[Pw_forum] Antiferromagnetic configurations for A0.75B0.25C

2015-10-13 Thread bamidele ibrahim
Dear All, I am trying to construct an antiferromagnetic structure using a 
binary semiconductor with inclusion of a transition metal with this 
stoichiometry A0.75B0.25C. Where AC is the binary semiconductor and B is the 
transition metal as  it was discussed in this article  
http://dx.doi.org/10.1016/j.matchemphys.2015.07.010. Here, a (1x1x1) eight 
atoms supercell was constructed which translate to 3 atoms of A and 1 atom of B 
with 4 atoms of C with the following positions;
 B   0.00  0.00  0.00
A   0.00  0.50  0.50
A   0.50  0.00  0.50
A   0.50  0.50  0.00
C   0.25  0.25  0.25
C  -0.25 -0.25  0.25
C  -0.25  0.25 -0.25
C   0.25 -0.25 -0.25


Now, the question is if B takes positive  magnetization value, then which one 
of A and B will takes the negative magnetization value. 

I will appreciate an elaborate explanation on this.
ThanksIbrahim  
|   |
|   |  |   |   |   |   |   |
| Study of the Zn0.75M0.25Te (M = Fe, Co, Ni) diluted mag...Highlights • Ab 
initio calculations has been performed for Zn0.75M0.25Te (M = Fe, Co, Ni) 
alloys. • Equilibrium lattice constants were calculated for all three allo... |
|  |
| View on dx.doi.org | Preview by Yahoo |
|  |
|   |



|   |
|   |  |   |   |   |   |   |
| Study of the Zn0.75M0.25Te (M = Fe, Co, Ni) diluted mag...Highlights • Ab 
initio calculations has been performed for Zn0.75M0.25Te (M = Fe, Co, Ni) 
alloys. • Equilibrium lattice constants were calculated for all three allo... |
|  |
| View on www.sciencedirect.com | Preview by Yahoo |
|  |
|   |


 

Permanent Address
Adetunji Bamidele Ibrahim(PhD)
Department of physics,University of Agriculture,
Abeokuta, Ogun State,Nigeria.
Tel: +2348060270603
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"Lord give me a place to stand, and i will move the earth"
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[Pw_forum] Fwd: Basic Relax Calculation issues

2014-02-27 Thread bamidele ibrahim
Hi, 
You need to tell the code to print the force and the stress by setting
tstress=.true. tprnfor=.true. , under the control block. 


Regards, 

---
Present Address
Condensed Matter Sector,
International School for Advanced Studies(SISSA)
Via Bonomea, 265, 34136 Trieste,
Italy.
e-mail:badetunj at sissa.it

---
Permanent Address
Adetunji Bamidele Ibrahim(PhD Student)
Department of physics,University of Agriculture,
Abeokuta, Ogun State,Nigeria.
Tel: +2348060270603
---
"Lord give me a place to stand, and i will move the earth"




On Friday, February 28, 2014 6:08 AM, Zarah Baiyee  
wrote:
 
Hi All,?

I am a new user to Quantum Espresso, therefore this may be a bit trivial but I 
any help would be very welcome.?

I am attempting a relax calculation using espresso version 5.0.2, for the 
geometry optimisation of a perovskite structure. For the input below, the 
calculation runs, however does not compute any forces and convergence without 
geometry optimisation to the original structure, with 0 bfgs steps. I am able 
to perform an expected relaxation if alter the initial atomic positions to 
asymmetric: (i.e.) ?an oxygen molecule from: ?O (0.500 ?0.5 ?0.0) to O(0.499 
0.5 0.0).?

Please may someone shed some light on to why this is the case, and if there is 
anything wrong with my input. ?

Thanks

Zarah
Zbaiyee at gmail.com


? calculation ?= "relax",
? prefix ? ? ? = "CO",
? pseudo_dir ? = "/Users/zarahbaiyee/espresso-5.0.2/pseudo",
? outdir ? ? ? = "/Users/zarahbaiyee/tmp",
? forc_conv_thr = 1.0D-5
/

? ibrav ? ? = 0,
? nat ? ? ? = 5,
? ntyp ? ? ?= 3,
? ecutwfc ? = 60,
? ecutrho ? = 420,
/

? conv_thr ? ?= 1.D-7,
? mixing_beta = 0.7D0,
? electron_maxstep = 400
/

/
CELL_PARAMETERS bohr
?7.60 ?0.0 ?0.0
?0.0 ?7.60 ?0.0
?0.0 ?0.0 ?7.60
ATOMIC_SPECIES
?Ba ?137.32 Ba.pbe-mt_fhi.UPF
?Fe ?55.84 Fe.pbe-mt_fhi.UPF
?O ? 15.99 O.pbe-kjpaw.UPF
ATOMIC_POSITIONS {crystal}
Ba ?0.000 ?0.0 ?0.0 ?0 0 0?
Fe ?0.500 ?0.5 ?0.5
O ? 0.000 ?0.5 ?0.5
O ? 0.500 ?0.0 ?0.5
O ? 0.500 ?0.5 ?0.0

K_POINTS {automatic}
9 9 9 0 0 0

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[Pw_forum] restarts

2013-04-30 Thread bamidele ibrahim


?Hi Vijaya,

Check this;? 
http://www.quantum-espresso.org/wp-content/uploads/Doc/INPUT_PW.html#id1486014.


---
Present Address
Condensed Matter Sector,
International School for Advanced Studies(SISSA)
Via Bonomea, 265, 34136 Trieste,
Italy.
e-mail:badetunj at sissa.it

---
Permanent Address
Adetunji Bamidele Ibrahim(PhD Student)
Department of physics,University of Agriculture,
Abeokuta, Ogun State,Nigeria.
Tel: +2348060270603
---
"Give me a place to stand, and i will move the earth"




 From: vijaya subramanian 
To: "Pw_forum at pwscf.org"  
Sent: Wednesday, May 1, 2013 5:38 AM
Subject: [Pw_forum] restarts
 


 
Hi
I recently saw a post about restarts. I am not sure where to find information 
about
restarting a job that did not finish because of time constraints on the machine 
I am using-is there a way
to do that for scf calculations? 
Thanks
Vijaya

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[Pw_forum] Question regarding calculation for elastic constants, shear modulus and young modulus

2013-01-18 Thread bamidele ibrahim
Dear Tram,
?To do elastic constant calculation, there two ways to it. In the first 
approach, you can do stress-strain calculation using the concept in the work of 
Richard Martin in this article OH Nielsen, RM Martin - Physical Review B, 1985 
or energy-strain calculation using the approach in this article 
http://iopscience.iop.org/0953-8984/15/30/312;jsessionid=2D0C2CFEF512D7EA6CF9879C4A26EC42.c1.
 I hope this information will help you in your calculation.


