Re: [Wien] NMR calculation results by WIEN2k

2013-08-26 Thread Peter Blaha



Am 26.08.2013 03:13, schrieb Bing Zhou:

Dear all,
This is my first experience in running NMR calculations using WIEN2k, and there 
are some messages produced, which make me me worry if I did it right, so could 
you please
take a look of the following messages produced during running x_nmr_lapw -p 
and let me how to fix? thank you advance!
Bing
klist    ready
nmr:  klists  done
cp: cannot stat `.machines': No such file or directory
cd ./nmr_q0  ...  x lapw1 -nmr   -p -scratch /scratch/


Here is a problem:   you requested-p  (parallel calculation), but you do not
have.machines. While the lapw1/2 steps can deal with this, the following 
current/integ
steps will fail and you will get zero CS.   (I'll fix this in future releases).

Rerun with  proper .machines  or without -p



  running lapw1 in single mode
  _nb in dscgst.F 640 128


These are only some informative messages, not important.

--
-
Peter Blaha
Inst. Materials Chemistry, TU Vienna
Getreidemarkt 9, A-1060 Vienna, Austria
Tel: +43-1-5880115671
Fax: +43-1-5880115698
email: pbl...@theochem.tuwien.ac.at
-
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Re: [Wien] ssh with password authentication

2013-08-26 Thread Peter Blaha
Yes. Just read the UG. All you need is a common (NFS) filesystem and 
passwordless login via ssh-keygen


On 08/25/2013 01:03 PM, Yundi Quan wrote:

Hi,
Can WIEN2k use multiple nodes which do not share memory with each other
and requires password to communicate?


Yundi


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Phone: +43-1-58801-165300 FAX: +43-1-58801-165982
Email: bl...@theochem.tuwien.ac.atWWW: 
http://info.tuwien.ac.at/theochem/

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[Wien] Fwd: need clarification on changes in spin magnetic moment in cell after SCF run

2013-08-26 Thread venkatesh chandragiri
Dear sir ,

I have done the non spin polarized calculations and compared the total
energy value with the spin polarized case.

Non spin polarized case:

Fe2VA94Si06_NM_SCF.scf::ENE  : ** TOTAL ENERGY IN Ry =
-119704.65438816



Spin polarized case:

Fe2VA94Si06_SP_SCF.scf::ENE  : ** TOTAL ENERGY IN Ry =
-119704.65580990


So, what one can infer from the almost similar values of energy in
both spin polarized
and Non spin polarized case?

Looking forward to your comments

regards,

venkatesh.


-- Forwarded message --
From: venkatesh chandragiri venkyphysicsi...@gmail.com
Date: Thu, Aug 15, 2013 at 10:57 PM
Subject: need clarification on changes in spin magnetic moment in cell
after SCF run
To: wien@zeus.theochem.tuwien.ac.at


Dear Sir,

I did the calculations on 225 space group compounds as regular methodology
in Wien2k such as running volume optimization and Force minimization before
going to the final SCF. I have few doubts on the results that i have obtain
as written below

1. I found that total magnetic moment of my structure is  0 uB (Bohr
magnetron) which is predicted for my case. But, whenever working with run
scf by taking Force optimized case.struct file, i got increased total
magnetic moment  to -0.00168 uB. So, why this increase in magnetic moment
happens, Is there ant correction to be done..?

2. As i already done scf calculations while doing Force minimization, can i
use this case.scf file for my further property estimations like..DOS,
magnetic moment, band structure and optical properties...etc.? (Because
this struct file have total magnetic moment same as predicted).

3. I have got negative total magnetic moments for some structures, Is that
means these structures have anti ferromagnetic ground state..?

looking forward to your responses.

thanks in advance

regards,
Ch. Venkatesh,
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Re: [Wien] Re : need clarification on changes in spin magnetic moment in cell after SCF run

2013-08-26 Thread Peter Blaha
a) The first thing:   Which magnetic state do you get for the normal 
Fe2VAl compound (in the normal small unit cell) ???


b) Even when Fe2VAl turns out to be nonmagnetic ???, by doping with Si, 
you introduce an extra electron into the system and thus you could get 
some magnetism, maybe even some strange one, although your numbers did 
not look very convincing and since you sent several series of MMI 
values, it is not really clear what one should say.


c) Make sure you converge extremely well (-cc as low as possible), 
because sometimes moments disappear very slowly, or show Friedel 
oscillations,

grep :MMI00x case.scf   must be really stable.

