > > > if there is other relevant info before this error
>>
>> > 

Re: XMl generated by AnalysisEngineDescription.toXML not accepted by UIMA-as

[Jaroslaw Cwiklik]

OK, this is much clearer now. It looks like the NPE comes from the uima-as
code while trying to determine name for the service. Its trying to use your
analysis engine  descriptor
WHATEVER
Is this missing in your AE descriptor? If so add it and give it a
meaningful name.

Jerry

On Tue, Sep 19, 2017 at 1:38 PM, r. r.  wrote:

> Great - I added this and the file is preserved now
> posted it here: https://pastebin.com/Z2pHa0nN
>
> And there is a uima.log indeed! posted it here:
> https://pastebin.com/dQ4vUW5T
>
> It mentions 'primitive_ctrl_...', is that correct? Because the AE is an
> aggregate one.
> Before running this test, I ran the uima-as examples and they work fine
>
> Thanks!
> -Robert
>
>
>
>
>
>
>
>  > Оригинално писмо 
>
>  >От: Jaroslaw Cwiklik cwik...@apache.org
>
>  >Относно: Re: XMl generated by AnalysisEngineDescription.toXML not
> accepted by UIMA-as
>
>  >До: user@uima.apache.org
>
>  >Изпратено на: 19.09.2017 20:07
>
>
>
>
> > I setup my classpath with all the jars needed by the uima-as runtime.
> What
>
> > is strange is that you report a NullPointerException in a constructor of
>
> > one of the UIMA-AS classes. I would have expected ClassNotFoundException
> if
>
> > a jar was missing. Unless the actual cause is swallowed somewhere. Do you
>
> > have uima.log in a directory where u start the service?
>
> >
>
> > To preserve a Spring file add: -uimaEeDebug right after -saxonURL and
> -xslt
>
> >  When you get the failure look for a path to it as in your original
>
> > error:
>
> >
>
> > ...Error creating bean with name 'primitive_ctlr_DKProStanfordQueue_1'
>
> > defined in URL [*file:/var/folders/dt/**vmntv00526g5s84b85rqwmm5qbfkqb
> /T/*
>
> > UIMAdd2springOutput2528967577403356774.xml]
>
> >
>
> > Jerry
>
> >
>
> > On Tue, Sep 19, 2017 at 12:46 PM, r. r.  wrote:
>
> >
>
> > > Thanks Jerry,
>
> > > No, that file is gone after the command fails.
>
> > > Do I have to setup the jars in use in the class path or is UIMA-as
> getting
>
> > > all the info to locate jars from the descriptor xmls?
>
> > > Or maybe a way to see a yet more detailed error description by the
> deploy
>
> > > tool?
>
> > >
>
> > > I'm running this with Java 8 on OSX Sierra:
>
> > > java version "1.8.0_45"
>
> > > Java(TM) SE Runtime Environment (build 1.8.0_45-b14)
>
> > > Java HotSpot(TM) 64-Bit Server VM (build 25.45-b02, mixed mode)
>
> > >
>
> > > Best regards
>
> > > -Robert
>
> > >
>
> > >
>
> > >
>
> > >
>
> > >
>
> > >
>
> > >
>
> > >  > Оригинално писмо 
>
> > >
>
> > >  >От: Jaroslaw Cwiklik cwik...@apache.org
>
> > >
>
> > >  >Относно: Re: XMl generated by AnalysisEngineDescription.toXML not
>
> > > accepted by UIMA-as
>
> > >
>
> > >  >До: user@uima.apache.org
>
> > >
>
> > >  >Изпратено на: 19.09.2017 19:28
>
> > >
>
> > >
>
> > >
>
> > >
>
> > > > Robert, the DD looks ok to me. I actually stripped down one of my DD
> to
>
> > >
>
> > > > look just as yours and it deployed fine. Do you still have this file:
>
> > >
>
> > > > file:/var/folders/dt/vmntv00526g5s84b85rqwmm5qbfkqb/T/
>
> > >
>
> > > > UIMAdd2springOutput2528967577403356774.xml
>
> > >
>
> > > >
>
> > >
>
> > > > This is the transformed file which is fed to Spring factory. Can you
>
> > > share
>
> > >
>
> > > > this via pastbin?
>
> > >
>
> > > > Also which version of java are you using?
>
> > >
>
> > > >
>
> > >
>
> > > > Jerry
>
> > >
>
> > > >
>
> > >
>
> > > >
>
> > >
>
> > > > On Tue, Sep 19, 2017 at 11:45 AM, Jaroslaw Cwiklik <
> cwik...@apache.org>
>
> > >
>
> > > > wrote:
>
> > >
>
> > > >
>
> > >
>
> > > > > Hi Robert, any chance u can paste the deployment descriptor for a
>
> > > review?
>
> > >
>
> > > > > Were there any other errors/warnings before? The UIMA-AS deployment
>
> > >
>
> > > > > descriptor undergoes a transformation under the covers producing
> Spring
>
> > >
>
> > > > > Framework compatible file which is fed to Spring Factory for
>
> > > instantiating
>
> > >
>
> > > > > java code. In this
>
> > >
>
> > > > > last step it appears that there is an exception as you described.
>
> > > Wonder
>
> > >
>
> > > > > if there is other relevant info before this error
>
> > >
>
> > > > >
>
> > >
>
> > > > > Jerry
>
> > >
>
> > > > >
>
> > >
>
> > > > > On Tue, Sep 19, 2017 at 11:23 AM, r. r.  wrote:
>
> > >
>
> > > > >
>
> > >
>
> > > > >> Hello
>
> > >
>
> > > > >> I wrote an AE pipeline with uimaFit (and DKPro), which works fine
> in
>
> > > the
>
> > >
>
> > > > >> command line (mvn exec:java ...).
>
> > >
>
> > > > >> I successfully exported the xml descriptor via
>
> > >
>
> > > > >> AnalysisEngineDescription.toXML and want to use it with UIMA-as
>
> > >
>
> > > > >> (apache-uima-as-2.9.0).
>
> > >
>
> > > > >> My first attempt with deployAsyncService.sh failed with:
>
> > >
>
> > > > >>
>
> > >
>
> > > > >> "SEPM0004: When 'standalone' or 'doctype-system' is specified, the
>
> > >
>
> > > > >> document must be
>
> > >
>
> > > > >>   