?
---
Adetunji Bamidele Ibrahim(PhD Student)
Department of physics,University of Agriculture,
Abeokuta, Ogun State,Nigeria.
---




 From: Tram Bui 
To: PWSCF Forum  
Sent: Friday, January 18, 2013 11:09 PM
Subject: Re: [Pw_forum] Question regarding calculation for elastic constants, 
shear modulus and young modulus
 

Dear QE Users and Ali,
? ? ? ?Unfortunately, I found most of the link were broken and I couldn't find 
much information. Would you give me sue other source that can be use for 
calculation of elastic constants, shear and found modulus using QE code? and is 
it possible to obtain elastic constants at different Temp. in QE?

Regards,
Tram


On Fri, Jan 18, 2013 at 2:35 PM, Tram Bui  wrote:

Dear Everyone,
>? ? ?I have a follow up question from my last post that would it be possible 
>to do calculation using QE codes to obtain elastic constants at different 
>temperature?
>
>
>Regards,
>Tram ? ? ?
>
>
>
>On Fri, Jan 18, 2013 at 2:26 PM, Tram Bui  wrote:
>
>Thank you very much, Ali
>>Tram
>>
>>
>>
>>On Fri, Jan 18, 2013 at 2:20 PM, Ali KACHMAR  
>>wrote:
>>
>>Dear Tram,
>>>
>>>Please find below two posts are useful to what are you willing to do
>>>
>>>http://www.democritos.it/pipermail/pw_forum/2012-May/024015.html
>>>
>>>http://www.democritos.it/pipermail/pw_forum/2011-November/022483.html
>>>
>>>
>>>Ali
>>>
>>>
>>>
>>>
>>>Date: Fri, 18 Jan 2013 13:47:50 -0700
>>>From: trambui at u.boisestate.edu
>>>To: pw_forum at pwscf.org
>>>Subject: [Pw_forum] Question regarding calculation for elastic constants, 
>>>shear modulus and young modulus
>>>
>>>
>>>Dear all QE Users,
>>>? ? Would you give me some insight information on how to set up the input 
>>>files in order to calculate for the following material properties? elastic 
>>>constant, shear modulus (G) and young modulus (E). If there is an tutorial 
>>>on this, would you please direct me to it?
>>>
>>>
>>>Best regards,
>>>?Tram Bui
>>>
>>>M.S. Materials Science & Engineering
>>>trambui at u.boisestate.edu
>>>
>>>___
Pw_forum mailing list Pw_forum at pwscf.org 
http://pwscf.org/mailman/listinfo/pw_forum
>>>___
>>>Pw_forum mailing list
>>>Pw_forum at pwscf.org
>>>http://pwscf.org/mailman/listinfo/pw_forum
>>>
>>
>>
>>
>>-- 
>>
>>Tram Bui
>>
>>M.S. Materials Science & Engineering
>>trambui at u.boisestate.edu
>>
>
>
>
>-- 
>Tram Bui
>
>M.S. Materials Science & Engineering
>trambui at u.boisestate.edu
>


-- 
Tram Bui

M.S. Materials Science & Engineering
trambui at u.boisestate.edu

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[Pw_forum] Bamidele Ibrahim Adetunji wants to share new pictures with you

2012-10-26 Thread Bamidele Ibrahim Adetunji
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[Pw_forum] assignment of spin label to electronic band

2012-10-12 Thread bamidele ibrahim
Dear Pal,
?It is possible. What you need to do is to set the filag 

spin_component=1or 2. in the bands extraction. 

1= up amd 2=down spin respectively.

Hope this help.


?
---
Adetunji Bamidele Ibrahim(PhD Student)
Department of physics,University of Agriculture,
Abeokuta, Ogun State,Nigeria.
---




 From: koushik pal 
To: pw_forum at pwscf.org 
Sent: Friday, October 12, 2012 12:46 PM
Subject: [Pw_forum] assignment of spin label to electronic band
 

Dear PW users,
?Is it possible to assign spin label to the electronic bands? That means, can 
we tell which band is associated with up spin and which one due to down spin? 
If possible, can somebody please tell me how to do that?
?P.S.- I'm doing fully relativistic calculation with spin-orbit coupling.

Thanks in advance,
Koushik Pal
MS student
JNCASR, Bangalore, India

-- 

Koushik Pal
Materials Theory Group
Int PhD student
JNCASR
CPMU



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[Pw_forum] QE-5.0.1

2012-09-24 Thread bamidele ibrahim
Here it is 
http://qe-forge.org/gf/project/q-e/frs/?action=FrsReleaseBrowse_package_id=18
but next time unvail your identity in this community.

?
---
Adetunji Bamidele Ibrahim(PhD Student)
Department of physics,University of Agriculture,
Abeokuta, Ogun State,Nigeria.
---




 From: Elie M 
To: "pw_forum at pwscf.org"  
Sent: Monday, September 24, 2012 6:14 PM
Subject: [Pw_forum] QE-5.0.1
 

 
Dear All,

Can anyone give me the link to where I can download the Quantum-espresso-5.0.01 
version? I could not find it on the quantum espresso website



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[Pw_forum] (no subject)

2012-09-20 Thread bamidele ibrahim
Dear Taoufek,
Try and view your structure with xcrysden with this input file. you will notice 
that the structure is not perfect enough. Thereafter, set your ibrav=1 and view 
again. With this, you will noticed that the actual structure you are expected 
to used is what you will see. 


Hope this help.