 The number of plan waves used are 5952

This seems a bit small 

 The number of irreducibleBZ  k-points are 10 (2x2x5 mesh).

Also check this k-mesh


On 08/24/2013 09:57 PM, venkatesh chandragiri wrote:

Dear Gerhard sir,

I have given replies to some of your comments. Please, give me the
suggestions on the magnetic state of the system in the present discussion.

 I would say,
you can not draw any conclusion from those numbers
without knowledge what atoms that are and without knowledge about the number of k 
points, and number of plane waves, and other things.


The super cell structure (2x2x1) is made with 225 space group. The composition 
of the system is Fe2VAl0.935Si0.065 (Si doped in Al-site of Fe2VAl).




The number of irreducibleBZ  k-points are 10 (2x2x5 mesh). with total 64 atoms 
(26 formula units)



The number of plan waves used are5952



=

Fe2VA94Si06_SP_SCF
P   LATTICE,NONEQUIV.ATOMS: 64
MODE OFCALC=RELA  unit=bohr
  21.523876 21.523876 10.761938 90.00 90.00 90.00
ATOM  -1: X=0.99989106 Y=0.50010547 Z=0.00026035
   MULT= 1ISPLIT= 8
Fe1NPT=  781  R0=0.5000RMT=2.2200   Z: 26.0