Re: XMl generated by AnalysisEngineDescription.toXML not accepted by UIMA-as

[r. r.]

Great - I added this and the file is preserved now
posted it here: https://pastebin.com/Z2pHa0nN

And there is a uima.log indeed! posted it here:
https://pastebin.com/dQ4vUW5T

It mentions 'primitive_ctrl_...', is that correct? Because the AE is an 
aggregate one.
Before running this test, I ran the uima-as examples and they work fine

Thanks!
-Robert







 > Оригинално писмо 

 >От: Jaroslaw Cwiklik cwik...@apache.org

 >Относно: Re: XMl generated by AnalysisEngineDescription.toXML not accepted by 
 >UIMA-as

 >До: user@uima.apache.org

 >Изпратено на: 19.09.2017 20:07



 
> I setup my classpath with all the jars needed by the uima-as runtime. What
 
> is strange is that you report a NullPointerException in a constructor of
 
> one of the UIMA-AS classes. I would have expected ClassNotFoundException if
 
> a jar was missing. Unless the actual cause is swallowed somewhere. Do you
 
> have uima.log in a directory where u start the service?
 
> 
 
> To preserve a Spring file add: -uimaEeDebug right after -saxonURL and -xslt
 
>  When you get the failure look for a path to it as in your original
 
> error:
 
> 
 
> ...Error creating bean with name 'primitive_ctlr_DKProStanfordQueue_1'
 
> defined in URL [*file:/var/folders/dt/**vmntv00526g5s84b85rqwmm5qbfkqb/T/*
 
> UIMAdd2springOutput2528967577403356774.xml]
 
> 
 
> Jerry
 
> 
 
> On Tue, Sep 19, 2017 at 12:46 PM, r. r.  wrote:
 
> 
 
> > Thanks Jerry,
 
> > No, that file is gone after the command fails.
 
> > Do I have to setup the jars in use in the class path or is UIMA-as getting
 
> > all the info to locate jars from the descriptor xmls?
 
> > Or maybe a way to see a yet more detailed error description by the deploy
 
> > tool?
 