?
---
Adetunji Bamidele Ibrahim(PhD Student)
Department of physics,University of Agriculture,
Abeokuta, Ogun State,Nigeria.
---




 From: Sakhrawi Taoufek 
To: "Pw_forum at pwscf.org"  
Sent: Thursday, September 20, 2012 4:49 PM
Subject: [Pw_forum] (no subject)
 

i'am trying to estimate celldm(1) for the compound FeRh, the problem is thatI 
always find a value that doubles the expected value


# self-consistent calculation
cat > ferh_fm.scf.in << EOF
?
??? prefix='FeRh_fm',
???
 pseudo_dir = '$pseudo_dir/',
??? outdir='$outdir/'
?/
?
??? ibrav= 3,
??? celldm(1) =$alat,
??? nat=? 2,
??? ntyp= 2,
??? ecutwfc = 30,
??? nbnd = 16,
??? occupations='smearing',
??? smearing='mv',
??? degauss=0.022,
? /
? 
mixing_mode = 'plain' ,
mixing_beta = 0.4,
diagonalization = 'david' ,
conv_thr = 1.0e-7,
electron_maxstep=1000,
?/
ATOMIC_SPECIES
?Fe 55.85??? Fe.pz-nd-rrkjus.UPF
?Rh 102.91?? Rh.pz-rrkjus.UPF
ATOMIC_POSITIONS {crystal}
?? Fe? 0.? 0.? 0.
?? Rh? 0.5000? 0.5000? 0.5000
K_POINTS
 {automatic}
?? 12 12 12 1 1 1
EOF

$espresso_dir/bin/pw.x < ferh_fm.scf.in > ferh_fm.scf.out

grep -e 'lattice parameter' -e ! ferh_fm.scf.out | \
? awk '/lattice/{alat=$(NF-1)}/!/{print alat, $(NF-1)}' >> 
ferh_fm.etot_vs_alat




Sakhraoui TaoufikUnit? de Recherche Physique des Solides
D?partement de Physique, Facult? des Science de
 Monastir,
Avenue de l'Environnement 5019, Monastir
 Tunisie.
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[Pw_forum] pw.x

2012-09-20 Thread bamidele ibrahim
Dear Taoufek,
What type of exchange correlation are you using?

?
---
Adetunji Bamidele Ibrahim(PhD Student)
Department of physics,University of Agriculture,
Abeokuta, Ogun State,Nigeria.
---




 From: Sakhrawi Taoufek 
To: "Pw_forum at pwscf.org"  
Sent: Thursday, September 20, 2012 10:45 AM
Subject: [Pw_forum] pw.x
 

I made ??a pw.xcalculation for the compound FeRh to estimate the value of a, 
the problem is thatI always find a value that doubles the expected value
Do you have any idea what to do
thank you
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[Pw_forum] doubts (problems?) in DOS calculation

2012-09-19 Thread bamidele ibrahim
Dear Tiana,
Nobody can figure out your problem if you did not provide your input file. For 
meaning assistance in this forum, always provide your input file.

?
---
Adetunji Bamidele Ibrahim(PhD Student)
Department of physics,University of Agriculture,
Abeokuta, Ogun State,Nigeria.
---




 From: Davide Tiana 
To: pw-mailing_list  
Sent: Wednesday, September 19, 2012 1:29 PM
Subject: [Pw_forum] doubts (problems?) in DOS calculation
 
Dear all,
I am trying to calculate DOS and projected DOS for a semiconducting 1D? 
hybrid (i.e. metal-organic) polymer. The band gap I found is about? 
0.4. However when I try to calculate DOS I don't find 0 contribution? 
at the Fermi level nor a band gap around it. I am in doubt and I think? 
something wrong happened (namely I made some errors). How can I check? 
that everything is fine and-or explain this behaviour?

By the way here what I've done:

pw optimisation
pw band calculation
pw nscf calculation
dos dos calculation (at first instance I did't make but finding? 
something "weird" in the total projwfc I run it to check)
projwfc projected dos calc

thanks a lot

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[Pw_forum] How to make use of PSlibrary?

2012-09-15 Thread bamidele ibrahim
Dear Yue,
What exactly do you want to do? Do you want to download pslibrary 
pseudopotentiasl? if yes, then follow this link 
''http://qe-forge.org/gf/project/pslibrary/frs/''.
Hope this help.

?
---
Adetunji Bamidele Ibrahim(PhD Student)
Department of physics,University of Agriculture,
Abeokuta, Ogun State,Nigeria.
---




 From: Yue-Wen Fang 
To: PWSCF Forum  
Sent: Saturday, September 15, 2012 1:58 PM
Subject: [Pw_forum] How to make use of PSlibrary?
 

Dear all?

I heard that we can download pseudopotential andshare my pseudopotential with 
others in PSlibrary, but I cannot find the steps to do this work at PSlibrary 
website:? http://qe-forge.org/projects/pslibrary?

Does someone know?

Best Regards!
-- 

Yue-Wen Fang



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[Pw_forum] question about pp for Raman calculation

2012-09-10 Thread bamidele ibrahim
Dear James, 

You can check the pslibrary pp here 
.'http://qe-forge.org/gf/project/pslibrary/frs/'

?
---
Adetunji Bamidele Ibrahim(PhD Student)
Department of physics,University of Agriculture,
Abeokuta, Ogun State,Nigeria.
---




 From: James Mao 
To: Pw_forum at pwscf.org 
Sent: Monday, September 10, 2012 5:17 PM
Subject: [Pw_forum] question about pp for Raman calculation
 

Hi dear all, 
?
I am new to qe, as well as computations in solid states. I am trying to 
calculate a Raman spectrum 
for a crystal, and have a question: for pp used in a photon calculation, does 
the result still make 
sense if the different atoms' pp have different source? Namely, different xc 
func (pz, vwn, ..., but 
same xc approx such as LDA), or different psp class (mt, hbs, vbc...). 
?
The reason for asking this question is that it seems photon code can only 
calculate Raman for LDA pp, 
and they cannot be relativistic, ultrasoft or paw. So the choice is really 
limited. For example, I cannot 
find an available pp for F atom to perform the calculation, and no suitable pp 
from same source for C, 
O, N. I think the correct way probably is to learn how to generate pp by 
myself, but it might take a while 
to learn and I would like to set up the calculation first. I have used pz-vbc 
for C and pz-mt for O, but 
cannot find any available LDA pp for F which is not ultrasoft and paw. 
?
Any help will be greatly appreciated!
?
Best,
J. Mao
---
postdoc, department of chemistry, university of pittsburgh
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[Pw_forum] equilibrium lattice constant of magnetite

2012-08-06 Thread bamidele ibrahim
Dear Abolore,
Read this article it contains all the atomic positions for the compound. You 
need to know that for this compound Z=8.

http://www.springerlink.com/content/p27870432mt31374/fulltext.pdf

?
Adetunji Bamidele Ibrahim(PhD Student)
Department of physics,University of Agriculture,
Abeokuta, Ogun State,Nigeria.