ATOM  -2: X=0.5329 Y=0.50021710 Z=0.4650
   MULT= 1ISPLIT= 8
Fe2NPT=  781  R0=0.5000RMT=2.2200   Z: 26.0

ATOM  -3: X=0.99976873 Y=0.7243 Z=0.6501
   MULT= 1ISPLIT= 8
Fe3NPT=  781  R0=0.5000RMT=2.2200   Z: 26.0

ATOM  -4: X=0.50175057 Y=0.99825105 Z=0.99691359
   MULT= 1ISPLIT= 8
Fe4NPT=  781  R0=0.5000RMT=2.2200   Z: 26.0

ATOM  -5: X=0.25010885 Y=0.50010551 Z=0.00026034
   MULT= 1ISPLIT= 8
Fe5NPT=  781  R0=0.5000RMT=2.2200   Z: 26.0

ATOM  -6: X=0.74999681 Y=0.50021710 Z=0.4656
   MULT= 1ISPLIT= 8
Fe6NPT=  781  R0=0.5000RMT=2.2200   Z: 26.0

ATOM  -7: X=0.25023116 Y=0.7241 Z=0.6501
   MULT= 1ISPLIT= 8
Fe7NPT=  781  R0=0.5000RMT=2.2200   Z: 26.0

ATOM  -8: X=0.74824954 Y=0.99825105 Z=0.99691361
   MULT= 1ISPLIT= 8
Fe8NPT=  781  R0=0.5000RMT=2.2200   Z: 26.0

ATOM  -9: X=0.99989853 Y=0.24987685 Z=0.00023635
   MULT= 1ISPLIT= 8
Fe9NPT=  781  R0=0.5000RMT=2.2200   Z: 26.0

ATOM -10: X=0.5911 Y=0.24978894 Z=0.4386
   MULT= 1ISPLIT= 8
Fe10NPT=  781  R0=0.5000RMT=2.2200   Z: 26.0

ATOM -11: X=0.99977614 Y=0.74999320 Z=0.4266
   MULT= 1ISPLIT= 8
Fe11NPT=  781  R0=0.5000RMT=2.2200   Z: 26.0

ATOM -12: X=0.50175577 Y=0.75173859 Z=0.99691120
   MULT= 1ISPLIT= 8
Fe12NPT=  781  R0=0.5000RMT=2.2200   Z: 26.0

ATOM -13: X=0.25010135 Y=0.24987685 Z=0.00023635
   MULT= 1ISPLIT= 8
Fe13NPT=  781  R0=0.5000RMT=2.2200   Z: 26.0

ATOM -14: X=0.74999104 Y=0.24978892 Z=0.4386
   MULT= 1ISPLIT= 8
Fe14NPT=  781  R0=0.5000RMT=2.2200   Z: 26.0

ATOM -15: X=0.25022373 Y=0.74999320 Z=0.4265
   MULT= 1ISPLIT= 8
Fe15NPT=  781  R0=0.5000RMT=2.2200   Z: 26.0

ATOM -16: X=0.74824433 Y=0.75173859 Z=0.99691121
   MULT= 1ISPLIT= 8
Fe16NPT=  781  R0=0.5000RMT=2.2200   Z: 26.0

ATOM -17: X=0.99989106 Y=0.50010546 Z=0.49973965
   MULT= 1ISPLIT= 8
Fe17NPT=  781  R0=0.5000RMT=2.2200   Z: 26.0

ATOM -18: X=0.5329 Y=0.50021710 Z=0.50005350
   MULT= 1ISPLIT= 8
Fe18NPT=  781  R0=0.5000RMT=2.2200   Z: 26.0
ATOM -19: X=0.99976873 Y=0.7243 Z=0.50003499
   MULT= 1ISPLIT= 8
Fe19NPT=  781  R0=0.5000RMT=2.2200   Z: 26.0

ATOM -20: X=0.50175057 Y=0.99825105 Z=0.50308641
   MULT= 1ISPLIT= 8
Fe20NPT=  781  R0=0.5000RMT=2.2200   Z: 26.0

ATOM -21: X=0.25010885 Y=0.50010551 Z=0.49973966
   MULT= 1ISPLIT= 8
Fe21NPT=  781  R0=0.5000RMT=2.2200   Z: 26.0

ATOM -22: X=0.74999681 Y=0.50021710 Z=0.50005344
   MULT= 1ISPLIT= 8
Fe22NPT=  781  R0=0.5000RMT=2.2200   Z: 26.0
ATOM -23: X=0.25023116 Y=0.7241 Z=0.50003499
   MULT= 1ISPLIT= 8
Fe23NPT=  781  R0=0.5000RMT=2.2200   Z: 26.0

ATOM -24: X=0.74824954 Y=0.99825105 Z=0.50308639
   MULT= 1ISPLIT= 8
Fe24NPT=  781  R0=0.5000RMT=2.2200   Z: 26.0

ATOM -25: X=0.99989853 Y=0.24987685 Z=0.49976365
   MULT= 1ISPLIT= 8
Fe25NPT=  781  R0=0.5000RMT=

Re: [Wien] Fwd: need clarification on changes in spin magnetic moment in cell after SCF run

2013-08-26 Thread Peter Blaha

Again, have you checked the convergence of these numbers ???

run_lapw  and runsp_lapw  alone is NOT enough ! You have to specify 
tight -ec -cc parameters.   And k-mesh, RKmax ... ?


Structure optimization ?  -fc 1.0 ; check forces and relaxe the atoms 
around Si.


If everything is converged, maybe you found a magnetic impurity (Si) ??
Plot the spin-density and look where it is ...


On 08/26/2013 09:24 AM, venkatesh chandragiri wrote:

Dear sir ,

I have done the non spin polarized calculations and compared the total
energy value with the spin polarized case.

Non spin polarized case:

Fe2VA94Si06_NM_SCF.scf::ENE  : ** TOTAL ENERGY IN Ry =  
-119704.65438816

Spin polarized case:

Fe2VA94Si06_SP_SCF.scf::ENE  : ** TOTAL ENERGY IN Ry =  
-119704.65580990


So, what one can infer from the almost similar values of energy in both spin 
polarized
and Non spin polarized case?


Looking forward to your comments

regards,

venkatesh.