> >
 
> > I'm running this with Java 8 on OSX Sierra:
 
> > java version "1.8.0_45"
 
> > Java(TM) SE Runtime Environment (build 1.8.0_45-b14)
 
> > Java HotSpot(TM) 64-Bit Server VM (build 25.45-b02, mixed mode)
 
> >
 
> > Best regards
 
> > -Robert
 
> >
 
> >
 
> >
 
> >
 
> >
 
> >
 
> >
 
> >  > Оригинално писмо 
 
> >
 
> >  >От: Jaroslaw Cwiklik cwik...@apache.org
 
> >
 
> >  >Относно: Re: XMl generated by AnalysisEngineDescription.toXML not
 
> > accepted by UIMA-as
 
> >
 
> >  >До: user@uima.apache.org
 
> >
 
> >  >Изпратено на: 19.09.2017 19:28
 
> >
 
> >
 
> >
 
> >
 
> > > Robert, the DD looks ok to me. I actually stripped down one of my DD to
 
> >
 
> > > look just as yours and it deployed fine. Do you still have this file:
 
> >
 
> > > file:/var/folders/dt/vmntv00526g5s84b85rqwmm5qbfkqb/T/
 
> >
 
> > > UIMAdd2springOutput2528967577403356774.xml
 
> >
 
> > >
 
> >
 
> > > This is the transformed file which is fed to Spring factory. Can you
 
> > share
 
> >
 
> > > this via pastbin?
 
> >
 
> > > Also which version of java are you using?
 
> >
 
> > >
 
> >
 
> > > Jerry
 
> >
 
> > >
 
> >
 
> > >
 
> >
 
> > > On Tue, Sep 19, 2017 at 11:45 AM, Jaroslaw Cwiklik 
 
> >
 
> > > wrote:
 
> >
 
> > >
 
> >
 
> > > > Hi Robert, any chance u can paste the deployment descriptor for a
 
> > review?
 
> >
 
> > > > Were there any other errors/warnings before? The UIMA-AS deployment
 
> >
 
> > > > descriptor undergoes a transformation under the covers producing Spring
 
> >
 
> > > > Framework compatible file which is fed to Spring Factory for
 
> > instantiating
 
> >
 
> > > > java code. In this
 
> >
 
> > > > last step it appears that there is an exception as you described.
 
> > Wonder
 
> >
 
> > > > if there is other relevant info before this error
 
> >
 
> > > >
 
> >
 
> > > > Jerry
 
> >
 
> > > >
 
> >
 
> > > > On Tue, Sep 19, 2017 at 11:23 AM, r. r.  wrote:
 
> >
 
> > > >
 
> >
 
> > > >> Hello
 
> >
 
> > > >> I wrote an AE pipeline with uimaFit (and DKPro), which works fine in
 
> > the
 
> >
 
> > > >> command line (mvn exec:java ...).
 
> >
 
> > > >> I successfully exported the xml descriptor via
 
> >
 
> > > >> AnalysisEngineDescription.toXML and want to use it with UIMA-as
 
> >
 
> > > >> (apache-uima-as-2.9.0).
 
> >
 
> > > >> My first attempt with deployAsyncService.sh failed with:
 
> >
 
> > > >>
 
> >
 
> > > >> "SEPM0004: When 'standalone' or 'doctype-system' is specified, the
 
> >
 
> > > >> document must be
 
> >
 
> > > >>   well-formed; but this document contains a top-level text node"
 
> >
 
> > > >>
 
> >
 
> > > >> but then I realised I need to supply an analysisEngineDeploymentDescri
 
> > ption
 
> >
 
> > > >> to UIMA-as, so I amended this with a descriptor pointing to the one
 
> >
 
> > > >> generated by toXML().
 
> >
 
> > > >>
 
> >
 
> > > >> Now the error I'm getting is:
 
> >
 
> > > >>
 
> >
 
> > > >> "Exception encountered during context initialization - cancelling
 
> > refresh
 
> >
 
> > > >> attempt: org.springframework.beans.factory.BeanCreationException:
 
> > Error
 
> >
 
> > > >> creating bean with name 'primitive_ctlr_DKProStanfordQueue_1'
 
> > defined in
 
> >

Re: XMl generated by AnalysisEngineDescription.toXML not accepted by UIMA-as

[Jaroslaw Cwiklik]

I setup my classpath with all the jars needed by the uima-as runtime. What
is strange is that you report a NullPointerException in a constructor of
one of the UIMA-AS classes. I would have expected ClassNotFoundException if
a jar was missing. Unless the actual cause is swallowed somewhere. Do you
have uima.log in a directory where u start the service?