 From: Abolore Musari 
To: PWSCF Forum  
Sent: Monday, August 6, 2012 4:42 PM
Subject: Re: [Pw_forum] equilibrium lattice constant of magnetite
 

Thanks so much Jia
But Sir the atomic positions in the input is for 3 atoms, should l leave the 
atomic position and change the number of atom or my atomic position is wrong??
thanks
Musari A. A
UNAAB Nigeria


On Mon, Aug 6, 2012 at 3:34 PM, jia chen  wrote:

Dear Abolore Musari,
>
>
>I guess the number of atoms should be 14, instead of 3.
>
>
>Regards
>Jia
>
>
>On Mon, Aug 6, 2012 at 10:24 AM, Abolore Musari  wrote:
>
>Dear QE users
>>Sir, I am try to find the lattice constant of magnetite (Fe3O4) which is a 
>>spinel ferrimagnetic material. The expt lattice constant was 15.87 and I have 
>>been trying to find the equilibrium lattice constant (celldm(1)) between 
>>15.80 - 16.00 and all i get is a straight line graph instead of the usual 
>>exponential curve graph. I have tried all l could most esp with 
>>starting_magnetization but the results are the same. My input is pasted below 
>>pls help me to get the appropriate graph.
>>The kind of the graph I got is attached.
>>Thanks
>>
>>
>>??? calculation = 'scf',
>>??? restart_mode ='from_scratch',
>>??? prefix = 'Fe3O4',
>>??? pseudo_dir = '/home/abolore/Programs/Pseudos/',
>>??? outdir = './tmp/'
>>?/
>>?
>>??? ibrav = 2, 
>>??? celldm(1)= $15.80-16.00,
>>??? nat = 3, 
>>??? ntyp = 3,
>>??? ecutwfc = 40,
>>??? ecutrho = 400,
>>??? starting_magnetization(1) = 0.7,
>>??? starting_magnetization(2) = -0.5,
>>??? starting_magnetization(3) = 0.0,
>>??? nspin = 2,
>>??? occupations='smearing',
>>??? smearing='gaussian',
>>??? degauss = 0.05,
>>?/
>>?
>>?? diagonalization = 'david',
>>?? mixing_mode = 'plain',
>>?? mixing_beta = 0.7
>>?/
>>ATOMIC_SPECIES
>>??? Fe1 55.845?? Fe.pz-nd-rrkjus.UPF
>>??? Fe2??? ?55.845??? ? Fe.pz-nd-rrkjus.UPF
>> O? 16.000??? ? O.pz-rrkjus.UPF
>>
>>ATOMIC_POSITIONS
>>Fe1 0.125? 0.125? 0.125? 
>>Fe2 0.500? 0.500? 0.500
>>O??? 0.2548 0.2548 0.2548
>>?
>>K_POINTS (automatic)
>>? 8 8 8 1 1 1
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>___
>>Pw_forum mailing list
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>>http://www.democritos.it/mailman/listinfo/pw_forum
>>
>>
>
>
>
>-- 
>Jia Chen
>
>
>
>___
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>http://www.democritos.it/mailman/listinfo/pw_forum
>
>

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[Pw_forum] scf calculation crashed for "diagonalization (ZHEGV*) failed".

2012-07-18 Thread bamidele ibrahim
Dear GAO,
? Thanks for the explanation, i have tried it , it produced the same result.

?
Adetunji Bamidele Ibrahim(PhD Student)
Department of physics,University of Agriculture,
Abeokuta, Ogun State,Nigeria.



 From: GAO Zhe 
To: PWSCF Forum  
Sent: Wednesday, July 18, 2012 10:30 AM
Subject: Re: [Pw_forum] scf calculation crashed for "diagonalization (ZHEGV*) 
failed".
 

If there is no model/structure problem, then you can try to set 
diagonalization='cg' in namelist, although this method will decrease 
the calculation speed due to the poor parallel performance.


--
GAO Zhe
CMC Lab, Materials Science & Engineering Department,
Seoul National University, South Korea
?
At 2012-07-18 13:30:15,"bamidele?ibrahim"? wrote:

Dear all,
>? I am running scf calculation? and relax with the input file below: 
>
>? calculation = 'relax',
>? prefix='MgSe'
>? pseudo_dir='/home/adetunji/espresso-4.3/pslibrary.0.2.5/pz/PSEUDOPOTENTIALS',
>? outdir='./',
>/
>
>? ibrav=0,
>? nat=8, 
>? celldm(1)= 11.32, 
>? ntyp=2, 
>? ecutwfc = 50.0,
>/
>
>?mixing_beta = 0.9
>?conv_thr = 1.0d-9
>/
>
>ion_dynamics ='bfgs'
>/
>ATOMIC_SPECIES
>Mg 24.305? Mg.pz-n-kjpaw.UPF
>Se 78.963? Se.pz-n-kjpaw.UPF
>CELL_PARAMETERS 
>?? 0.000 0.49 0.49
>?? 0.49? 0.000 0.49 
>?? 0.49 0.49 0.000
>
>ATOMIC_POSITIONS
>Mg 0.?
 0.?? 0.
>Mg 0.? 0.5000?? 0.5000
>Mg 0.5000? 0.?? 0.5000
>Mg 0.5000? 0.5000?? 0.
>Se 0.2500? 0.2500?? 0.2500
>Se 0.7500? 0.7500?? 0.2500
>Se 0.7500? 0.2500?? 0.7500
>Se 0.2500? 0.7500?? 0.7500
>
>K_POINTS (automatic)
>6 6 6? 1 1 1
>
>In both cases, it crashes and produces this error:
>
>
> from cdiaghg : error #??? 42
> diagonalization (ZHEGV*) failed
>?%%%%%%
>Can anybody in the house tell me what i have done
 wrong.
>? 
>
>
>Adetunji Bamidele Ibrahim(PhD Student)
>Department of physics,University of Agriculture,
>Abeokuta, Ogun State,Nigeria.


