Hi Jun.
Comments below.
On 28/02/2009, at 3:29 AM, Jun wrote:
> Hi,
>
> I try to get help on finding annotation for the cluster id shown in
> the cdf files.
> For the human exon array, I saw the latest transcript cluster
> annotation (.csv) dated as 11/24/08 at the Affymetrix website. The CDF
>
Hi Sebastien.
Interesting observation, I hadn't noticed that.
Since the major difference is in the fitting stage, my guess would be
that there are just more larger units (although less total units) in
the RaGene CDF. This is certainly true for say, the number of
probesets with more than 1
Hi folks.
Sorry for the delay on replying to this one, I meant to comment on
this earlier.
There are a lot of questions on the BioC newsgroup lately about custom
CDFs and picking probes and so on. To have complete control, you
would probably want to be familiar with the exact information
Hi Mathieu.
What is your plan for the analysis? What does 'n=4, N=8' mean?
Regardless, it seems like you might start with the "coreR1" CDF from:
http://groups.google.com/group/aroma-affymetrix/web/raex-1-0-st-v1
... and you could follow the use-case from (replacing the human exon
with rat e