To preserve a Spring file add: -uimaEeDebug right after -saxonURL and -xslt
 When you get the failure look for a path to it as in your original
error:

...Error creating bean with name 'primitive_ctlr_DKProStanfordQueue_1'
defined in URL [*file:/var/folders/dt/**vmntv00526g5s84b85rqwmm5qbfkqb/T/*
UIMAdd2springOutput2528967577403356774.xml]

Jerry

On Tue, Sep 19, 2017 at 12:46 PM, r. r.  wrote:

> Thanks Jerry,
> No, that file is gone after the command fails.
> Do I have to setup the jars in use in the class path or is UIMA-as getting
> all the info to locate jars from the descriptor xmls?
> Or maybe a way to see a yet more detailed error description by the deploy
> tool?
>
> I'm running this with Java 8 on OSX Sierra:
> java version "1.8.0_45"
> Java(TM) SE Runtime Environment (build 1.8.0_45-b14)
> Java HotSpot(TM) 64-Bit Server VM (build 25.45-b02, mixed mode)
>
> Best regards
> -Robert
>
>
>
>
>
>
>
>  > Оригинално писмо 
>
>  >От: Jaroslaw Cwiklik cwik...@apache.org
>
>  >Относно: Re: XMl generated by AnalysisEngineDescription.toXML not
> accepted by UIMA-as
>
>  >До: user@uima.apache.org
>
>  >Изпратено на: 19.09.2017 19:28
>
>
>
>
> > Robert, the DD looks ok to me. I actually stripped down one of my DD to
>
> > look just as yours and it deployed fine. Do you still have this file:
>
> > file:/var/folders/dt/vmntv00526g5s84b85rqwmm5qbfkqb/T/
>
> > UIMAdd2springOutput2528967577403356774.xml
>
> >
>
> > This is the transformed file which is fed to Spring factory. Can you
> share
>
> > this via pastbin?
>
> > Also which version of java are you using?
>
> >
>
> > Jerry
>
> >
>
> >
>
> > On Tue, Sep 19, 2017 at 11:45 AM, Jaroslaw Cwiklik 
>
> > wrote:
>
> >
>
> > > Hi Robert, any chance u can paste the deployment descriptor for a
> review?
>
> > > Were there any other errors/warnings before? The UIMA-AS deployment
>
> > > descriptor undergoes a transformation under the covers producing Spring
>
> > > Framework compatible file which is fed to Spring Factory for
> instantiating
>
> > > java code. In this
>
> > > last step it appears that there is an exception as you described.
> Wonder
>
> > > if there is other relevant info before this error
>
> > >
>
> > > Jerry
>
> > >
>
> > > On Tue, Sep 19, 2017 at 11:23 AM, r. r.  wrote:
>
> > >
>
> > >> Hello
>
> > >> I wrote an AE pipeline with uimaFit (and DKPro), which works fine in
> the
>
> > >> command line (mvn exec:java ...).
>
> > >> I successfully exported the xml descriptor via
>
> > >> AnalysisEngineDescription.toXML and want to use it with UIMA-as
>
> > >> (apache-uima-as-2.9.0).
>
> > >> My first attempt with deployAsyncService.sh failed with:
>
> > >>
>
> > >> "SEPM0004: When 'standalone' or 'doctype-system' is specified, the
>
> > >> document must be
>
> > >>   well-formed; but this document contains a top-level text node"
>
> > >>
>
> > >> but then I realised I need to supply an analysisEngineDeploymentDescri
> ption
>
> > >> to UIMA-as, so I amended this with a descriptor pointing to the one
>
> > >> generated by toXML().
>
> > >>
>
> > >> Now the error I'm getting is:
>
> > >>
>
> > >> "Exception encountered during context initialization - cancelling
> refresh
>
> > >> attempt: org.springframework.beans.factory.BeanCreationException:
> Error
>
> > >> creating bean with name 'primitive_ctlr_DKProStanfordQueue_1'
> defined in
>
> > >> URL [file:/var/folders/dt/vmntv00526g5s84b85rqwmm5qbfkqb/T/UIMAd
>
> > >> d2springOutput2528967577403356774.xml]: Bean instantiation via
>
> > >> constructor failed; nested exception is org.springframework.beans.
> BeanInstantiationException:
>
> > >> Failed to instantiate [org.apache.uima.aae.controlle
>
> > >> r.PrimitiveAnalysisEngineController_impl]: Constructor threw
> exception;
>
> > >> nested exception is java.lang.NullPointerException"
>
> > >>
>
> > >> Any idea what might be causing this?
>
> > >>
>
> > >> Thanks!
>
> > >>
>
> > >> Robert
>
> > >>
>
> > >>
>
> > >
>

Re: XMl generated by AnalysisEngineDescription.toXML not accepted by UIMA-as

[r. r.]