-- Forwarded message --
From: *venkatesh chandragiri* venkyphysicsi...@gmail.com
mailto:venkyphysicsi...@gmail.com
Date: Thu, Aug 15, 2013 at 10:57 PM
Subject: need clarification on changes in spin magnetic moment in cell
after SCF run
To: wien@zeus.theochem.tuwien.ac.at mailto:wien@zeus.theochem.tuwien.ac.at


Dear Sir,

I did the calculations on 225 space group compounds as regular
methodology in Wien2k such as running volume optimization and Force
minimization before going to the final SCF. I have few doubts on the
results that i have obtain as written below

1. I found that total magnetic moment of my structure is  0 uB (Bohr
magnetron) which is predicted for my case. But, whenever working with
run scf by taking Force optimized case.struct file, i got increased
total magnetic moment  to -0.00168 uB. So, why this increase in magnetic
moment happens, Is there ant correction to be done..?

2. As i already done scf calculations while doing Force minimization,
can i use this case.scf file for my further property estimations
like..DOS, magnetic moment, band structure and optical
properties...etc.? (Because this struct file have total magnetic
moment same as predicted).

3. I have got negative total magnetic moments for some structures, Is
that means these structures have anti ferromagnetic ground state..?

looking forward to your responses.

thanks in advance

regards,
Ch. Venkatesh,


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--

  P.Blaha
--
Peter BLAHA, Inst.f. Materials Chemistry, TU Vienna, A-1060 Vienna
Phone: +43-1-58801-165300 FAX: +43-1-58801-165982
Email: bl...@theochem.tuwien.ac.atWWW: 
http://info.tuwien.ac.at/theochem/

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[Wien] Using TB-mbj functional in WIEN-2k

2013-08-26 Thread david yang
Dear Prof. Blaha and WIEN2k user,

I am an extensive user of WIEN-2k and currently I am using version 12.1 .

I am trying to calculate band gap of few oxides in WIEN2k using TB-mbj
functinal , but i am not aware of the steps involved. (I tried checking in
the mailing list but did not get much insight)

In WIEN2k 12.1 there is no such executable* *as init_mbj_lapw . So I am not
sure how to start my calculation. Any suggestion and small insight in this
regards with be highly helpful.

Thank you all in advance




Regards
David yang
Ph D student
NUS Singapore
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Re: [Wien] Using TB-mbj functional in WIEN-2k

2013-08-26 Thread Michael Sluydts

Hello,

To expand the previous reply a bit, the manual lists the steps that 
init_mBJ_lapw follows which you must execute manually unless you are 
using version 13.


Regards,

Michael Sluydts


Op 26/08/2013 12:00, t...@theochem.tuwien.ac.at schreef:

Hi,

In principle the steps are explained in the user's guide which is
in your WIEN2k directory.

F. Tran

On Mon, 26 Aug 2013, david yang wrote:


Dear Prof. Blaha and WIEN2k user,

I am an extensive user of WIEN-2k and currently I am using version 
12.1 .


I am trying to calculate band gap of few oxides in WIEN2k using TB-mbj
functinal , but i am not aware of the steps involved. (I tried 
checking in

the mailing list but did not get much insight)

In WIEN2k 12.1 there is no such executable as init_mbj_lapw . So I am 
not
sure how to start my calculation. Any suggestion and small insight in 
this

regards with be highly helpful.

Thank you all in advance




Regards
David yang
Ph D student
NUS Singapore



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Re: [Wien] Wien2Wannier with spin-orbit coupling

2013-08-26 Thread Elias Assmann

Dear Kyohn,

I finally got a chance to look into your problem, and I can reproduce 
the behavior you describe. Without SO everything worked fine.  With SO, 
the projection clearly went awry: The spreads were too large (~16 Ų vs 
~4 Ų in the non-SO case), the centers were off, and the Wannier 
bandstructure was bad also.  Is that what you saw?


I then tried the example on a different machine, because I had a 
different Wien2k version there -- I thought maybe something about SO had 
changed and broken the w2w procedure.  There, I really did get good 
results, but it turns out that the key difference was the compiler and 
LAPACK library used for wannier90.


The problem happened when I used ‘ifort’ together with the ATLAS 
library.  I tried various combinations of ifort/gfortran and 
MKL/ATLAS/netlib, but only ifort+ATLAS seems to have this problem.


Can you please try if a similar strategy works in your case?


