Hi,
I have done (and seems OK, no error message) the low level analysis of
the GenomeWideSNP_6.0 for preparing the analysis of my Affymetrix
results in 50 samples.
However, I cannot get through the steps of defining the CEL files set.
I have put all the CEL files in rawData/CLP/GenomeWideSNP_6.0
Hi Myriam,
On Thu, Jun 4, 2009 at 4:38 AM, Myriam myriam.peyr...@ki.se wrote:
Hi,
I have done (and seems OK, no error message) the low level analysis of
the GenomeWideSNP_6.0 for preparing the analysis of my Affymetrix
results in 50 samples.
However, I cannot get through the steps of
I have the following question. In the sup3.R file the probe level
model fitting is realised using the instructions:
plm - RmaPlm(csNU)
fit(plm, verbose=verbose)
where csNU is an object obtained after background correction, quantile
normalisation and conversion of the cdf to a unique version.
I
Ok, thank you so much, Pierre. I shall try and if not working, get back
to you again.
The output I gave you was the one I got but, finally (my second day
using R and Aroma Affymetrix, as I sai, a brand new beginner!!!), at the
end of the day, I realized that I had forgotten to open the aroma
library(aroma.affymetrix)
for loading the package.
/H
On Thu, Jun 4, 2009 at 8:45 AM, Myriam Peyrard myriam.peyr...@ki.se wrote:
Ok, thank you so much, Pierre. I shall try and if not working, get back
to you again.
The output I gave you was the one I got but, finally (my second day
using
Hi Ettore.
Comments below.
I have the following question. In the sup3.R file the probe level
model fitting is realised using the instructions:
plm - RmaPlm(csNU)
fit(plm, verbose=verbose)
where csNU is an object obtained after background correction, quantile
normalisation and