Thanks Jerry,
No, that file is gone after the command fails.
Do I have to setup the jars in use in the class path or is UIMA-as getting all 
the info to locate jars from the descriptor xmls?
Or maybe a way to see a yet more detailed error description by the deploy tool?

I'm running this with Java 8 on OSX Sierra:
java version "1.8.0_45"
Java(TM) SE Runtime Environment (build 1.8.0_45-b14)
Java HotSpot(TM) 64-Bit Server VM (build 25.45-b02, mixed mode)

Best regards
-Robert







 > Оригинално писмо 

 >От: Jaroslaw Cwiklik cwik...@apache.org

 >Относно: Re: XMl generated by AnalysisEngineDescription.toXML not accepted by 
 >UIMA-as

 >До: user@uima.apache.org

 >Изпратено на: 19.09.2017 19:28



 
> Robert, the DD looks ok to me. I actually stripped down one of my DD to
 
> look just as yours and it deployed fine. Do you still have this file:
 
> file:/var/folders/dt/vmntv00526g5s84b85rqwmm5qbfkqb/T/
 
> UIMAdd2springOutput2528967577403356774.xml
 
> 
 
> This is the transformed file which is fed to Spring factory. Can you share
 
> this via pastbin?
 
> Also which version of java are you using?
 
> 
 
> Jerry
 
> 
 
> 
 
> On Tue, Sep 19, 2017 at 11:45 AM, Jaroslaw Cwiklik 
 
> wrote:
 
> 
 
> > Hi Robert, any chance u can paste the deployment descriptor for a review?
 
> > Were there any other errors/warnings before? The UIMA-AS deployment
 
> > descriptor undergoes a transformation under the covers producing Spring
 
> > Framework compatible file which is fed to Spring Factory for instantiating
 
> > java code. In this
 
> > last step it appears that there is an exception as you described. Wonder
 
> > if there is other relevant info before this error
 
> >
 
> > Jerry
 
> >
 
> > On Tue, Sep 19, 2017 at 11:23 AM, r. r.  wrote:
 
> >
 
> >> Hello
 
> >> I wrote an AE pipeline with uimaFit (and DKPro), which works fine in the
 
> >> command line (mvn exec:java ...).
 
> >> I successfully exported the xml descriptor via
 
> >> AnalysisEngineDescription.toXML and want to use it with UIMA-as
 
> >> (apache-uima-as-2.9.0).
 
> >> My first attempt with deployAsyncService.sh failed with:
 
> >>
 
> >> "SEPM0004: When 'standalone' or 'doctype-system' is specified, the
 
> >> document must be
 
> >>   well-formed; but this document contains a top-level text node"
 
> >>
 
> >> but then I realised I need to supply an analysisEngineDeploymentDescription
 
> >> to UIMA-as, so I amended this with a descriptor pointing to the one
 
> >> generated by toXML().
 
> >>
 
> >> Now the error I'm getting is:
 
> >>
 
> >> "Exception encountered during context initialization - cancelling refresh
 
> >> attempt: org.springframework.beans.factory.BeanCreationException: Error
 
> >> creating bean with name 'primitive_ctlr_DKProStanfordQueue_1' defined in
 
> >> URL [file:/var/folders/dt/vmntv00526g5s84b85rqwmm5qbfkqb/T/UIMAd
 
> >> d2springOutput2528967577403356774.xml]: Bean instantiation via
 
> >> constructor failed; nested exception is 
> >> org.springframework.beans.BeanInstantiationException:
 
> >> Failed to instantiate [org.apache.uima.aae.controlle
 
> >> r.PrimitiveAnalysisEngineController_impl]: Constructor threw exception;
 
> >> nested exception is java.lang.NullPointerException"
 
> >>
 
> >> Any idea what might be causing this?
 
> >>
 
> >> Thanks!
 
> >>
 
> >> Robert
 
> >>
 
> >>
 
> >

Re: XMl generated by AnalysisEngineDescription.toXML not accepted by UIMA-as

[r. r.]

Hi 
I posted the xmls to pastebin.com, hope you're able to view them:

the deployment xml: https://pastebin.com/ELwr7VyU
the pipeline xml: https://pastebin.com/qjRQUhKL

There are no other error messages.
Basically the pipeline is one of DKPro's examples at 
dkpro-core-examples/stanfordcorecomponents-gpl.
The classpath might be the problem, but not sure how I can verify that as it 
works from the commandline (hmm...although it's through maven, which might know 
more about the jars' paths)

Thanks!
-Robert







 > Оригинално писмо 

 >От: Jaroslaw Cwiklik cwik...@apache.org

 >Относно: Re: XMl generated by AnalysisEngineDescription.toXML not accepted by 
 >UIMA-as

 >До: user@uima.apache.org

 >Изпратено на: 19.09.2017 18:45



 
> Hi Robert, any chance u can paste the deployment descriptor for a review?
 