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[Pw_forum] Clarification on how to compute elastic constants

2012-07-18 Thread bamidele ibrahim
?Dear all,
Please, i need some clarification on the following? issues on how to calculate 
elastic constants, 
1. When performing the calculation, is it correct to set 'calculation=scf' or 
'relax'? For either of the two cases, can? anybody in the house give me an 
explanation on it.
2. since we need to set ibrav=0, and define explicitly the primitive vectors 
for any crystal we are dealing with then, is it necessary to define all the 
atoms in the primitive cell of the crystal explicitly?? for example ZnSe which 
has 8 atomic positions if ibrav=0 and this in the cubic B3 phase. 
3. Do i need to use cell dynamics or ion dynamics for the optimization of the 
cell?

I will be delighted if anybody can give me an explanation on this issue.

Thanks

?
Adetunji Bamidele Ibrahim(PhD Student)
Department of physics,University of Agriculture,
Abeokuta, Ogun State,Nigeria.
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[Pw_forum] scf calculation crashed for "diagonalization (ZHEGV*) failed".

2012-07-17 Thread bamidele ibrahim
Dear all,
? I am running scf calculation? and relax with the input file below: 


? calculation = 'relax',
? prefix='MgSe'
? pseudo_dir='/home/adetunji/espresso-4.3/pslibrary.0.2.5/pz/PSEUDOPOTENTIALS',
? outdir='./',
/

? ibrav=0,
? nat=8, 
? celldm(1)= 11.32, 
? ntyp=2, 
? ecutwfc = 50.0,
/

?mixing_beta = 0.9
?conv_thr = 1.0d-9
/

ion_dynamics ='bfgs'
/
ATOMIC_SPECIES
Mg 24.305? Mg.pz-n-kjpaw.UPF
Se 78.963? Se.pz-n-kjpaw.UPF
CELL_PARAMETERS 
?? 0.000 0.49 0.49
?? 0.49? 0.000 0.49 
?? 0.49 0.49 0.000

ATOMIC_POSITIONS
Mg 0.? 0.?? 0.
Mg 0.? 0.5000?? 0.5000
Mg 0.5000? 0.?? 0.5000
Mg 0.5000? 0.5000?? 0.
Se 0.2500? 0.2500?? 0.2500
Se 0.7500? 0.7500?? 0.2500
Se 0.7500? 0.2500?? 0.7500
Se 0.2500? 0.7500?? 0.7500

K_POINTS (automatic)
6 6 6? 1 1 1

In both cases, it crashes and produces this error:


 from cdiaghg : error #??? 42
 diagonalization (ZHEGV*) failed
?%%
Can anybody in the house tell me what i have done wrong.
? 


Adetunji Bamidele Ibrahim(PhD Student)
Department of physics,University of Agriculture,
Abeokuta, Ogun State,Nigeria.
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[Pw_forum] help on convergence

2012-04-08 Thread bamidele ibrahim
Dear all,
?I am working on TiO2 and running scf for this compound, i have not been able 
to get a convergence. I will be delighted if i can get help on this from any 
expert. I have with this mail the input file for the scf. 

?
Adetunji Bamidele Ibrahim(PhD Student)
Department of physics,University of Agriculture,
Abeokuta, Ogun State,Nigeria.
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[Pw_forum] Atomic position for Ni-Al alloy with BCC structure

2012-01-07 Thread bamidele ibrahim
Dear Paul, 

? I think one of your pseudopotential need to be change for conformity. I try 
to run pw.x for your input file
and noticed that there is overlapping between the two atoms. This the program 
complained. It is as 

a result of this that you are only seeing one atom in the matrix. ? 

?
Adetunji Bamidele Ibrahim
Department of physics,University of Agriculture,
Abeokuta, Ogun State,Nigeria.



 From: Paul Funso 
To: "pw_forum at pwscf.org"  
Sent: Saturday, January 7, 2012 8:47 PM
Subject: [Pw_forum] Atomic position for Ni-Al alloy with BCC structure
 

Dear All,
?I am working on BCC NI-Al alloy, which has a CsCl structure with ibrav = 3 and 
atomic position 0 0 0 for Ni atom and? 0.5 0.5 0.5 for Al atom. I am using 
xcrysden to view the structure, I only see Ni atoms and with no Al atom in the 
matrix. Can anybody please tell me where I am going wrong. I have my input file 
below.

?
??? calculation='scf'
??? restart_mode='from_scratch',
??? pseudo_dir = '/home/adebambo/espresso-4.2.1/pseudo/',
??? outdir='./'
??? prefix='Ni-Al'
??? tstress = .true.
??? tprnfor = .true.
?/
?
??? ibrav = 3, celldm(1) =5.44 nat= 2, ntyp= 2,
??? ecutwfc = 15,
 ecutrho = 300.0
??? occupations='smearing', smearing='marzari-vanderbilt', degauss=0.05
?/
?
??? diagonalization='cg'
??? mixing_beta = 0.7
?/
ATOMIC_SPECIES
?Ni 58.69? Ni.pz-nd-rrkjus.UPF
?Al 26.98? Al.pz-vbc.UPF

ATOMIC_POSITIONS
?Ni? 0.00? 0.00? 0.00
?Al? 0.50? 0.50? 0.50
K_POINTS (automatic)
?4 4 4? 0 0 0


Thanks.

Adebambo Paul Olufunso? PhD student,
Department of Physics,
University of Agriculture Abeokuta,
Nigeria.

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[Pw_forum] how to construct supercell for an fcc crystal compound

2011-12-15 Thread bamidele ibrahim
Dear all,
?? I have been working on series of zinc blende semiconductors materials in 
recent time. 

I am now interested in doping some of the compound with differents element in 
other to alter
the crystal structures(i.e introducing impurities). I know i need to build a 
supercell for my compound but, 

i don't understand how to do it. I went through all the examples files, but 
none was able to give the information. I will
be delighted if you can all come to my aid. for example ZnSe with atomic 
position of (0,0,0) and (0.25,0.25,0.25). 

