[aroma.affymetrix] exon array with technical replicates

2009-01-19 Thread sabrina
Hi, all: I am working on Affy Mouse Exon Array . Because of the experiment design and quality of the hybridization, we have two arrays hybridized from one mouse (same biological sample). I assume that I should treat these two arrays as tehcnical duplicates. If that is the case, I could do

[aroma.affymetrix] Re: exon array with technical replicates

2009-01-19 Thread Mark Robinson
Hi Sabrina. Tricky question. Do you have biological replicates of some samples and technical replicates of others? Or, just technical replicates of everything? I suspect it would be difficult to justify adding a bunch of extra (adhoc) steps into the FIRMA pipeline. I don't have a full