Elias
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Re: [Wien] NMR calculation results by WIEN2k

2013-08-26 Thread Bing Zhou
Dear Peter,
Many thanks for your clarification on this issue, I will run x_nmr_lapw again 
without -p option before I fix .machines.
Best wishes,
Bing

From: Peter Blaha pbl...@theochem.tuwien.ac.at
To: A Mailing list for WIEN2k users wien@zeus.theochem.tuwien.ac.at 
Sent: Monday, August 26, 2013 2:11:15 PM
Subject: Re: [Wien] NMR calculation results by WIEN2k




Am 26.08.2013 03:13, schrieb Bing Zhou:
 Dear all,
 This is my first experience in running NMR calculations using WIEN2k, and 
 there are some messages produced, which make me me worry if I did it right, 
 so could you please
 take a look of the following messages produced during running x_nmr_lapw -p 
 and let me how to fix? thank you advance!
 Bing
 klist    ready
 nmr:  klists     done
 cp: cannot stat `.machines': No such file or directory
 cd ./nmr_q0  ...  x lapw1 -nmr  -p    -scratch /scratch/

Here is a problem:  you requested    -p  (parallel calculation), but you do not
have    .machines. While the lapw1/2 steps can deal with this, the following 
current/integ
steps will fail and you will get zero CS.  (I'll fix this in future releases).

Rerun with  proper .machines  or without -p


  running lapw1 in single mode
  _nb in dscgst.F        640        128

These are only some informative messages, not important.

-- 
-
Peter Blaha
Inst. Materials Chemistry, TU Vienna
Getreidemarkt 9, A-1060 Vienna, Austria
Tel: +43-1-5880115671
Fax: +43-1-5880115698
email: pbl...@theochem.tuwien.ac.at
-
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[Wien] AFM

2013-08-26 Thread Antonio Vanderlei dos Santos - Fisica
 

dear users
I'm trying to run a calculation antiferromagnetic and the
following error appears.

Some could help me.

Commandline: X AFMINPUT
-UP 
Program input is: 1.0 0.0 0.0 0.5 0.0 1.0 0.0 0.5 0.0 0.0 1.0 0.5
 

At line 227 of file afminput.f (unit = 5, file = 'stdin')
Fortran
runtime error: Bad integer for item 1 in list input

case.struct_supergroup NOT present!!!
 It is strongly recommended that
you copy the (nonmagnetic) supergroup 
 struct file to
case.struct_supergroup (unless they are KLASSENGLEICH)
 Otherwise:
 You
must specify a symmetry operation (rotation + translation vector) 

which transforms the spin-up into the spin-dn atom (e.g. for AFM bcc
Cr:)!
 1 0 0 0.5
 0 1 0 0.5
 0 0 1 0.5
0.0u 0.0s 0:00.00 0.0% 0+0k 0+8io
0pf+0w
error: command /home/wien2k/afminput upafminput.def failed

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Re: [Wien] AFM

2013-08-26 Thread Stefaan Cottenier



I'm trying to run a calculation antiferromagnetic and the following error 
appears.

  case.struct_supergroup NOT present!!!


Did you read the FAQ?

http://www.wien2k.at/reg_user/faq/afm.html

You have tried steps 6-7. This is possible only in specific cases, and 
can save indeed 50% of the calculation time. But unless you have a very 
time-consuming case, it is recommended to use steps 1-5 of the FAQ 
instead. Your error will vanish if you do so.


Stefaan

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Re: [Wien] AFM

2013-08-26 Thread Gavin Abo
I think case.struct_supergroup NOT present!!! can be ignored and is 
not a problem in this case, since it looks like you specified the 
symmetry operation instead as:


Program input is: 1.0 0.0 0.0 0.5 0.0 1.0 0.0 0.5 0.0 0.0 1.0 0.5 

I think the problem is how you specified the input, which results in the 
error Fortran runtime error: Bad integer for item 1 in list input.  
This is because you have used real numbers like 1.0 in places where 
you need to use integers like 1.  So the input likely needs to be:


Program input is: 1 0 0 0.5 0 1 0 0.5 0 0 1 0.5 

On 8/26/2013 1:22 PM, Antonio Vanderlei dos Santos - Fisica wrote:


 dear users

I'm trying to run a calculation antiferromagnetic and the following error 
appears.