How do i build a supercell for this compound? 

?
Adetunji Bamidele Ibrahim
Department of physics,University of Agriculture,
Abeokuta, Ogun State,Nigeria.
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[Pw_forum] help on atomic position

2011-11-16 Thread bamidele ibrahim
Dear all, 

? I am working on Li15Si4 compound and i could not get the correct atomic 
positions for each of the 

elements in this compound. I will be delighted if anybody can give me the 
atomic positions for this compound.

?
Adetunji Bamidele Ibrahim
Department of physics,University of Agriculture,
Abeokuta, Ogun State,Nigeria.
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[Pw_forum] Fermi energy from scf calculation

2011-10-27 Thread bamidele ibrahim
Dear Tram,
? For you to get fermi energy from your scf calculation, you need to set you 
'occupation=smearing', and they
the type of smearing you want to use follow with 'degauss value'. With all this 
in place you will get the fermi?
energy.

Regards,

?
Adetunji Bamidele Ibrahim
Department of physics,University of Agriculture,
Abeokuta, Ogun State,Nigeria.



From: Tram Bui <tram...@u.boisestate.edu>
To: PWSCF Forum 
Sent: Thursday, October 27, 2011 11:05 PM
Subject: [Pw_forum] Fermi energy from scf calculation


Dear Everyone,
 I have told that the scf calculation would give out the Fermi energy, 
Ef,?of?a material?system. I have done some nscf, relax and vc-relax 
calculations for the same material?as well. I was able to obtain the Ef on 
other calculation but not on the scf calculation. would you give me some 
information on why it was the case?

Regards,

Tram Bui

M.S. Materials Science & Engineering
trambui at u.boisestate.edu


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[Pw_forum] Doping semiconductor

2011-09-20 Thread bamidele ibrahim
Dear all,
??? I am interested in doping some semiconductor with some metals. But, i don't 
understand how
to prepared the input file. I have run series of scf,nscf and? even plotted the 
band structure, dos and
?charge density of most of the semiconductor am interested in. But now, i want 
to investigate the effect
of doing on the semiconductor of interest. I will be delighted if anybody with 
an idea on how to do this can 

share his or her experience on this with me.
Thanks

?
Adetunji Bamidele Ibrahim
Department of physics,University of Agriculture,
Abeokuta, Ogun State,Nigeria.
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[Pw_forum] xspectra calculation error

2011-09-04 Thread bamidele ibrahim
Dear all,

?? I am trying to run xspectra calculation on MgSe. Knowing that there is no 
gipaw pseudopotential for both contributing element on
? the pwscf-pseudo page, i tried to generate one for both Mg and Se. After 
running scf with this pseudo, i proceed to running the
? xspectra with xspectra.x but to my surprise, it keeps given this error ;

? ?? from allocate_fft : error # 1
 the nr"s are too small!
Please, can anybody help me out with this?

?
Adetunji Bamidele Ibrahim
Department of physics,University of Agriculture,
Abeokuta, Ogun State,Nigeria.
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[Pw_forum] QHA compilation error

2011-08-02 Thread bamidele ibrahim
Dear all,

? I am trying to compile QHA with QE 4.3 version. After run ./Compile, it's 
gives this error;
ifort -O3? -c? tetra.f
make: ifort: Command not found
make: *** [tetra.o] Error 127
ifort -O3?? -c? Debye.f90
make: ifort: Command not found
make: *** [Debye.o] Error 127
ifort -FR -c? Mean_square_displacement.f90
make: ifort: Command not found
make: *** [Mean_square_displacement.o] Error 127
ln: creating symbolic link `tetra.x': File exists
ln: creating symbolic link `phonon_dos.x': File exists
ln: creating symbolic link `Debye.x': File exists
ln: creating symbolic link `Atom_projected_properties.x': File exists
ln: creating symbolic link `F_QHA.x': File exists
ln: creating symbolic link `Ghost_DOS.x': File exists
ln: creating symbolic link `Partial_phonon_DOS.x': File exists
ln: creating symbolic link `Mean_square_displacement.x': File exists
ln: creating symbolic link `atom_info.x': File exists


Please, kindly help me out on this.

?
Adetunji Bamidele Ibrahim
Department of physics,University of Agriculture,
Abeokuta, Ogun State,Nigeria.
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[Pw_forum] can pwscf calculate temperature dependence of the vibrational contribution to the free energy?

2011-07-16 Thread bamidele ibrahim

Dear all,

? I am interested in studying the effect of temperature on the vibrational 
contribution to the free energy, enthalpy, heat capacity. So, i don't know if 
the pwscf can do this. I will appreciate an idea on how to do this if it is 
possible to do it will pwscf.

Thanks,
Ibrahim

Adetunji Bamidele Ibrahim

Department of physics,University of Agriculture,

Abeokuta, Ogun State,Nigeria.
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[Pw_forum] how to extract data from phonon calculation to plot phonon frequency dispersion curve

2011-07-15 Thread bamidele ibrahim
Dear Prof. Eyvaz,
? Thanks for that information. I have obtain the necessary files but i don't 
understand how to use the PlotPhon. The PlotPhon is not part of the executable 
in the /bin. I tried to used plotband.x but i was asked to input the value of 
Efermi, which i have not calculated in my calculation. I will be very happy if 
you can enlightened me more on this.

Thanks,
Ibrahim? ? 

Adetunji Bamidele Ibrahim

Department of physics,University of Agriculture,

Abeokuta, Ogun State,Nigeria.

--- On Thu, 7/14/11, Eyvaz Isaev  wrote:

From: Eyvaz Isaev <eyvaz_is...@yahoo.com>
Subject: Re: [Pw_forum] how to extract data from phonon calculation to plot 
phonon frequency dispersion curve
To: "PWSCF Forum" 
Date: Thursday, July 14, 2011, 7:11 AM

Hi,
In order to plot phonon dispersion relations you need interatomic force 
constants matrix, *.fc file. To get it you have to calculate dynamical matrices 
for a given number of q-points defined via (nq1 x nq2 x nq3) mesh, then perform 
FFT to get F(R) - the *.fc file (using q2r.x). Then you can use PlotPhon 
utility to plot phonon dispersion relations. 