> Were there any other errors/warnings before? The UIMA-AS deployment
 
> descriptor undergoes a transformation under the covers producing Spring
 
> Framework compatible file which is fed to Spring Factory for instantiating
 
> java code. In this
 
> last step it appears that there is an exception as you described. Wonder if
 
> there is other relevant info before this error
 
> 
 
> Jerry
 
> 
 
> On Tue, Sep 19, 2017 at 11:23 AM, r. r.  wrote:
 
> 
 
> > Hello
 
> > I wrote an AE pipeline with uimaFit (and DKPro), which works fine in the
 
> > command line (mvn exec:java ...).
 
> > I successfully exported the xml descriptor via 
> > AnalysisEngineDescription.toXML
 
> > and want to use it with UIMA-as (apache-uima-as-2.9.0).
 
> > My first attempt with deployAsyncService.sh failed with:
 
> >
 
> > "SEPM0004: When 'standalone' or 'doctype-system' is specified, the
 
> > document must be
 
> >   well-formed; but this document contains a top-level text node"
 
> >
 
> > but then I realised I need to supply an analysisEngineDeploymentDescription
 
> > to UIMA-as, so I amended this with a descriptor pointing to the one
 
> > generated by toXML().
 
> >
 
> > Now the error I'm getting is:
 
> >
 
> > "Exception encountered during context initialization - cancelling refresh
 
> > attempt: org.springframework.beans.factory.BeanCreationException: Error
 
> > creating bean with name 'primitive_ctlr_DKProStanfordQueue_1' defined in
 
> > URL [file:/var/folders/dt/vmntv00526g5s84b85rqwmm5qbfkqb/T/
 
> > UIMAdd2springOutput2528967577403356774.xml]: Bean instantiation via
 
> > constructor failed; nested exception is 
> > org.springframework.beans.BeanInstantiationException:
 
> > Failed to instantiate [org.apache.uima.aae.controller.
 
> > PrimitiveAnalysisEngineController_impl]: Constructor threw exception;
 
> > nested exception is java.lang.NullPointerException"
 
> >
 
> > Any idea what might be causing this?
 
> >
 
> > Thanks!
 
> >
 
> > Robert
 
> >
 
> >

Re: XMl generated by AnalysisEngineDescription.toXML not accepted by UIMA-as

[Jaroslaw Cwiklik]

Hi Robert, any chance u can paste the deployment descriptor for a review?
Were there any other errors/warnings before? The UIMA-AS deployment
descriptor undergoes a transformation under the covers producing Spring
Framework compatible file which is fed to Spring Factory for instantiating
java code. In this
last step it appears that there is an exception as you described. Wonder if
there is other relevant info before this error

Jerry

On Tue, Sep 19, 2017 at 11:23 AM, r. r.  wrote:

> Hello
> I wrote an AE pipeline with uimaFit (and DKPro), which works fine in the
> command line (mvn exec:java ...).
> I successfully exported the xml descriptor via AnalysisEngineDescription.toXML
> and want to use it with UIMA-as (apache-uima-as-2.9.0).
> My first attempt with deployAsyncService.sh failed with:
>
> "SEPM0004: When 'standalone' or 'doctype-system' is specified, the
> document must be
>   well-formed; but this document contains a top-level text node"
>
> but then I realised I need to supply an analysisEngineDeploymentDescription
> to UIMA-as, so I amended this with a descriptor pointing to the one
> generated by toXML().
>
> Now the error I'm getting is:
>
> "Exception encountered during context initialization - cancelling refresh
> attempt: org.springframework.beans.factory.BeanCreationException: Error
> creating bean with name 'primitive_ctlr_DKProStanfordQueue_1' defined in
> URL [file:/var/folders/dt/vmntv00526g5s84b85rqwmm5qbfkqb/T/
> UIMAdd2springOutput2528967577403356774.xml]: Bean instantiation via
> constructor failed; nested exception is 
> org.springframework.beans.BeanInstantiationException:
> Failed to instantiate [org.apache.uima.aae.controller.
> PrimitiveAnalysisEngineController_impl]: Constructor threw exception;
> nested exception is java.lang.NullPointerException"
>
> Any idea what might be causing this?
>
> Thanks!
>
> Robert
>
>