 Some could help me.

 Commandline: *x afminput -up *
Program input is: *1.0 0.0 0.0 0.5 0.0 1.0 0.0 0.5 0.0 0.0 1.0 0.5 *

At line 227 of file afminput.f (unit = 5, file = 'stdin')
Fortran runtime error: Bad integer for item 1 in list input
  case.struct_supergroup NOT present!!!
  It is strongly recommended that you copy the (nonmagnetic) supergroup
  struct file to case.struct_supergroup (unless they are KLASSENGLEICH)
  Otherwise:
  You must specify a symmetry operation (rotation + translation vector)
  which transforms the spin-up into the spin-dn atom (e.g. for AFM bcc Cr:)!
   1 0 0  0.5
   0 1 0  0.5
   0 0 1  0.5
0.0u 0.0s 0:00.00 0.0% 0+0k 0+8io 0pf+0w
error: command   /home/wien2k/afminput upafminput.def   failed



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Re: [Wien] ssh with password authentication

2013-08-26 Thread Elias Assmann

On 08/25/2013 01:03 PM, Yundi Quan wrote:

Can WIEN2k use multiple nodes which do not share memory with each other
and requires password to communicate?


If you are talking about a situation where you are unable to use 
passwordless login like Peter suggested, there is a way to do it.


It is not trivial (i.e. `echo PASSWORD | ssh ...´ does not work) because 
`ssh´ tries to prevent this kind of thing because it is insecure; you 
have to trick `ssh´ into thinking its input comes from a terminal.  One 
such solution is provided by `sshpass´:

http://sourceforge.net/projects/sshpass/.

Use this script with care, if you have to.  If you can, use the proper 
ssh-keygen / ssh-copy-id method.



Elias

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Re: [Wien] AFM

2013-08-26 Thread swati chaudhury
hi,
  case.struct_supergroup is not a problem. If you specify symmetry operation, 
automatically programme will run.
best wishes
Swati Chaudhury



 From: Gavin Abo gs...@crimson.ua.edu
To: A Mailing list for WIEN2k users wien@zeus.theochem.tuwien.ac.at 
Sent: Tuesday, 27 August 2013 1:40 AM
Subject: Re: [Wien] AFM
 


I think case.struct_supergroup NOT present!!! can be ignored and is not a 
problem in this case, since it looks like you specified the symmetry operation 
instead as:

Program input is: 1.0 0.0 0.0 0.5 0.0 1.0 0.0 0.5 0.0 0.0 1.0 0.5
   

I think the problem is how you specified the input, which results
  in the error Fortran runtime error: Bad integer for item 1 in
  list input.  This is because you have used real numbers like
  1.0 in places where you need to use integers like 1.  So the
  input likely needs to be:

Program input is: 1 0 0 0.5 0 1 0 0.5 0 0 1 0.5  

On 8/26/2013 1:22 PM, Antonio Vanderlei dos Santos - Fisica wrote:

 dear users

I'm trying to run a calculation antiferromagnetic and the following error 
appears.
 Some could help me.
 Commandline: x afminput -up 
Program input is: 1.0 0.0 0.0 0.5 0.0 1.0 0.0 0.5 0.0 0.0 1.0 0.5  


At line 227 of file afminput.f (unit = 5, file = 'stdin')
Fortran runtime error: Bad integer for item 1 in list input 
case.struct_supergroup NOT present!!! It is strongly recommended that you copy 
the (nonmagnetic) supergroup  struct file to case.struct_supergroup (unless 
they are KLASSENGLEICH) Otherwise: You must specify a symmetry operation 
(rotation + translation vector)  which transforms the spin-up into the spin-dn 
atom (e.g. for AFM bcc Cr:)! 1 0 0  0.5 0 1 0  0.5 0 0 1  0.5
0.0u 0.0s 0:00.00 0.0% 0+0k 0+8io 0pf+0w
error: command   /home/wien2k/afminput upafminput.def   failed  
 

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