Best regards,Eyvaz.? 
?---
Prof. Eyvaz Isaev, 
Department of Physics, Chemistry, and Biology (IFM), Linkoping University, 
Sweden 
Theoretical Physics Department, Moscow State Institute of Steel & Alloys, 
Russia,
 
isaev at ifm.liu.se, eyvaz_isaev at yahoo.com
From: bamidele ibrahim <bamideleibra...@yahoo.com>
To: pw_forum at pwscf.org
Sent: Thursday, July 14, 2011 5:44 PM
Subject: [Pw_forum] how to extract data from phonon calculation to plot phonon 
frequency dispersion curve

Dear all,
?I want to plot phonon dispersion frequency curve. i perform scf and phonon 
calculation at gamma point(0,0,0), where i have an output
 file .dynG. Inside this file, there? are some data which i think is to be use 
to plot the phonon frequency dispersion curve. but to extract these data is a 
problem. Can anybody help me out? Your assistance will be appreciated.
thanks,
ibrahim 

Adetunji Bamidele Ibrahim

Department of physics,University of Agriculture,

Abeokuta, Ogun State,Nigeria.
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[Pw_forum] how to extract data from phonon calculation to plot phonon frequency dispersion curve

2011-07-14 Thread bamidele ibrahim
Dear all,
?I want to plot phonon dispersion frequency curve. i perform scf and phonon 
calculation at gamma point(0,0,0), where i have an output file .dynG. Inside 
this file, there? are some data which i think is to be use to plot the phonon 
frequency dispersion curve. but to extract these data is a problem. Can anybody 
help me out? Your assistance will be appreciated.
thanks,
ibrahim 

Adetunji Bamidele Ibrahim

Department of physics,University of Agriculture,

Abeokuta, Ogun State,Nigeria.
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[Pw_forum] I need norm conserving pseudopotetial for Zinc that can work with pwscf

2011-07-10 Thread bamidele ibrahim
Dear Liu,
? I have downloaded the .fhi file from abinit pseudopotential site, and i used 
the command given by you as follows;

?? ./fhi2upf.x /home/adetunji/Desktop/30-Zn.LDA.fhi 

after the command, here is the result of the process.
read_fhi: assuming abinit format
Pseudopotential without NLCC successfully read
Wavefunction # 1: label, occupancy > 

please, what is the next step.


Adetunji Bamidele Ibrahim

Department of physics,University of Agriculture,

Abeokuta, Ogun State,Nigeria.

--- On Sat, 7/9/11, gbliu  wrote:

From: gbliu <goodluck_1...@163.com>
Subject: Re: [Pw_forum] I need norm conserving pseudopotetial for Zinc that can 
work with pwscf
To: "PWSCF Forum" 
Date: Saturday, July 9, 2011, 6:32 AM



  


  

You can use pp file of ABINIT, then use upftools/fhi2upf.x to covert
the .fhi file to .upf file.



Best wishes,

Liu Gui-Bin

Dept. Physics, HKU



    ? 2011/7/9 6:08, bamidele ibrahim ??:

  

  


  Dear all,

  ? I needed to run epsilo.x to get optical properties, but
  the pseudopotentials available on the QE page for Zinc has
  no norm conserving pseudopotential. So, i will appreciate
  it if an assistance can come from anybody from the forum.
  Also, if there is a way to make epsilo.x recognised the
  USPP. Kindly put me through.

  

  Thanks

  ?

  Adetunji Bamidele Ibrahim

  Department of physics,University of Agriculture,

  Abeokuta, Ogun State,Nigeria.
  

  
  
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[Pw_forum] I need norm conserving pseudopotetial for Zinc that can work with pwscf

2011-07-08 Thread bamidele ibrahim

Dear all,
? I needed to run epsilo.x to get optical properties, but the pseudopotentials 
available on the QE page for Zinc has no norm conserving pseudopotential. So, i 
will appreciate it if an assistance can come from anybody from the forum. Also, 
if there is a way to make epsilo.x recognised the USPP. Kindly put me through.

Thanks
?
Adetunji Bamidele Ibrahim

Department of physics,University of Agriculture,

Abeokuta, Ogun State,Nigeria.
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[Pw_forum] can pwscf compute elastic constant?

2011-07-06 Thread bamidele ibrahim
Dear Sanjeev,
? I understand the theoretical aspect of this concept, but i don't know how to 
do the calculation with pwscf. This is the reason why i repeated the question 
on the forum if anybody can give me the description of how the input file will 
look like. And if you cab help with the description, i will appreciate it.

Thanks,
Ibrahim

Adetunji Bamidele Ibrahim

Department of physics,University of Agriculture,

Abeokuta, Ogun State,Nigeria.

--- On Tue, 7/5/11, Sanjeev Gupta  wrote:

From: Sanjeev Gupta <physics.skgu...@gmail.com>
Subject: Re: [Pw_forum] can pwscf compute elastic constant?
To: "PWSCF Forum" 
Date: Tuesday, July 5, 2011, 12:07 AM

i do not understand, why u asked same question, while your answer was given in 
old post.Please see and dont make?separate.
Best?Sanjeev



On Tue, Jul 5, 2011 at 11:17 AM, bamidele ibrahim  wrote:

Dear All,
? I want to know if the pwscf code can compute the elastic constant. If this is 
possible, can anybody with an idea give a description of how the input file for 
the calculation would look like. I will be delighted to read some lines from 
the forum.


Ciao 

Adetunji Bamidele Ibrahim

Department of physics,University of Agriculture,

Abeokuta, Ogun State,Nigeria.
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-- 
Dr. Sanjeev Kumar Gupta
Post Doctoral Fellow,
Department of Physics,

Bhavnagar University, Bhavnagar-364 022
Gujarat, India




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[Pw_forum] can pwscf compute elastic constant?

2011-07-04 Thread bamidele ibrahim
Dear All,
? I want to know if the pwscf code can compute the elastic constant. If this is 
possible, can anybody with an idea give a description of how the input file for 
the calculation would look like. I will be delighted to read some lines from 
the forum.

Ciao 

Adetunji Bamidele Ibrahim

Department of physics,University of Agriculture,

Abeokuta, Ogun State,Nigeria.
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[Pw_forum] how to calculate elastic constants

2011-06-30 Thread bamidele ibrahim
Dear GAO,
? Thanks for this input. Please, if you have an electronic copy of any of the 
papers, kindly forward it to me. I will be looking ahead for this.

Thanks

Adetunji Bamidele Ibrahim

Department of physics,University of Agriculture,

Abeokuta, Ogun State,Nigeria.

--- On Thu, 6/30/11, GAO Zhe  wrote:

From: GAO Zhe <flux_ra...@163.com>
Subject: Re: [Pw_forum] how to calculate elastic constants
To: "PWSCF Forum" 
Date: Thursday, June 30, 2011, 12:53 AM

For the 1st question( elastic constants' calculations), you can read these 
papers (or chanpters of a book):
1-> M.J. Mehl, B.M. Klein, D.A. Papaconstantopoulos, in: J.H. west-Book, R.L. 
Fleisher(Eds.), Principles Intermetallic Compounds, vol. 1, Wiley, New York, 
1995 (Chapter 9)
2-> M.J. Mehl, J.E., Osburn, D.A. Papaconstantopoulos, B.M. Klein, Phys. Rev. B 
41(1990) 10311
--
GAO Zhe
CMC Lab, MSE, SNU, Seoul, S.Korea


At 2011-06-30 10:40:56?"bamidele?ibrahim"? wrote:
 
Dear all,
I have two questions which? i needed an assistance on how to go about it. I 
will be delighted if anybody in the forum can come to my aid.
The first question goes as:
? How can i? calculate the elastic constants(C11,C12 and C44) at (0 K) and (0 
GPa) of a semiconductor compound using pwscf ?.
? The second question:
? In studying the phase transition, we need to analysed the enthalpy variation 
with pressure. Where the enthalpy(H) = E + PV. So, how can this be implemented 
using pwscf?
These are my questions.
?? 

Adetunji Bamidele Ibrahim

Department of physics,University of Agriculture,

Abeokuta, Ogun State,Nigeria.


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[Pw_forum] how to calculate elastic constants

2011-06-29 Thread bamidele ibrahim

Dear all,
I have two questions which? i needed an assistance on how to go about it. I 
will be delighted if anybody in the forum can come to my aid.
The first question goes as:
? How can i? calculate the elastic constants(C11,C12 and C44) at (0 K) and (0 
GPa) of a semiconductor compound using pwscf ?.
? The second question:
? In studying the phase transition, we need to analysed the enthalpy variation 
with pressure. Where the enthalpy(H) = E + PV. So, how can this be implemented 
using pwscf?
These are my questions.
?? 

Adetunji Bamidele Ibrahim

Department of physics,University of Agriculture,

Abeokuta, Ogun State,Nigeria.
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[Pw_forum] absorption spectrum calculation

2011-06-10 Thread bamidele ibrahim

Dear all,
 I am interested in absorption spectrum calculation of 
semiconductor materials am working on. I read from the example that came with 
the espresso package that after scf calculation, one need to run? 
upf2plotcore.sh to be able to extract the core electron from the 
pseudopotential of the system of interest. But i keep getting empty value in 
.wfc file. Please can anyone give me an idea. 



Adetunji Bamidele Ibrahim

M.Sc/Ph.D Student,

Department of physics,

University of Agriculture,

Abeokuta, Ogun State,

Nigeria.
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[Pw_forum] how to get fermi energy for semiconductor in pwscf calculation

2011-06-10 Thread bamidele ibrahim
Thanks for this wonderful information and suggestions.

Adetunji Bamidele Ibrahim

M.Sc/Ph.D Student,

Department of physics,

University of Agriculture,

Abeokuta, Ogun State,

Nigeria.

--- On Fri, 6/10/11, GAO Zhe  wrote:

From: GAO Zhe <flux_ra...@163.com>
Subject: Re: [Pw_forum] how to get fermi energy for semiconductor in pwscf 
calculation
To: "PWSCF Forum" 
Date: Friday, June 10, 2011, 12:20 AM

You should choose smearing method depends on your knowledge and system you are 
calculating. In PWscf, there are four kinds of smearing: gaussian, mp, mv and 
fermi-dirac. For the parameter degauss, you'd better test it like 
cut-off/k-points convergence test.
More information, please read this slide show: 
http://quantum-espresso.org/wiki/images/9/97/Ucsb_sn_lec1.pdf

At 2011-06-10 15:07:34?"bamidele?ibrahim"? wrote:
 Thanks for that information. But, using occupations='smearing' , what should 
the smearing='???' be. also, how do i get the degauss='??' value.

--- On Thu, 6/9/11, GAO Zhe  wrote:

From: GAO Zhe <flux_ra...@163.com>
Subject: Re: [Pw_forum] how to get fermi energy for semiconductor in pwscf 
calculation
To: "PWSCF Forum" 
Date: Thursday, June 9, 2011, 11:16 PM

You can try to use smearing in scf calculation by adding occupations='smearing' 
in  namelist.

At 2011-06-10 13:31:45?"bamidele?ibrahim"? wrote:
 dear all,

?I am working on some semiconductor materials, i want to plot there band 
structure. After running the scf,nscf and band calculations. To plot the band 
structure, i was asked by the plotband.x to input the value of fermi energy 
which i don't have. Please, kindly assist me with this problem if anybody have 
an idea of what to do. 



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[Pw_forum] how to get fermi energy for semiconductor in pwscf calculation

2011-06-10 Thread bamidele ibrahim
Thanks for that information. But, using occupations='smearing' , what should 
the smearing='???' be. also, how do i get the degauss='??' value.

--- On Thu, 6/9/11, GAO Zhe  wrote:

From: GAO Zhe <flux_ra...@163.com>
Subject: Re: [Pw_forum] how to get fermi energy for semiconductor in pwscf 
calculation
To: "PWSCF Forum" 
Date: Thursday, June 9, 2011, 11:16 PM

You can try to use smearing in scf calculation by adding occupations='smearing' 
in  namelist.

At 2011-06-10 13:31:45?"bamidele?ibrahim"? wrote:
 dear all,

?I am working on some semiconductor materials, i want to plot there band 
structure. After running the scf,nscf and band calculations. To plot the band 
structure, i was asked by the plotband.x to input the value of fermi energy 
which i don't have. Please, kindly assist me with this problem if anybody have 
an idea of what to do. 



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